CHD1 helical C-terminal domain containing protein 1 [Homo sapiens]
DUF4208 domain-containing protein( domain architecture ID 10621412)
DUF4208 domain-containing protein similar to C-terminal domain of Homo sapiens chromodomain-helicase-dna-binding Protein 1 (CHD1), an ATP-dependent chromatin remodelling protein that has an ability to assemble and organize nucleosomes both in vitro and in vivo
List of domain hits
Name | Accession | Description | Interval | E-value | |||
DUF4208 | pfam13907 | Domain of unknown function (DUF4208); This domain is found at the C-terminus of ... |
50-132 | 3.43e-17 | |||
Domain of unknown function (DUF4208); This domain is found at the C-terminus of chromodomain-helicase-DNA-binding proteins. The exact function of the domain is undetermined. : Pssm-ID: 464035 Cd Length: 93 Bit Score: 73.83 E-value: 3.43e-17
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Name | Accession | Description | Interval | E-value | |||
DUF4208 | pfam13907 | Domain of unknown function (DUF4208); This domain is found at the C-terminus of ... |
50-132 | 3.43e-17 | |||
Domain of unknown function (DUF4208); This domain is found at the C-terminus of chromodomain-helicase-DNA-binding proteins. The exact function of the domain is undetermined. Pssm-ID: 464035 Cd Length: 93 Bit Score: 73.83 E-value: 3.43e-17
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TRAX | cd14820 | Translin-associated factor-X (TRAX); TRAX (translin-associated factor-X) is a paralog of its ... |
37-88 | 8.75e-03 | |||
Translin-associated factor-X (TRAX); TRAX (translin-associated factor-X) is a paralog of its binding partner protein Translin and together they form oligomeric complexes known as C3PO proteins (for component 3 promoter of RNA-induced silencing complex or RISC). TRAX complexed with Translin is possibly involved in dendritic RNA processing and in DNA double-strand break repair as an interacting partner with C1D, an activator of the DNA-dependent protein kinase involved in the repair of DNA-double strand breaks. It has been shown that Trax subunit, but not Translin, possesses a Glu-Glu-Asp catalytic center with the capacity to digest RNA; this catalytic activity is required for passenger-strand removal and RISC activation in RNAi. In Archaeoglobus fulgidus, Trax-like-subunits assemble into an octameric structure, highly similar to human C3PO; its complex with duplex RNA reveals that the octamer entirely encapsulates a single 13-base-pair RNA duplex inside a large inner cavity. Translin and Trax participate in a variety of nucleic acid metabolism pathways in addition to RNAi and have been implicated in a wide range of biological activities, including mRNA processing, cell growth regulation, spermatogenesis, neuronal development/function, genome stability regulation and carcinogenesis; however, their precise role in some of the processes remains unclear. Pssm-ID: 271350 [Multi-domain] Cd Length: 182 Bit Score: 36.00 E-value: 8.75e-03
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Name | Accession | Description | Interval | E-value | |||
DUF4208 | pfam13907 | Domain of unknown function (DUF4208); This domain is found at the C-terminus of ... |
50-132 | 3.43e-17 | |||
Domain of unknown function (DUF4208); This domain is found at the C-terminus of chromodomain-helicase-DNA-binding proteins. The exact function of the domain is undetermined. Pssm-ID: 464035 Cd Length: 93 Bit Score: 73.83 E-value: 3.43e-17
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TRAX | cd14820 | Translin-associated factor-X (TRAX); TRAX (translin-associated factor-X) is a paralog of its ... |
37-88 | 8.75e-03 | |||
Translin-associated factor-X (TRAX); TRAX (translin-associated factor-X) is a paralog of its binding partner protein Translin and together they form oligomeric complexes known as C3PO proteins (for component 3 promoter of RNA-induced silencing complex or RISC). TRAX complexed with Translin is possibly involved in dendritic RNA processing and in DNA double-strand break repair as an interacting partner with C1D, an activator of the DNA-dependent protein kinase involved in the repair of DNA-double strand breaks. It has been shown that Trax subunit, but not Translin, possesses a Glu-Glu-Asp catalytic center with the capacity to digest RNA; this catalytic activity is required for passenger-strand removal and RISC activation in RNAi. In Archaeoglobus fulgidus, Trax-like-subunits assemble into an octameric structure, highly similar to human C3PO; its complex with duplex RNA reveals that the octamer entirely encapsulates a single 13-base-pair RNA duplex inside a large inner cavity. Translin and Trax participate in a variety of nucleic acid metabolism pathways in addition to RNAi and have been implicated in a wide range of biological activities, including mRNA processing, cell growth regulation, spermatogenesis, neuronal development/function, genome stability regulation and carcinogenesis; however, their precise role in some of the processes remains unclear. Pssm-ID: 271350 [Multi-domain] Cd Length: 182 Bit Score: 36.00 E-value: 8.75e-03
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Blast search parameters | ||||
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