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Conserved domains on  [gi|209981908|gb|ACJ05574|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Microcebus rufus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 5.95e-61

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 182.06  E-value: 5.95e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   1 MNLPLTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 209981908  81 SNNLKIAVTMALMLIIILALGLIYEWLQKGLEWEE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 5.95e-61

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 182.06  E-value: 5.95e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   1 MNLPLTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 209981908  81 SNNLKIAVTMALMLIIILALGLIYEWLQKGLEWEE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-84 2.77e-23

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 85.94  E-value: 2.77e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 209981908   18 VTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQSNNL 84
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFREL 65
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-113 1.09e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 74.77  E-value: 1.09e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908  11 IILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQSNNLKI-AVT 89
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWfGLI 93

                         90       100
                 ....*....|....*....|....
gi 209981908  90 MALMLIIILALGLIYEWLQKGLEW 113
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 5.95e-61

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 182.06  E-value: 5.95e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   1 MNLPLTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 209981908  81 SNNLKIAVTMALMLIIILALGLIYEWLQKGLEWEE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 2.75e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 142.37  E-value: 2.75e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   1 MNLPLT-LMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00136   1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 209981908  80 QSNNLKIAVTMALMLIIILALGLIYEWLQKGLEWEE 115
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 7.07e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 136.28  E-value: 7.07e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   3 LPLTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQSN 82
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 209981908  83 NLKIAVTMALMLIIILALGLIYEWLQKGLEWEE 115
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 5.87e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 126.15  E-value: 5.87e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   1 MNLPLTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 209981908  81 SNNLKIAVTMALMLIIILALGLIYEWLQKGLEW 113
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 7.50e-34

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 113.54  E-value: 7.50e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   1 MNLPLTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 209981908  81 SNNLKIAVTMALMLIIILALGLIYEWLQKGLEWEE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 5-113 1.05e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 102.67  E-value: 1.05e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   5 LTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQSNNl 84
Cdd:MTH00203   6 LFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSS- 84

                         90       100
                 ....*....|....*....|....*....
gi 209981908  85 kIAVTMALMLIIILALGLIYEWLQKGLEW 113
Cdd:MTH00203  85 -LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-113 2.03e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 86.75  E-value: 2.03e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   5 LTLMIDIILVLVLVTVAFWL-PQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQSNN 83
Cdd:MTH00161   4 IILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSN 83

                         90       100       110
                 ....*....|....*....|....*....|
gi 209981908  84 LKIAVTMALMLIIILALGLIYEWLQKGLEW 113
Cdd:MTH00161  84 MMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-84 2.77e-23

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 85.94  E-value: 2.77e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 209981908   18 VTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQSNNL 84
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFREL 65
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 5-115 4.49e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 86.06  E-value: 4.49e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   5 LTLMIDIILVLVLVTVAFWLPQLNMYA-EKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQSNN 83
Cdd:MTH00148   6 LSLLFALILSPVLLLLGLVLSKRSYSDrEKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSF 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 209981908  84 LKIAVTMALMLIIILALGLIYEWLQKGLEWEE 115
Cdd:MTH00148  86 SVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 6.47e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 83.12  E-value: 6.47e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   1 MNLPLTLMIDIILVLVLVTVAFWL--PQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMlsFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 209981908  79 SQSNNLKIAVTMALMLIIILALGLIYEWLQKGLEW 113
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-113 1.09e-18

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 74.77  E-value: 1.09e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908  11 IILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQSNNLKI-AVT 89
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWfGLI 93

                         90       100
                 ....*....|....*....|....
gi 209981908  90 MALMLIIILALGLIYEWLQKGLEW 113
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 5-113 1.56e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 74.51  E-value: 1.56e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   5 LTLMIDIILVLVLVTVAFWLPQLNMY-AEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQSNN 83
Cdd:MTH00012   6 IPMMISLILPPLVLGAAWVLAARSTAdREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTST 85

                         90       100       110
                 ....*....|....*....|....*....|
gi 209981908  84 LKIAVTMALMLIIILALGLIYEWLQKGLEW 113
Cdd:MTH00012  86 SKTVVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 5-114 7.72e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 72.82  E-value: 7.72e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   5 LTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQSNNL 84
Cdd:MTH00055  10 ILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQI 87

                         90       100       110
                 ....*....|....*....|....*....|.
gi 209981908  85 KI-AVTMALMLIIILALGLIYEWLQKGLEWE 114
Cdd:MTH00055  88 GLfGFWVMYLFLIILTIGLIYEWVKGGLEWE 118
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-114 7.29e-16

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 67.58  E-value: 7.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   7 LMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQSNNL-K 85
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIgW 92

                         90       100
                 ....*....|....*....|....*....
gi 209981908  86 IAVTMALMLIIILALGLIYEWLQKGLEWE 114
Cdd:PRK06602  93 LGFVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-114 1.24e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 67.01  E-value: 1.24e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   1 MNLPLTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQ 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 209981908  81 SNNLK-IAVTMALMLIIILALGLIYEWLQKGLEWE 114
Cdd:MTH00018  79 YNQIApFGFWTMVGFLFILTLGLIYEWIKGGLEWE 113
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 8-114 2.23e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 64.18  E-value: 2.23e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   8 MIDIILVLVLVTVAFWLPQLNMY-----AEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQSN 82
Cdd:MTH00030  13 LLGVGIILLLVSISFTLGNSRIGltkpdSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFN 90

                         90       100       110
                 ....*....|....*....|....*....|...
gi 209981908  83 NLKI-AVTMALMLIIILALGLIYEWLQKGLEWE 114
Cdd:MTH00030  91 QLNLfSFWIVYTFLIVLAIGLAYEWIKGGLEWD 123
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 5.93e-08

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 47.36  E-value: 5.93e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908  33 KNNPYECGFDPMGSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWASQSNNLKI-AVTMALMLIIILALGLIYEWLQK 109
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVfGLVEMALFMLTVFVAYAYVWRRG 114


                 ....*
gi 209981908 110 GLEWE 114
Cdd:PRK07928 115 GLEWD 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-113 9.59e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 46.66  E-value: 9.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   7 LMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWASQSNNLKI 86
Cdd:PRK07756  16 LLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGL 93

                         90       100
                 ....*....|....*....|....*...
gi 209981908  87 -AVTMALMLIIILALGLIYEWLQKGLEW 113
Cdd:PRK07756  94 fALIEMLIFVVMLLVGLAYAWKKKVLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-73 9.14e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 44.11  E-value: 9.14e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 209981908   1 MNLPLTLMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ndhC CHL00022
NADH dehydrogenase subunit 3
 7-113 3.36e-06

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 42.67  E-value: 3.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908   7 LMIDIILVLVLVTVAFWLPQLNMYAEKNNPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWASQSNNLKI 86
Cdd:CHL00022  14 LIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGV 91

                         90       100
                 ....*....|....*....|....*...
gi 209981908  87 AVTMALMLIIILALG-LIYEWLQKGLEW 113
Cdd:CHL00022  92 SAFIEALIFVLILIVgLVYAWRKGALEW 119
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-76 4.74e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.80  E-value: 4.74e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 209981908  36 PYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  40 SFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
11-78 1.35e-03

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 35.80  E-value: 1.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209981908  11 IILVLVLVTVAFW------------LPQLNMYAEKNNPYECGFDPMGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWA 78
Cdd:PRK08489  13 VFVLLVLTFVAFFlttrlarfisrkLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWA 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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