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Conserved domains on  [gi|2124313997|gb|KAH6602873|]
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hypothetical protein BASA61_000674 [Batrachochytrium salamandrivorans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02320 super family cl31862
seryl-tRNA synthetase
 18-72 4.74e-05

seryl-tRNA synthetase


The actual alignment was detected with superfamily member PLN02320:

Pssm-ID: 177954 [Multi-domain]  Cd Length: 502  Bit Score: 41.06  E-value: 4.74e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2124313997  18 EGKVIKHNVQVSEEALLQQHRSLFEAARHLPNDVHKSVPVGDESCAELLATYGSP 72
Cdd:PLN02320  138 EGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGEDSSAVRKEVGSP 192
 
Name Accession Description Interval E-value
PLN02320 PLN02320
seryl-tRNA synthetase
 18-72 4.74e-05

seryl-tRNA synthetase


Pssm-ID: 177954 [Multi-domain]  Cd Length: 502  Bit Score: 41.06  E-value: 4.74e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2124313997  18 EGKVIKHNVQVSEEALLQQHRSLFEAARHLPNDVHKSVPVGDESCAELLATYGSP 72
Cdd:PLN02320  138 EGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGEDSSAVRKEVGSP 192
 
Name Accession Description Interval E-value
PLN02320 PLN02320
seryl-tRNA synthetase
 18-72 4.74e-05

seryl-tRNA synthetase


Pssm-ID: 177954 [Multi-domain]  Cd Length: 502  Bit Score: 41.06  E-value: 4.74e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2124313997  18 EGKVIKHNVQVSEEALLQQHRSLFEAARHLPNDVHKSVPVGDESCAELLATYGSP 72
Cdd:PLN02320  138 EGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGEDSSAVRKEVGSP 192
PRK05431 PRK05431
seryl-tRNA synthetase; Provisional
 18-72 6.02e-03

seryl-tRNA synthetase; Provisional


Pssm-ID: 235461 [Multi-domain]  Cd Length: 425  Bit Score: 35.04  E-value: 6.02e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2124313997  18 EGKVIKHNVQVSEEALLQQHRSLFEAARHLPNDVHKSVPVG-DESCAELLATYGSP 72
Cdd:PRK05431   74 EVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGkDEDDNVEVRRWGEP 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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