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Conserved domains on  [gi|21040263|ref|NP_631911|]
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transmembrane protein 190 precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TMEM190 super family cl21255
Transmembrane protein 190;
21-145 1.23e-68

Transmembrane protein 190;


The actual alignment was detected with superfamily member pfam15431:

Pssm-ID: 434712  Cd Length: 128  Bit Score: 204.49  E-value: 1.23e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21040263    21 GNGIQGFFYPWSCEGDIWDRESCGGQAAIDSPNLCLRLRCCYRNGVCYHQRPDENVRRKHMWALVWTCSGLLLLSCSICL 100
Cdd:pfam15431   1 GNGIQGFFYPWSCEGDVWDRESCGGQAAIENPNLCLRLRCCYRDGVCYHQRPDETMRRKHMWALGWTCGGLLFLISSICL 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 21040263   101 FWWAKRRDVLHMPGFLAGPCDMSKSVSLLSKHRGT--KKTPSTGSVP 145
Cdd:pfam15431  81 FWWAKRRDMLHLPGFLKGKCDLSRTVSLLSKDRGTlsDKKTSAGSVP 127
 
Name Accession Description Interval E-value
TMEM190 pfam15431
Transmembrane protein 190;
21-145 1.23e-68

Transmembrane protein 190;


Pssm-ID: 434712  Cd Length: 128  Bit Score: 204.49  E-value: 1.23e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21040263    21 GNGIQGFFYPWSCEGDIWDRESCGGQAAIDSPNLCLRLRCCYRNGVCYHQRPDENVRRKHMWALVWTCSGLLLLSCSICL 100
Cdd:pfam15431   1 GNGIQGFFYPWSCEGDVWDRESCGGQAAIENPNLCLRLRCCYRDGVCYHQRPDETMRRKHMWALGWTCGGLLFLISSICL 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 21040263   101 FWWAKRRDVLHMPGFLAGPCDMSKSVSLLSKHRGT--KKTPSTGSVP 145
Cdd:pfam15431  81 FWWAKRRDMLHLPGFLKGKCDLSRTVSLLSKDRGTlsDKKTSAGSVP 127
 
Name Accession Description Interval E-value
TMEM190 pfam15431
Transmembrane protein 190;
21-145 1.23e-68

Transmembrane protein 190;


Pssm-ID: 434712  Cd Length: 128  Bit Score: 204.49  E-value: 1.23e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21040263    21 GNGIQGFFYPWSCEGDIWDRESCGGQAAIDSPNLCLRLRCCYRNGVCYHQRPDENVRRKHMWALVWTCSGLLLLSCSICL 100
Cdd:pfam15431   1 GNGIQGFFYPWSCEGDVWDRESCGGQAAIENPNLCLRLRCCYRDGVCYHQRPDETMRRKHMWALGWTCGGLLFLISSICL 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 21040263   101 FWWAKRRDVLHMPGFLAGPCDMSKSVSLLSKHRGT--KKTPSTGSVP 145
Cdd:pfam15431  81 FWWAKRRDMLHLPGFLKGKCDLSRTVSLLSKDRGTlsDKKTSAGSVP 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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