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Conserved domains on  [gi|2111969734|gb|UCR98708|]
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putative movement protein [Strawberry polerovirus 1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Luteo_Vpg super family cl03297
Luteovirus putative VPg genome linked protein; This family consists of several putative genome ...
 48-137 3.35e-08

Luteovirus putative VPg genome linked protein; This family consists of several putative genome linked proteins. The genomic RNA of luteoviruses are linked to virally encoded genome proteins (VPg). Open reading frame 4 is thought to encode the VPg in Soybean dwarf luteovirus. Luteoviruses have isometric capsids that contain a positive stand ssRNA genome, they have no DNA stage during their replication.


The actual alignment was detected with superfamily member pfam01659:

Pssm-ID: 279928  Cd Length: 105  Bit Score: 49.53  E-value: 3.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111969734  48 EESMKLSSSLRRTSRETPLDISPSGRLYQSIQHSQMVISRPTSTTGLRVSTWNISQ-NPLIKHQEPLSLRWTRASQQLRL 126
Cdd:pfam01659   7 EAGARHSCLQLTTLKATPKEQSNSAPVYQNAQHFQMEYSRPTISIRSQASEFSLSHaRPLPIPPALSLLSSTPIAKNHPS 86

                          90
                  ....*....|.
gi 2111969734 127 LPQSIDFPSRR 137
Cdd:pfam01659  87 SATLIPSKLAR 97
 
Name Accession Description Interval E-value
Luteo_Vpg pfam01659
Luteovirus putative VPg genome linked protein; This family consists of several putative genome ...
 48-137 3.35e-08

Luteovirus putative VPg genome linked protein; This family consists of several putative genome linked proteins. The genomic RNA of luteoviruses are linked to virally encoded genome proteins (VPg). Open reading frame 4 is thought to encode the VPg in Soybean dwarf luteovirus. Luteoviruses have isometric capsids that contain a positive stand ssRNA genome, they have no DNA stage during their replication.


Pssm-ID: 279928  Cd Length: 105  Bit Score: 49.53  E-value: 3.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111969734  48 EESMKLSSSLRRTSRETPLDISPSGRLYQSIQHSQMVISRPTSTTGLRVSTWNISQ-NPLIKHQEPLSLRWTRASQQLRL 126
Cdd:pfam01659   7 EAGARHSCLQLTTLKATPKEQSNSAPVYQNAQHFQMEYSRPTISIRSQASEFSLSHaRPLPIPPALSLLSSTPIAKNHPS 86

                          90
                  ....*....|.
gi 2111969734 127 LPQSIDFPSRR 137
Cdd:pfam01659  87 SATLIPSKLAR 97
 
Name Accession Description Interval E-value
Luteo_Vpg pfam01659
Luteovirus putative VPg genome linked protein; This family consists of several putative genome ...
 48-137 3.35e-08

Luteovirus putative VPg genome linked protein; This family consists of several putative genome linked proteins. The genomic RNA of luteoviruses are linked to virally encoded genome proteins (VPg). Open reading frame 4 is thought to encode the VPg in Soybean dwarf luteovirus. Luteoviruses have isometric capsids that contain a positive stand ssRNA genome, they have no DNA stage during their replication.


Pssm-ID: 279928  Cd Length: 105  Bit Score: 49.53  E-value: 3.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111969734  48 EESMKLSSSLRRTSRETPLDISPSGRLYQSIQHSQMVISRPTSTTGLRVSTWNISQ-NPLIKHQEPLSLRWTRASQQLRL 126
Cdd:pfam01659   7 EAGARHSCLQLTTLKATPKEQSNSAPVYQNAQHFQMEYSRPTISIRSQASEFSLSHaRPLPIPPALSLLSSTPIAKNHPS 86

                          90
                  ....*....|.
gi 2111969734 127 LPQSIDFPSRR 137
Cdd:pfam01659  87 SATLIPSKLAR 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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