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Conserved domains on  [gi|2103681981|ref|WP_224223177|]
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ATP-binding protein [Bacteroides fragilis]

Protein Classification

putative DNA binding domain-containing protein( domain architecture ID 1000485)

putative DNA binding domain-containing protein with a putative ATP-dependent DNA helicase RecG C-terminal domain, may bind DNA and function as a transcriptional regulator

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HATPase_c_4 super family cl38435
Putative ATP-dependent DNA helicase recG C-terminal; This domain may well interact selectively ...
 166-246 1.83e-10

Putative ATP-dependent DNA helicase recG C-terminal; This domain may well interact selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.


The actual alignment was detected with superfamily member pfam13749:

Pssm-ID: 463975  Cd Length: 88  Bit Score: 56.00  E-value: 1.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103681981 166 SDVVIKQYPDSITITNAGGFPSGVDMNNI-LTVNSVPRSKLMSEVLQKTGLVERSGQGVEKMFYNCIMEGKALPDYSGTD 244
Cdd:pfam13749   2 APIQIEIFDDRLEITSPGGLPGGVTVEDLgLDGVSKSRNPLLASLFRRLGLIEERGSGIRRILEAMEEAGLPEPEFIEDG 81


                  ..
gi 2103681981 245 SY 246
Cdd:pfam13749  82 DS 83
 
Name Accession Description Interval E-value
HATPase_c_4 pfam13749
Putative ATP-dependent DNA helicase recG C-terminal; This domain may well interact selectively ...
 166-246 1.83e-10

Putative ATP-dependent DNA helicase recG C-terminal; This domain may well interact selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.


Pssm-ID: 463975  Cd Length: 88  Bit Score: 56.00  E-value: 1.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103681981 166 SDVVIKQYPDSITITNAGGFPSGVDMNNI-LTVNSVPRSKLMSEVLQKTGLVERSGQGVEKMFYNCIMEGKALPDYSGTD 244
Cdd:pfam13749   2 APIQIEIFDDRLEITSPGGLPGGVTVEDLgLDGVSKSRNPLLASLFRRLGLIEERGSGIRRILEAMEEAGLPEPEFIEDG 81


                  ..
gi 2103681981 245 SY 246
Cdd:pfam13749  82 DS 83
 
Name Accession Description Interval E-value
HATPase_c_4 pfam13749
Putative ATP-dependent DNA helicase recG C-terminal; This domain may well interact selectively ...
 166-246 1.83e-10

Putative ATP-dependent DNA helicase recG C-terminal; This domain may well interact selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.


Pssm-ID: 463975  Cd Length: 88  Bit Score: 56.00  E-value: 1.83e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103681981 166 SDVVIKQYPDSITITNAGGFPSGVDMNNI-LTVNSVPRSKLMSEVLQKTGLVERSGQGVEKMFYNCIMEGKALPDYSGTD 244
Cdd:pfam13749   2 APIQIEIFDDRLEITSPGGLPGGVTVEDLgLDGVSKSRNPLLASLFRRLGLIEERGSGIRRILEAMEEAGLPEPEFIEDG 81


                  ..
gi 2103681981 245 SY 246
Cdd:pfam13749  82 DS 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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