|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-841 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1618.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 1 MTAILEKVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQ 80
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 81 RHFDVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNL 160
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 161 TPAQRREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASgDANRWYGEFA 240
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAE-DSTDLYYRIN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 241 KVVRRLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDE 320
Cdd:COG0653 240 KLVPRLKRDGDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENIELVHHLNQALRAHALFKRDVDYIVKDGEVVIVDE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 321 HTGRILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDM 400
Cdd:COG0653 320 FTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNRPM 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 401 VRIDQKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKG 480
Cdd:COG0653 400 IRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVAQAGRPG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 481 AVTVATNMAGRGTDIMLGGNAEFTAIAEMAQRGLDpaenaeeyeaaWPEVLEKAKASVAAEHEEVTELGGLYVLGTERHE 560
Cdd:COG0653 480 AVTIATNMAGRGTDIVLGGNPEFLAAAELADRGLE-----------WEEAIAKIKAEWQAEHEEVLEAGGLHVIGTERHE 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 561 SRRIDNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNSGLAESMMTRAGFPEDMPLESKIVTRGIQSAQSQVEARNFEIRK 640
Cdd:COG0653 549 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGRNFDIRK 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 641 NVLKYDDVMSRQREVIYDQRRRVLEGEDLQEQVAHFRTDVLTDYVQLATAEG-RPEDWDLEALWTSLRGVFPITITPEEV 719
Cdd:COG0653 629 NLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGsYPEQWDLEGLEEALKELFGLDLPIEEW 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 720 VEQAGgetrLSSELILREVLSDAEHAYAEREAQLGEANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPL 799
Cdd:COG0653 709 LDEEG----LDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPL 784
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 2111155961 800 VEYQREGFQLFNAMTDAIKEESVQYLYNLEVQVQEPTDAAAP 841
Cdd:COG0653 785 VEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREEVEE 826
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-831 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1558.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 1 MTAILEKVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQ 80
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 81 RHFDVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNL 160
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 161 TPAQRREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPAsGDANRWYGEFA 240
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA-EDSSELYKRAN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 241 KVVRRLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDE 320
Cdd:PRK12904 240 KIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 321 HTGRILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDM 400
Cdd:PRK12904 320 FTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPM 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 401 VRIDQKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKG 480
Cdd:PRK12904 400 IRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 481 AVTVATNMAGRGTDIMLGGNAEFTAIAEMAQrgldpaenaeeyeaAWPEVLEKAKASVAAEHEEVTELGGLYVLGTERHE 560
Cdd:PRK12904 480 AVTIATNMAGRGTDIKLGGNPEMLAAALLEE--------------ETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 561 SRRIDNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNSGLAESMMTRAGFPEDMPLESKIVTRGIQSAQSQVEARNFEIRK 640
Cdd:PRK12904 546 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRK 625
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 641 NVLKYDDVMSRQREVIYDQRRRVLEGEDLQEQVAHFRTDVLTDYVQLATAEG-RPEDWDLEALWTSLRGVFPITITPEEV 719
Cdd:PRK12904 626 QLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGsYEEDWDLEGLEEALKTDFGLELPIEEW 705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 720 VEQaggetRLSSELILREVLSDAEHAYAEREAQLGEANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPL 799
Cdd:PRK12904 706 LEE-----GLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPL 780
|
810 820 830
....*....|....*....|....*....|..
gi 2111155961 800 VEYQREGFQLFNAMTDAIKEESVQYLYNLEVQ 831
Cdd:PRK12904 781 QEYKREGFELFEEMLDSIKEEVVRTLMKVQID 812
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
27-817 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1190.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 27 VNALEDSFLSLSDAELREETDRFRARLAD-GEKLDDLLPEAFAAVREASRRTLGQRHFDVQLMGGAALHLGNIAEMKTGE 105
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 106 GKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQRREQYAADITYGTNNEFGFDY 185
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 186 LRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANrWYGEFAKVVRRLERERDYEVDEKKRTVGVLE 265
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE-LYVQANKFAKALEKEVDYEVDEKNRAVLLTE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 266 PGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGRILPGRRYNEGMHQAIEAKEGV 345
Cdd:TIGR00963 240 QGMKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 346 AIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDMVRIDQKDLVYKSEEGKFDAVVADIV 425
Cdd:TIGR00963 320 EIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIK 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 426 ERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKGAVTVATNMAGRGTDIMLggnaefta 505
Cdd:TIGR00963 400 ERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-------- 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 506 iaemaqrgldpaenaeeyeaawpevlekakasvaaehEEVTELGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYL 585
Cdd:TIGR00963 472 -------------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFL 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 586 SMQDDLMRLFNSGLAESMMTRAGFPEDMPLESKIVTRGIQSAQSQVEARNFEIRKNVLKYDDVMSRQREVIYDQRRRVLE 665
Cdd:TIGR00963 515 SLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLE 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 666 GEDLQEQVAHFRTDVLTDYVQLATAEG-RPEDWDLEALWTSLRGVFP--ITITPEEVVEqaggetrLSSELILREVLSDA 742
Cdd:TIGR00963 595 SEDLSELILQMLESTLDRIVDAYINEEkLSEEWDLEGLIEKLKTLFLldGDLTPEDLEN-------LTSEDLKELLLEKI 667
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2111155961 743 EHAYAEREAQLGEANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGFQLFNAMTDAI 817
Cdd:TIGR00963 668 RAAYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-384 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 728.07 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 5 LEKVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFD 84
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 85 VQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQ 164
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 165 RREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANRWYGEFAKVVR 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDESSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 245 RLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGR 324
Cdd:smart00957 241 RLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFTGR 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 325 ILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQ 384
Cdd:smart00957 321 VMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-383 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 669.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 5 LEKVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFD 84
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 85 VQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQ 164
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 165 RREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASgDANRWYGEFAKVVR 244
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSE-DDSELYREADRLVK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 245 RLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGR 324
Cdd:pfam07517 240 SLEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTGR 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2111155961 325 ILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEF 383
Cdd:pfam07517 320 VMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
41-396 |
8.26e-130 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 389.97 E-value: 8.26e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 41 ELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFDVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNAL 120
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 121 TGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQRREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQR 200
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 201 GHHFAIVDEVDSILIDEARTPLIISGpasgdanrwygefakvvrrlererdyevdekkrtvgvlepgiarvedylgidnl 280
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 281 yeslntpligflnnaikakelfrrdkdyvvlngevlivdehtgrilpgrrynegmhqaieakegvaikaenqTLATITLQ 360
Cdd:cd17928 187 ------------------------------------------------------------------------TLATITFQ 194
|
330 340 350
....*....|....*....|....*....|....*.
gi 2111155961 361 NYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPT 396
Cdd:cd17928 195 NYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-841 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1618.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 1 MTAILEKVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQ 80
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 81 RHFDVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNL 160
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 161 TPAQRREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASgDANRWYGEFA 240
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAE-DSTDLYYRIN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 241 KVVRRLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDE 320
Cdd:COG0653 240 KLVPRLKRDGDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENIELVHHLNQALRAHALFKRDVDYIVKDGEVVIVDE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 321 HTGRILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDM 400
Cdd:COG0653 320 FTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNRPM 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 401 VRIDQKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKG 480
Cdd:COG0653 400 IRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVAQAGRPG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 481 AVTVATNMAGRGTDIMLGGNAEFTAIAEMAQRGLDpaenaeeyeaaWPEVLEKAKASVAAEHEEVTELGGLYVLGTERHE 560
Cdd:COG0653 480 AVTIATNMAGRGTDIVLGGNPEFLAAAELADRGLE-----------WEEAIAKIKAEWQAEHEEVLEAGGLHVIGTERHE 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 561 SRRIDNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNSGLAESMMTRAGFPEDMPLESKIVTRGIQSAQSQVEARNFEIRK 640
Cdd:COG0653 549 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGRNFDIRK 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 641 NVLKYDDVMSRQREVIYDQRRRVLEGEDLQEQVAHFRTDVLTDYVQLATAEG-RPEDWDLEALWTSLRGVFPITITPEEV 719
Cdd:COG0653 629 NLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGsYPEQWDLEGLEEALKELFGLDLPIEEW 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 720 VEQAGgetrLSSELILREVLSDAEHAYAEREAQLGEANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPL 799
Cdd:COG0653 709 LDEEG----LDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPL 784
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 2111155961 800 VEYQREGFQLFNAMTDAIKEESVQYLYNLEVQVQEPTDAAAP 841
Cdd:COG0653 785 VEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREEVEE 826
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-831 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1558.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 1 MTAILEKVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQ 80
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 81 RHFDVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNL 160
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 161 TPAQRREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPAsGDANRWYGEFA 240
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA-EDSSELYKRAN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 241 KVVRRLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDE 320
Cdd:PRK12904 240 KIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 321 HTGRILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDM 400
Cdd:PRK12904 320 FTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPM 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 401 VRIDQKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKG 480
Cdd:PRK12904 400 IRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 481 AVTVATNMAGRGTDIMLGGNAEFTAIAEMAQrgldpaenaeeyeaAWPEVLEKAKASVAAEHEEVTELGGLYVLGTERHE 560
Cdd:PRK12904 480 AVTIATNMAGRGTDIKLGGNPEMLAAALLEE--------------ETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 561 SRRIDNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNSGLAESMMTRAGFPEDMPLESKIVTRGIQSAQSQVEARNFEIRK 640
Cdd:PRK12904 546 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRK 625
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 641 NVLKYDDVMSRQREVIYDQRRRVLEGEDLQEQVAHFRTDVLTDYVQLATAEG-RPEDWDLEALWTSLRGVFPITITPEEV 719
Cdd:PRK12904 626 QLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGsYEEDWDLEGLEEALKTDFGLELPIEEW 705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 720 VEQaggetRLSSELILREVLSDAEHAYAEREAQLGEANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPL 799
Cdd:PRK12904 706 LEE-----GLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPL 780
|
810 820 830
....*....|....*....|....*....|..
gi 2111155961 800 VEYQREGFQLFNAMTDAIKEESVQYLYNLEVQ 831
Cdd:PRK12904 781 QEYKREGFELFEEMLDSIKEEVVRTLMKVQID 812
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
27-817 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1190.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 27 VNALEDSFLSLSDAELREETDRFRARLAD-GEKLDDLLPEAFAAVREASRRTLGQRHFDVQLMGGAALHLGNIAEMKTGE 105
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 106 GKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQRREQYAADITYGTNNEFGFDY 185
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 186 LRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANrWYGEFAKVVRRLERERDYEVDEKKRTVGVLE 265
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE-LYVQANKFAKALEKEVDYEVDEKNRAVLLTE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 266 PGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGRILPGRRYNEGMHQAIEAKEGV 345
Cdd:TIGR00963 240 QGMKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 346 AIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDMVRIDQKDLVYKSEEGKFDAVVADIV 425
Cdd:TIGR00963 320 EIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIK 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 426 ERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKGAVTVATNMAGRGTDIMLggnaefta 505
Cdd:TIGR00963 400 ERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-------- 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 506 iaemaqrgldpaenaeeyeaawpevlekakasvaaehEEVTELGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYL 585
Cdd:TIGR00963 472 -------------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFL 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 586 SMQDDLMRLFNSGLAESMMTRAGFPEDMPLESKIVTRGIQSAQSQVEARNFEIRKNVLKYDDVMSRQREVIYDQRRRVLE 665
Cdd:TIGR00963 515 SLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLE 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 666 GEDLQEQVAHFRTDVLTDYVQLATAEG-RPEDWDLEALWTSLRGVFP--ITITPEEVVEqaggetrLSSELILREVLSDA 742
Cdd:TIGR00963 595 SEDLSELILQMLESTLDRIVDAYINEEkLSEEWDLEGLIEKLKTLFLldGDLTPEDLEN-------LTSEDLKELLLEKI 667
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2111155961 743 EHAYAEREAQLGEANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGFQLFNAMTDAI 817
Cdd:TIGR00963 668 RAAYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
1-831 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1058.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 1 MTAILEKVLRlGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQ 80
Cdd:PRK12906 1 MANILKKWFD-NDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 81 RHFDVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNL 160
Cdd:PRK12906 80 RPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSM 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 161 TPAQRREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGdANRWYGEFA 240
Cdd:PRK12906 160 SPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEK-ATDLYIRAD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 241 KVVRRLERER-----------DYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYV 309
Cdd:PRK12906 239 RFVKTLIKDEaedgdddedtgDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYV 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 310 VLNGEVLIVDEHTGRILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKL 389
Cdd:PRK12906 319 VQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNM 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 390 GVVPIPTNRDMVRIDQKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHARE 469
Cdd:PRK12906 399 EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKE 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 470 AAIVAQAGRKGAVTVATNMAGRGTDIMLGGNaeftaiaemaqrgldpaenaeeyeaawpevlekakasvaaeheeVTELG 549
Cdd:PRK12906 479 AEIIMNAGQRGAVTIATNMAGRGTDIKLGPG--------------------------------------------VKELG 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 550 GLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNSGLAESMMTRAGFPED-MPLESKIVTRGIQSAQ 628
Cdd:PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMNDDdQVIESRMITRQVESAQ 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 629 SQVEARNFEIRKNVLKYDDVMSRQREVIYDQRRRVLEG-EDLQEQVAHFRTDVLTDYVQLATaEGRPEDWDLEAlwtsLR 707
Cdd:PRK12906 595 KRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINEdKDLKEVLMPMIKRTVDRQVQMYT-QGDKKDWDLDA----LR 669
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 708 GVFPITITPEEVVEQAGGETRLSSELILReVLSDAEHAYAEREAQLGEAN-MRQLERRVVLSVLDRKWREHLYEMDYLKE 786
Cdd:PRK12906 670 DFIVSAMPDEETFDFEDLKGKSPEELKKR-LLDIVEDNYAEKEKQLGDPTqMLEFEKVVILRVVDSHWTDHIDAMDQLRQ 748
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 2111155961 787 GIGLRAMAQRDPLVEYQREGFQLFNAMTDAIKEESVQYLYNLEVQ 831
Cdd:PRK12906 749 SIGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQIR 793
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
12-818 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 949.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 12 GEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFDVQLMGGA 91
Cdd:CHL00122 7 NNKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDVQLIGGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 92 ALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQRREQYAA 171
Cdd:CHL00122 87 VLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 172 DITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANRwYGEFAKVVRRLERERD 251
Cdd:CHL00122 167 DITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDK-YIVADELAKYLEKNVH 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 252 YEVDEKKRTVGVLEPGIARVEDYLGIDNLYeSLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGRILPGRRY 331
Cdd:CHL00122 246 YEVDEKNKNVILTEQGILFIEKILKIEDLY-SANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRW 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 332 NEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDMVRIDQKDLVYK 411
Cdd:CHL00122 325 SDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYK 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 412 SEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQH--AREAAIVAQAGRKGAVTVATNMA 489
Cdd:CHL00122 405 DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEnvRRESEIVAQAGRKGSITIATNMA 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 490 GRGTDIMLGGNAEFTAIAEM------------------------------------AQRGLDPAENAEEYEAAWP----- 528
Cdd:CHL00122 485 GRGTDIILGGNPEFKLKKELydlllsyksnekistisqnflnilnslkndlkflslSDFENLKILNEASEISIPKnsyql 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 529 -------EVLEKAKASVAAEHEEVTELGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNSGLAE 601
Cdd:CHL00122 565 slrflynELLEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFGGDKIQ 644
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 602 SMMTRAGfPEDMPLESKIVTRGIQSAQSQVEARNFEIRKNVLKYDDVMSRQREVIYDQRRRVLEGEDLQEQVAHFRTDVL 681
Cdd:CHL00122 645 NLMQTLN-LDDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQSLRDWILAYGEQVI 723
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 682 TDYVQLATAEGRPEDwDLEALWTSLRGVFPITITpeevVEQAGGETRLSSEL---ILREVLSdaehAYAEREAQL---GE 755
Cdd:CHL00122 724 DDIITFLKSRKNPNN-KFINLINKFKELLKLPLC----FNKSDLNTLNSGELkkfLYQQFWI----SYDLKELYLeqiGT 794
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2111155961 756 ANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGFQLFNAMTDAIK 818
Cdd:CHL00122 795 GLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIR 857
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
4-834 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 934.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 4 ILEKVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHF 83
Cdd:PRK09200 1 MKKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 84 DVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNL-TP 162
Cdd:PRK09200 81 DVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIdDA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 163 AQRREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANrWYGEFAKV 242
Cdd:PRK09200 161 SEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSN-LYHIAAKF 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 243 VRRLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHT 322
Cdd:PRK09200 240 VKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 323 GRILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDMVR 402
Cdd:PRK09200 320 GRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIR 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 403 IDQKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKGAV 482
Cdd:PRK09200 400 IDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAV 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 483 TVATNMAGRGTDIMLGgnaeftaiaemaqrgldpaenaeeyeaawpevlekakasvaaehEEVTELGGLYVLGTERHESR 562
Cdd:PRK09200 480 TVATNMAGRGTDIKLG--------------------------------------------EGVHELGGLAVIGTERMESR 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 563 RIDNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNSGLAE---SMMTRAGFPEDMPLESKIVTRGIQSAQSQVEARNFEIR 639
Cdd:PRK09200 516 RVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEklkKKLKTDAQRLTGLLFNRKVHKIVVKAQRISEGAGYSAR 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 640 KNVLKYDDVMSRQREVIYDQRRRVLEGE--DLQEQVAHFRTDVLTDYVQLATAEG-RPEDWDLEALWTSLRGVFPITITP 716
Cdd:PRK09200 596 EYALELDDVINIQRDVVYKERNRLLEEDdrDLIDIVILMIDVYLEAVAEEYLLEKsLLEEWIYENLSFQLNEILSNTNFP 675
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 717 eevveqaggetrlSSELILREVLSDAEHAYAEREAQLGEANM-RQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQ 795
Cdd:PRK09200 676 -------------DKKEVVQFLLEEAEKQLKEKRNKLPSATLyNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQ 742
|
810 820 830
....*....|....*....|....*....|....*....
gi 2111155961 796 RDPLVEYQREGFQLFNAMTDAIKEESVQYLYNLEVQVQE 834
Cdd:PRK09200 743 RNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFDK 781
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
15-828 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 886.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 15 RILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFDVQLMGGAALH 94
Cdd:TIGR04397 11 RELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYDVQLIGGLVLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 95 LGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQRREQYAADIT 174
Cdd:TIGR04397 91 EGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASEKKEAYQADIT 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 175 YGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGpASGDANRWYGEFAKVVRRLERERDYEV 254
Cdd:TIGR04397 171 YGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAG-KTGSSSELHYICARIIKSFEETEDYEY 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 255 DEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGRILPGRRYNEG 334
Cdd:TIGR04397 250 DPETKAASLTEEGITKIERAFGIDNLYDLEHQTLYHYLIQALRAHVLFKRDVDYIVKDGKIELVDMFTGRIMEGRSLSDG 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 335 MHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDMVRIDQKDLVYKSEE 414
Cdd:TIGR04397 330 LHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGMDVVQIPTNRPRIRVDWPDRVFMTYE 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 415 GKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKGAVTVATNMAGRGTD 494
Cdd:TIGR04397 410 AKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVEQEADLIALAGQKGQVTIATNMAGRGTD 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 495 IMLGgnaeftaiaemaqrgldpaenaeeyeaawpevlekakasvaaehEEVTELGGLYVLGTERHESRRIDNQLRGRSGR 574
Cdd:TIGR04397 490 ILLG--------------------------------------------EGVHELGGLHVIGTERHESRRIDNQLRGRSGR 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 575 QGDPGESRFYLSMQDDLMRLFNSGLAESMMTRAGFPEDMPLESKIVTRGIQSAQSQVEARNFEIRKNVLKYDDVMSRQRE 654
Cdd:TIGR04397 526 QGDPGSSQFIISLEDDMFRRYAAEELEKWKKKLKTDETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLKLDDVINEQRN 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 655 VIYDQRRRVLEGEDLQEQVAHFRTDVLTDYVQLATAEGR-PEDWDLEALWTSLRGVFPITITPEevveqaggETRLSSEL 733
Cdd:TIGR04397 606 VIYQLRDKLLEEEDAISEVLKMIRSAVEQIIDQYCPEEVlPEEWDLERLTEELNRIFPVTFVTF--------DKRIADKE 677
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 734 ILREVLSDAEHAYAEREAQLGEANMRQLE-RRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGFQLFNA 812
Cdd:TIGR04397 678 ELKDLVKDTYEQYIAALEKLPENEEIQMRlKHVMLSVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKEGLELFEA 757
|
810
....*....|....*.
gi 2111155961 813 MTDAIKEESVQYLYNL 828
Cdd:TIGR04397 758 MYQNIEREICTELARL 773
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
15-829 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 861.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 15 RILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFDVQLMGGAALH 94
Cdd:PRK12903 12 TEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDVQIIGGIILD 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 95 LGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQRREQYAADIT 174
Cdd:PRK12903 92 LGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAYACDIT 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 175 YGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANRWYG--EFakvVRRLErERDY 252
Cdd:PRK12903 172 YSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAadQF---VRTLK-EDDY 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 253 EVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGRILPGRRYN 332
Cdd:PRK12903 248 KIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYS 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 333 EGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDMVRIDQKDLVYKS 412
Cdd:PRK12903 328 EGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGT 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 413 EEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKGAVTVATNMAGRG 492
Cdd:PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGAITIATNMAGRG 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 493 TDIMLGgnaeftaiaemaqrgldpaenaeeyeaawpevlekakasvaaehEEVTELGGLYVLGTERHESRRIDNQLRGRS 572
Cdd:PRK12903 488 TDIKLS--------------------------------------------KEVLELGGLYVLGTDKAESRRIDNQLRGRS 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 573 GRQGDPGESRFYLSMQDDLMRLFnsglAESMMTRAGFPE--DMPLESKIVTRGIQSAQSQVEARNFEIRKNVLKYDDVMS 650
Cdd:PRK12903 524 GRQGDVGESRFFISLDDQLFRRF----SNFDKIKEAFKKlgDDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIR 599
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 651 RQREVIYDQRRRVLEGEDLQEQVAHFRT---DVLTDYVQLATAEGRPEDWDL-EALWTSLRGVFPITITPEEVVEQagge 726
Cdd:PRK12903 600 QQRDLIYAQRDLILIADDLSHVIEKMISravEQILKNSFIILKNNTINYKELvEFLNDNLLRITHFKFSEKDFENY---- 675
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 727 trlsSELILREVLSDA-EHAYAEREAQL----GEANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVE 801
Cdd:PRK12903 676 ----HKEELAQYLIEAlNEIYFKKRQVIldkiALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQV 751
|
810 820
....*....|....*....|....*...
gi 2111155961 802 YQREGFQLFNAMTDAIKEESVQYLYNLE 829
Cdd:PRK12903 752 YTEEGTKKFNILLQEIAYDVIVSLFNNP 779
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
15-841 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 819.65 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 15 RILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADG-------------------------------------- 56
Cdd:PRK12901 15 RDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAvadidakieelkaeaiesldiderediyaqidklekea 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 57 ----EK-LDDLLPEAFAAVREASRRTLGQR---------------------------------------------HFDVQ 86
Cdd:PRK12901 95 yeilEKvLDEILPEAFAIVKETARRFAENEeievtatdfdrelaatkdfvtiegdkaiwknhwdaggneitwdmvHYDVQ 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 87 LMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTIlSNLTP--AQ 164
Cdd:PRK12901 175 LIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCI-DKHQPnsEA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 165 RREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANRWYGEFAKVVR 244
Cdd:PRK12901 254 RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDQEFEELKPRVE 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 245 RL-ERERDY----------------------------------------------------------------------- 252
Cdd:PRK12901 334 RLvEAQRKLatqflaeakkliaegdkkegglallrayrglpknkalikflseegikallqktenfymqdnnrempevdee 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 253 ---EVDEKKRTVGVLEPGI----------------------ARVEDYLGIDNLYE-----------SLNTPLIGFLNNAI 296
Cdd:PRK12901 414 lyfVIDEKNNSVELTDKGIdyitgndedpdffvlpdigtelAEIENEGGLDEEEEaekkeelfqdySVKSERVHTLNQLL 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 297 KAKELFRRDKDYVVLNGEVLIVDEHTGRILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTA 376
Cdd:PRK12901 494 KAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTA 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 377 ETEAAEFQGTYKLGVVPIPTNRDMVRIDQKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGV 456
Cdd:PRK12901 574 ETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKI 653
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 457 PHEVLNAKQHAREAAIVAQAGRKGAVTVATNMAGRGTDIMLGgnaeftaiaemaqrgldpaenaeeyeaawpevlekaka 536
Cdd:PRK12901 654 PHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS-------------------------------------- 695
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 537 svaaehEEVTELGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNSGLAESMMTRAGFPEDMPLE 616
Cdd:PRK12901 696 ------PEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEVIQ 769
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 617 SKIVTRGIQSAQSQVEARNFEIRKNVLKYDDVMSRQREVIYDQRRRVLEGEDLQEQVAHFRTDVLTDYVQLATAEGRPED 696
Cdd:PRK12901 770 HSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVENNKVANDYKG 849
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 697 WDLEALWTsLRGVFPIT------ITPEEVVEQAGGE--------TRLSSEL---ILREVLSDAEHAY---------AERE 750
Cdd:PRK12901 850 FKFELIRT-LAMESPITeeefnkLKKDELTDKLYDAalenyqrkMERIAEIafpVIKQVYEEQGNMYerivvpftdGKRT 928
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 751 AQL-----------GEANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGFQLFNAMTDAIKE 819
Cdd:PRK12901 929 LNVvtnlkeayeteGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNMVDKVNR 1008
|
1050 1060
....*....|....*....|....
gi 2111155961 820 ESVQYLYNLEVQVQEPTDA--AAP 841
Cdd:PRK12901 1009 EVISFLFKGEIPVQEAPEIreAAP 1032
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-384 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 728.07 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 5 LEKVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFD 84
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 85 VQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQ 164
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 165 RREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANRWYGEFAKVVR 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDESSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 245 RLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGR 324
Cdd:smart00957 241 RLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFTGR 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 325 ILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQ 384
Cdd:smart00957 321 VMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
17-818 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 716.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 17 LKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFDVQLMGGAALHLG 96
Cdd:TIGR03714 6 LKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIVLHQG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 97 NIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILS-----NLTPAQRREQYAA 171
Cdd:TIGR03714 86 NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVddpdeEYDANEKRKIYNS 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 172 DITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANrWYGEFAKVVRRLERERD 251
Cdd:TIGR03714 166 DIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSN-LYHIADTFVRTLKEDVD 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 252 YEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGRILPGRRY 331
Cdd:TIGR03714 245 YIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 332 NEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDMVRIDQKDLVYK 411
Cdd:TIGR03714 325 QSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYA 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 412 SEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKGAVTVATNMAGR 491
Cdd:TIGR03714 405 TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATSMAGR 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 492 GTDIMLGgnaeftaiaemaqrgldpaenaeeyeaawpevlekakasvaaehEEVTELGGLYVLGTERHESRRIDNQLRGR 571
Cdd:TIGR03714 485 GTDIKLG--------------------------------------------KGVAELGGLAVIGTERMENSRVDLQLRGR 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 572 SGRQGDPGESRFYLSMQDDLMRLF-NSGLAE---SMMTRAGFPEDMPLESKIVTRGIQSAQSQVEARNFEIRKNVLKYDD 647
Cdd:TIGR03714 521 SGRQGDPGSSQFFVSLEDDLIKRWsPSWLKKyykKYSVKDSKLKPSALFKRRFRKIVEKAQRASEDKGESAREQTNEFEE 600
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 648 VMSRQREVIYDQRRRVLEGED-LQEQVAHFRTDVLTDYV--QLATAEGRPEDWDLEALWTSLRGVF-PITI-TPEEVVEq 722
Cdd:TIGR03714 601 SLSIQRENIYAERNRLIEGSDfLDDDVDQIIDDVFNMYAeeQDLSNKSLLKRFILENLSYQFKNDPdEFDLkNKEAIKD- 679
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 723 aggetrlsselILREVlsdAEHAYAEREAQLGEANMR-QLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVE 801
Cdd:TIGR03714 680 -----------FLKEI---ADKELSEKKKVLNNDYLFnDFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNGQRNPIFE 745
|
810
....*....|....*..
gi 2111155961 802 YQREGFQLFNAMTDAIK 818
Cdd:TIGR03714 746 YHKEALESYEYMKKEIK 762
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-383 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 669.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 5 LEKVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFD 84
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 85 VQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQ 164
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 165 RREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASgDANRWYGEFAKVVR 244
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSE-DDSELYREADRLVK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 245 RLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGR 324
Cdd:pfam07517 240 SLEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTGR 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2111155961 325 ILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEF 383
Cdd:pfam07517 320 VMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
1-646 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 635.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 1 MTAILEKVLRLGEGRILKKLSG----IAAQVNALEDSFLSLSDAELREETDRFRARL-ADGEKLDDLLPEAFAAVREASR 75
Cdd:PRK12898 18 LDRWLERVLGRLAGRVRGRAARrqrlLADRVLAAAEALAGLSEEALRARSLALRARLrARDGFRDALLAEAFALVREASG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 76 RTLGQRHFDVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGT 155
Cdd:PRK12898 98 RVLGQRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGC 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 156 ILSNLTPAQRREQYAADITYGTNNEFGFDYLRDNMAW-------------------SVDDLVQRGHHFAIVDEVDSILID 216
Cdd:PRK12898 178 VVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALgqrasdarlaleslhgrssRSTQLLLRGLHFAIVDEADSVLID 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 217 EARTPLIISGPASGDANR-WYGEFAKVVRRLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNA 295
Cdd:PRK12898 258 EARTPLIISAPAKEADEAeVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQA 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 296 IKAKELFRRDKDYVVLNGEVLIVDEHTGRILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGT 375
Cdd:PRK12898 338 LSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGT 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 376 AETEAAEFQGTYKLGVVPIPTNRDMVRIDQKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQG 455
Cdd:PRK12898 418 AREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAG 497
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 456 VPHEVLNAKQHAREAAIVAQAGRKGAVTVATNMAGRGTDIMLGgnaeftaiaemaqrgldpaenaeeyeaawpevlekak 535
Cdd:PRK12898 498 LPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------------------------- 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 536 asvaaehEEVTELGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNS--GLAESMMTRAGFPEDM 613
Cdd:PRK12898 541 -------PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGsrGLAIRRMELLGPRGGR 613
|
650 660 670
....*....|....*....|....*....|...
gi 2111155961 614 PLESKIVTRgiqsAQSQVEARNFEIRKNVLKYD 646
Cdd:PRK12898 614 ALGALLLRR----AQRRAERLHARARRALLHAD 642
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
7-835 |
0e+00 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 558.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 7 KVLRLGEGRILKKLSGIAAQVNALEDSFLSLSDAELREetdrfRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFDVQ 86
Cdd:TIGR04221 7 KALGSSTERNQKRSLAIVPAAASRMKELSALDDEELTK-----AARDLVLSGEAADAAQFLAILREAAERTLGMRPFDVQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 87 LMGGAALHLGNIAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQRR 166
Cdd:TIGR04221 82 LLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 167 EQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQRGHHFAIVDEVDSILIDEARTPLIISGPASGDANRwyGEFAKVVRRL 246
Cdd:TIGR04221 162 AAYACDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPGEAPR--GRITDLVRRL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 247 ERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLY--ESLNTPLIGfLNNAIKAKELFRRDKDYVVLNGEVLIVDEHTGR 324
Cdd:TIGR04221 240 REDKHYTVDEDGRNVHLTEDGARAVEAELGIDDLYseEHVGTTLVQ-VNVALHAHALLIRDVHYIVRDGKVALIDASRGR 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 325 ILPGRRYNEGMHQAIEAKEGVAIKAENQTLATITLQNYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPTNRDMVRID 404
Cdd:TIGR04221 319 VAQLQRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPNIRFD 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 405 QKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKGAVTV 484
Cdd:TIGR04221 399 EADRVYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAEEAAIIAEAGDIGAVTV 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 485 ATNMAGRGTDIMLGGNAEftaiaemaqrgldpaenaeeyeaawpevlekakasvaAEHEEVTELGGLYVLGTERHESRRI 564
Cdd:TIGR04221 479 STQMAGRGTDIRLGGSDE-------------------------------------ADHDRVAELGGLHVIGTGRHRTARL 521
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 565 DNQLRGRSGRQGDPGESRFYLSMQDDLMRLFNSGLAESMMTRagfpEDMPLESKIVTRGIQSAQSQVEARNFEIRKNVLK 644
Cdd:TIGR04221 522 DNQLRGRAGRQGDPGSSVFFVSLEDDVVAVGGAGETVPAQPA----EDGRIESPRVQDFVDHAQRVAEGQLLEIHANTWR 597
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 645 YDDVMSRQREVIYDQRRRVLegedlqeqvahfRTDVLtdyvqlataegrpedWDlealwtslrgvfpititpeevveqag 724
Cdd:TIGR04221 598 YNQLIAQQRDIIDERRETLL------------DTDTA---------------WQ-------------------------- 624
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 725 getrlsselilrEVLSDAEHAYAEREAQLGEANMRQLERRVVLSVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQR 804
Cdd:TIGR04221 625 ------------ELSERAADRAAELKKEVSEDALERAAREIMLYHLDRGWAEHLAYLDDVRESIHLRALGRETPLDEFHR 692
|
810 820 830
....*....|....*....|....*....|.
gi 2111155961 805 EGFQLFNAMTDAIKEESVQYLYNLEVQVQEP 835
Cdd:TIGR04221 693 MAVRAFKELAQRAVDKAVETFEEVEIDADGA 723
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
41-396 |
8.26e-130 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 389.97 E-value: 8.26e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 41 ELREETDRFRARLADGEKLDDLLPEAFAAVREASRRTLGQRHFDVQLMGGAALHLGNIAEMKTGEGKTLVATAPAYLNAL 120
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 121 TGKGVHVVTVNDYLAGYQADLMGRVYRFLGLTTGTILSNLTPAQRREQYAADITYGTNNEFGFDYLRDNMAWSVDDLVQR 200
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 201 GHHFAIVDEVDSILIDEARTPLIISGpasgdanrwygefakvvrrlererdyevdekkrtvgvlepgiarvedylgidnl 280
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 281 yeslntpligflnnaikakelfrrdkdyvvlngevlivdehtgrilpgrrynegmhqaieakegvaikaenqTLATITLQ 360
Cdd:cd17928 187 ------------------------------------------------------------------------TLATITFQ 194
|
330 340 350
....*....|....*....|....*....|....*.
gi 2111155961 361 NYFRLYSKLGGMTGTAETEAAEFQGTYKLGVVPIPT 396
Cdd:cd17928 195 NYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
614-829 |
6.58e-101 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 313.66 E-value: 6.58e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 614 PLESKIVTRGIQSAQSQVEARNFEIRKNVLKYDDVMSRQREVIYDQRRRVLEGEDLQEQVAHFRTDVLTDYVQLAT-AEG 692
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIpPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 693 RPEDWDLEALWTSLRGVFPItitpEEVVEQAGGETRLSSELILREVLSDAEHAYAEREAQLGEANMRQLERRVVLSVLDR 772
Cdd:pfam07516 81 SPEEWDLEGLKEALNEIFGL----ELPISEWEEEEDLDKEELKERLLEAAEEAYEEKEEEIGPELMRELERVVLLQVIDS 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2111155961 773 KWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGFQLFNAMTDAIKEESVQYLYNLE 829
Cdd:pfam07516 157 KWKEHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
402-586 |
1.89e-81 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 259.40 E-value: 1.89e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 402 RIDQKDLVYKSEEGKFDAVVADIVERHAKGQPVLVGTTSVEKSELLSAKLKKQGVPHEVLNAKQHAREAAIVAQAGRKGA 481
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 482 VTVATNMAGRGTDIMLGGNAEftaiaemaqrgldpaenaeeyeaawpevlekakasvaaeheevtELGGLYVLGTERHES 561
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGNVE--------------------------------------------ELGGLHVIGTERHES 116
|
170 180
....*....|....*....|....*
gi 2111155961 562 RRIDNQLRGRSGRQGDPGESRFYLS 586
Cdd:cd18803 117 RRIDNQLRGRAGRQGDPGSSRFYLS 141
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
231-340 |
2.40e-53 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 181.07 E-value: 2.40e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 231 DANRWYGEFAKVVRRLERERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRDKDYVV 310
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDEDYEVDEKAKTVELTEEGIEKAEKLLGIDNLYDPENIELVHHINQALKAHHLFKRDVDYIV 80
|
90 100 110
....*....|....*....|....*....|
gi 2111155961 311 LNGEVLIVDEHTGRILPGRRYNEGMHQAIE 340
Cdd:pfam01043 81 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
227-340 |
5.22e-51 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 174.56 E-value: 5.22e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 227 PASGDANrWYGEFAKVVRRLER-ERDYEVDEKKRTVGVLEPGIARVEDYLGIDNLYESLNTPLIGFLNNAIKAKELFRRD 305
Cdd:smart00958 1 PAEDSSE-LYKRADELVPTLKKdEEDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPENIELVHHVNQALRAHKLFKRD 79
|
90 100 110
....*....|....*....|....*....|....*
gi 2111155961 306 KDYVVLNGEVLIVDEHTGRILPGRRYNEGMHQAIE 340
Cdd:smart00958 80 VDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
98-223 |
8.57e-15 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 72.44 E-value: 8.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 98 IAEMKTGEGKTLVATAPAYLNALT-GKGVHVVTVNDYLAGYQADLMgRVYRFLGLTTGTILSNLTPAQRREQYA--ADIT 174
Cdd:cd00046 5 LITAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERL-RELFGPGIRVAVLVGGSSAEEREKNKLgdADII 83
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2111155961 175 YGTNNEFGFDYLRDnmawsvDDLVQRGHHFAIVDEVDSILIDEARTPLI 223
Cdd:cd00046 84 IATPDMLLNLLLRE------DRLFLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
98-136 |
3.92e-08 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 51.37 E-value: 3.92e-08
10 20 30
....*....|....*....|....*....|....*....
gi 2111155961 98 IAEMKTGEGKTLVATAPAYLNALTGKGVHVVTVNDYLAG 136
Cdd:cd17912 3 LHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAH 41
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
548-584 |
3.00e-07 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 48.31 E-value: 3.00e-07
10 20 30
....*....|....*....|....*....|....*..
gi 2111155961 548 LGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFY 584
Cdd:cd09300 22 PELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| SF2_C_DEAD |
cd18787 |
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse ... |
403-495 |
3.03e-06 |
|
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis, and RNA degradation. They are superfamily (SF)2 helicases that, similar to SF1, do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350174 [Multi-domain] Cd Length: 131 Bit Score: 47.50 E-value: 3.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 403 IDQKdLVYKSEEGKFDAVVADIVERHAKGQpVLVGTTSVEKSELLSAKLKKQGVPHEVLNAK--QHAREAAIvaQAGRKG 480
Cdd:cd18787 1 IKQL-YVVVEEEEKKLLLLLLLLEKLKPGK-AIIFVNTKKRVDRLAELLEELGIKVAALHGDlsQEERERAL--KKFRSG 76
|
90
....*....|....*..
gi 2111155961 481 AVT--VATNMAGRGTDI 495
Cdd:cd18787 77 KVRvlVATDVAARGLDI 93
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
83-224 |
8.08e-03 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 38.63 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111155961 83 FDVQLMGGAALHLGN---IAEMKTGEGKTLVATAPAYLNALTGKGVHVV----TVNdyLAGYQADLMGRVYRFLGLTTGT 155
Cdd:smart00487 10 RPYQKEAIEALLSGLrdvILAAPTGSGKTLAALLPALEALKRGKGGRVLvlvpTRE--LAEQWAEELKKLGPSLGLKVVG 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2111155961 156 ILSNLTPAQRREQYA---ADITYGTnnefgFDYLRDNMawSVDDLVQRGHHFAIVDEVDSILiDEARTPLII 224
Cdd:smart00487 88 LYGGDSKREQLRKLEsgkTDILVTT-----PGRLLDLL--ENDKLSLSNVDLVILDEAHRLL-DGGFGDQLE 151
|
|
| |
