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Conserved domains on  [gi|2106233302|gb|UBY12940|]
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cytochrome b, partial (mitochondrion) [Reithrodontomys megalotis]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 698.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327

                         330       340
                  ....*....|....*....|....*..
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00100  328 LVADLLTLTWIGGQPVEHPFIIIGQLA 354
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 698.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327

                         330       340
                  ....*....|....*....|....*..
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00100  328 LVADLLTLTWIGGQPVEHPFIIIGQLA 354
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-347 1.19e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 355.64  E-value: 1.19e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   4 LKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASMF 83
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  84 FICLFLHVGRGMYYGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 161
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 162 SVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPSG----LNSDADKIPFHPYYTIKDILGAILLLMVLMILV 236
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 237 LFFPDilGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIP--NKLGGVLALILSILVLALLPLLQTSKQRGLTFWPIT 314
Cdd:COG1290   260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350
                  ....*....|....*....|....*....|...
gi 2106233302 315 QILFWILVANLLILTWIGGQPVehPFVVIGQLA 347
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANPP--IATLLGSIN 368
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 3.45e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 288.88  E-value: 3.45e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   2 PLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  82 MFFICLFLHVGRGMYYGSY--TFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2106233302 160 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 2.40e-89

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 266.17  E-value: 2.40e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  11 FIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  91 VGRGMYYG--SYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2106233302 169 TRFFAFHFILPFIITALVIVHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 251-287 2.28e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.10  E-value: 2.28e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2106233302 251 PANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLAL 287
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLM 101
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 698.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00100    8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00100   88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00100  168 FSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00100  248 DLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWL 327

                         330       340
                  ....*....|....*....|....*..
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00100  328 LVADLLTLTWIGGQPVEHPFIIIGQLA 354
CYTB MTH00119
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 636.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00119    9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00119   89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00119  169 FSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00119  249 NLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWT 328

                         330       340
                  ....*....|....*....|....*..
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00119  329 LVANLLILTWIGSQPVEHPFIIIGQLA 355
CYTB MTH00131
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 635.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00131    8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00131   88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00131  168 FSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00131  248 NLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWT 327

                         330       340
                  ....*....|....*....|....*..
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00131  328 LVADVLILTWIGGMPVEHPFIIIGQVA 354
CYTB MTH00074
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 618.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00074    9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00074   89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00074  169 FSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00074  249 NLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWL 328

                         330       340
                  ....*....|....*....|....*..
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00074  329 LVANTLILTWIGGQPVEDPFIEIGQAA 355
CYTB MTH00156
cytochrome b; Provisional
 4-346 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 605.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   4 LKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASMF 83
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  84 FICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 163
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 164 DKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFPDIL 243
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 244 GDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWILVA 323
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340
                  ....*....|....*....|...
gi 2106233302 324 NLLILTWIGGQPVEHPFVVIGQL 346
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQI 343
CYTB MTH00191
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 604.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00191    5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00191   85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00191  165 FSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSP 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00191  245 NLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWL 324

                         330       340
                  ....*....|....*....|....*..
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00191  325 WVANFILLTWLGGQPVEDPFILLGQIS 351
CYTB MTH00145
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 572.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00145    9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00145   89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00145  169 FSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00145  249 NLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWI 328

                         330       340
                  ....*....|....*....|....*
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQ 345
Cdd:MTH00145  329 FVGNFFILTWIGACPVEEPYETIGQ 353
CYTB MTH00034
cytochrome b; Validated
 1-347 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 550.85  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00034    8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00034   88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00034  168 FSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFP 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00034  248 TALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWL 327

                         330       340
                  ....*....|....*....|....*..
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00034  328 LIATFFILTWIGSQPVEYPFILLGQVA 354
CYTB MTH00016
cytochrome b; Validated
 1-345 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 550.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00016    9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00016   89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00016  169 FSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00016  249 NILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWL 328

                         330       340
                  ....*....|....*....|....*
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQ 345
Cdd:MTH00016  329 LVSNFLLLTWIGGRPVEPPYEFLGQ 353
CYTB MTH00224
cytochrome b; Provisional
 1-346 8.31e-174

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 487.51  E-value: 8.31e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00224    9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00224   89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00224  169 FAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEP 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00224  249 NLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWL 328

                         330       340
                  ....*....|....*....|....*.
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQL 346
Cdd:MTH00224  329 LVTSWAILTWIGGRPVEDPFEGIGQV 354
CYTB MTH00022
cytochrome b; Validated
 1-347 1.38e-172

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 484.59  E-value: 1.38e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   1 HPLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGA 80
Cdd:MTH00022    7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGG 160
Cdd:MTH00022   87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 161 FSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFP 240
Cdd:MTH00022  167 FSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAP 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00022  247 NLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWF 326

                         330       340
                  ....*....|....*....|....*..
gi 2106233302 321 LVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00022  327 LIVDFILLTWIGSQVVEEPFILIGQLL 353
CYTB MTH00053
cytochrome b; Provisional
 2-347 1.79e-169

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 476.89  E-value: 1.79e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   2 PLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGAS 81
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  82 MFFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 161
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 162 SVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFPD 241
Cdd:MTH00053  170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 242 ILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWIL 321
Cdd:MTH00053  250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFL 329

                         330       340
                  ....*....|....*....|....*.
gi 2106233302 322 VANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:MTH00053  330 VGDFFLLTWIGGQPVEEPYILIGQIA 355
CYTB MTH00033
cytochrome b; Provisional
 3-347 2.47e-130

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 377.36  E-value: 2.47e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   3 LLKIVNEsFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASM 82
Cdd:MTH00033    8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  83 FFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 162
Cdd:MTH00033   87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 163 VDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVL--FFP 240
Cdd:MTH00033  167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIE 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 241 DILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWI 320
Cdd:MTH00033  247 TLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWF 326

                         330       340
                  ....*....|....*....|....*...
gi 2106233302 321 LVANLLILTWIGGQPV-EHPFVVIGQLA 347
Cdd:MTH00033  327 IVGDFIILTWIGSAPAgADPYVLIGRIA 354
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-347 1.19e-121

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 355.64  E-value: 1.19e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   4 LKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASMF 83
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  84 FICLFLHVGRGMYYGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 161
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGE 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 162 SVDKATLTRFFAFH-FILPFIITALVIVHLLFLHETGSNNPSG----LNSDADKIPFHPYYTIKDILGAILLLMVLMILV 236
Cdd:COG1290   180 FPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLA 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 237 LFFPDilGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIP--NKLGGVLALILSILVLALLPLLQTSKQRGLTFWPIT 314
Cdd:COG1290   260 FFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR 337

                         330       340       350
                  ....*....|....*....|....*....|...
gi 2106233302 315 QILFWILVANLLILTWIGGQPVehPFVVIGQLA 347
Cdd:COG1290   338 TALGVAFIVFFIVLTILGANPP--IATLLGSIN 368
CYTB MTH00086
cytochrome b; Provisional
 5-346 1.85e-117

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 343.85  E-value: 1.85e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   5 KIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASMFF 84
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  85 ICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 164
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 165 KATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGaILLLMVLMILVLFFPDILG 244
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 245 DPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLqtsKQRGLTFWPITQILFWILVAN 324
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVV 316

                         330       340
                  ....*....|....*....|..
gi 2106233302 325 LLILTWIGGQPVEHPFVVIGQL 346
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQI 338
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-199 3.45e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 288.88  E-value: 3.45e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   2 PLLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGAS 81
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  82 MFFICLFLHVGRGMYYGSY--TFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 159
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2106233302 160 GFSVDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSN 199
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 3-346 5.64e-91

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 276.09  E-value: 5.64e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302   3 LLKIVNESFIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASM 82
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  83 FFICLFLHVGRGMYYGSYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFS 162
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 163 VDKATLTRFFAFHFILPFIITALVIVHLLFLHETGSNNP-SGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFPD 241
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 242 ILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGvLALILSILVLALLPLLQTSKqrglTFWPITQILFWIL 321
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLI 315

                         330       340
                  ....*....|....*....|....*
gi 2106233302 322 VANLLILTWIGGQPVEHPFVVIGQL 346
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQL 340
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-197 2.40e-89

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 266.17  E-value: 2.40e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  11 FIDLPTPSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  91 VGRGMYYG--SYTFTETWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 168
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2106233302 169 TRFFAFHFILPFIITALVIVHLLFLHETG 197
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 200-347 6.45e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 158.58  E-value: 6.45e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 200 NPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVLFFPDILGDPDNYTPANPLNTPAHIKPEWYFLFAYAILHSIPN 279
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2106233302 280 KLGGVLALILSILVLALLPLLQTSKQRGlTFWPITQILFWILVANLLILTWIGGQPVEHPFVVIGQLA 347
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-246 6.03e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 146.23  E-value: 6.03e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  81 SMFFICLFLHVGRGMYYGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 158
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 159 GGFSVDKATLTRFFAFHF-ILPFIITALVIVHLLFLHETGSNNPSGLNSDADKIPFHPYYTIKDILGAILLLMVLMILVL 237
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2106233302 238 FFPDILGDP 246
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 26-201 2.84e-42

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 146.40  E-value: 2.84e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  26 FGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTFTE- 104
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 105 -TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 182
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 2106233302 183 TALVIVHLLFLHETGSNNP 201
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
251-347 8.60e-36

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 125.28  E-value: 8.60e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302 251 PANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLALILSILVLALLPLLQTSKQRGLTFWPITQILFWILVANLLILTW 330
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90
                  ....*....|....*..
gi 2106233302 331 IGGQPVEHPFVVIGQLA 347
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIA 97
petB CHL00070
cytochrome b6
 17-202 1.69e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.99  E-value: 1.69e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  17 PSNISSWWNFGSLLGICLVIQILTGLFLAMHYTSDTSTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMY 96
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106233302  97 YGSYTFTE--TWNIGIVLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 174
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 2106233302 175 H-FILPFIITALVIVHLLFLHETGSNNPS 202
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 251-287 1.46e-07

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 50.39  E-value: 1.46e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2106233302 251 PANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLAL 287
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLM 101
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 251-287 1.50e-07

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 50.56  E-value: 1.50e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2106233302 251 PANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLAL 287
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMM 102
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 251-287 2.28e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.10  E-value: 2.28e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2106233302 251 PANPLNTPAHIKPEWYFLFAYAILHSIPNKLGGVLAL 287
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLM 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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