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Conserved domains on  [gi|209572610|sp|Q8WXU2|]
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RecName: Full=Dynein axonemal assembly factor 4; AltName: Full=Dyslexia susceptibility 1 candidate gene 1 protein

Protein Classification

p23_DYX1C1_like and 3a0801s09 domain-containing protein( domain architecture ID 10158101)

protein containing domains p23_DYX1C1_like, PTZ00121, and 3a0801s09

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
p23_DYX1C1_like cd06469
p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) ...
 10-87 3.30e-39

p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.


:

Pssm-ID: 107226  Cd Length: 78  Bit Score: 135.48  E-value: 3.30e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 209572610  10 WQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDESSKAKIGNDTIVFTLYKKEAAMWETLS 87
Cdd:cd06469    1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWEALC 78
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
297-399 3.10e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.79  E-value: 3.10e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 297 GNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNANARmkAHVRRGTAF 376
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAY--AYLNRGIAL 151

                         90       100
                 ....*....|....*....|...
gi 209572610 377 CQLELYVEGLQDYEAALKIDPSN 399
Cdd:COG4785  152 YYLGRYELAIADLEKALELDPND 174
 
Name Accession Description Interval E-value
p23_DYX1C1_like cd06469
p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) ...
 10-87 3.30e-39

p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.


Pssm-ID: 107226  Cd Length: 78  Bit Score: 135.48  E-value: 3.30e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 209572610  10 WQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDESSKAKIGNDTIVFTLYKKEAAMWETLS 87
Cdd:cd06469    1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWEALC 78
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
297-399 3.10e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.79  E-value: 3.10e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 297 GNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNANARmkAHVRRGTAF 376
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAY--AYLNRGIAL 151

                         90       100
                 ....*....|....*....|...
gi 209572610 377 CQLELYVEGLQDYEAALKIDPSN 399
Cdd:COG4785  152 YYLGRYELAIADLEKALELDPND 174
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 276-396 3.77e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.09  E-value: 3.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610  276 DIAELCDLKEEEKN--PEWLKDKGNKLFATENYLAAINAYNLAIRLNNKmPLLYLNRAACHLKLKNLHKAIEDSSKALEL 353
Cdd:TIGR00990 111 DESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALEL 189

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 209572610  354 lmppvtdnANARMKAHVRRGTAFCQLELYVEGLQDYEAALKID 396
Cdd:TIGR00990 190 --------DPDYSKALNRRANAYDGLGKYADALLDLTASCIID 224
CS pfam04969
CS domain; The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans ...
 8-77 1.76e-10

CS domain; The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Two CS domains are found at the N-terminus of Ubiquitin carboxyl-terminal hydrolase 19 (USP19), these domains may play a role in the interaction of USP19 with cellular inhibitor of apoptosis 2.


Pssm-ID: 461503  Cd Length: 76  Bit Score: 56.88  E-value: 1.76e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 209572610    8 YSWQQTKTAVFLSLPLKGVCVRDTDVFC--TENYLKVNFP--PFLFEAFLYAPIDDESSKAKIGNDTIVFTLYK 77
Cdd:pfam04969   3 YDWYQTLDEVTITIPVKGAGIKKKDVKVniKPRSLKVKIKggYELIDGELFHPIDPEESSWTIEGKKVEITLKK 76
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 293-398 1.60e-09

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 59.03  E-value: 1.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 293 LKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNANArmKAHVRR 372
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLA--KAYLRK 76

                         90       100
                 ....*....|....*....|....*.
gi 209572610 373 GTAFCQLELYveglQDYEAALKIDPS 398
Cdd:PLN03088  77 GTACMKLEEY----QTAKAALEKGAS 98
TPR_1 pfam00515
Tetratricopeptide repeat;
367-399 2.65e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 2.65e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 209572610  367 KAHVRRGTAFCQLELYVEGLQDYEAALKIDPSN 399
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
p23_DYX1C1_like cd06469
p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) ...
 10-87 3.30e-39

p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.


Pssm-ID: 107226  Cd Length: 78  Bit Score: 135.48  E-value: 3.30e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 209572610  10 WQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDESSKAKIGNDTIVFTLYKKEAAMWETLS 87
Cdd:cd06469    1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWEALC 78
p23_like cd06463
Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) ...
 10-86 1.01e-15

Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells.


Pssm-ID: 107220  Cd Length: 84  Bit Score: 71.93  E-value: 1.01e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610  10 WQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNF-----PPFLFEAFLYAPIDDESSKAKIGNDTIVFTLYKKEAA-MW 83
Cdd:cd06463    1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVkggggKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGeWW 80


                 ...
gi 209572610  84 ETL 86
Cdd:cd06463   81 PRL 83
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
297-399 3.10e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.79  E-value: 3.10e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 297 GNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNANARmkAHVRRGTAF 376
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAY--AYLNRGIAL 151

                         90       100
                 ....*....|....*....|...
gi 209572610 377 CQLELYVEGLQDYEAALKIDPSN 399
Cdd:COG4785  152 YYLGRYELAIADLEKALELDPND 174
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 276-396 3.77e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.09  E-value: 3.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610  276 DIAELCDLKEEEKN--PEWLKDKGNKLFATENYLAAINAYNLAIRLNNKmPLLYLNRAACHLKLKNLHKAIEDSSKALEL 353
Cdd:TIGR00990 111 DESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALEL 189

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 209572610  354 lmppvtdnANARMKAHVRRGTAFCQLELYVEGLQDYEAALKID 396
Cdd:TIGR00990 190 --------DPDYSKALNRRANAYDGLGKYADALLDLTASCIID 224
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 249-399 3.50e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.01  E-value: 3.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 249 TALRESQVAEEEEWLHKQAEARRAMNTDIAELCDLKEEEK--------------NPEWLKDKGNKLFATENYLAAINAYN 314
Cdd:COG3914   57 AALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEalalyrralalnpdNAEALFNLGNLLLALGRLEEALAALR 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 315 LAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELLmPpvtDNANarmkAHVRRGTAFCQLELYVEGLQDYEAALK 394
Cdd:COG3914  137 RALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD-P---DNAE----ALNNLGNALQDLGRLEEAIAAYRRALE 208


                 ....*
gi 209572610 395 IDPSN 399
Cdd:COG3914  209 LDPDN 213
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
283-399 7.97e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.95  E-value: 7.97e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 283 LKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNA 362
Cdd:COG0457   35 LELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALEL------DPD 108

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 209572610 363 NARmkAHVRRGTAFCQLELYVEGLQDYEAALKIDPSN 399
Cdd:COG0457  109 DAE--ALYNLGLALLELGRYDEAIEAYERALELDPDD 143
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
283-399 1.02e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 1.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 283 LKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNA 362
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------DPD 74

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 209572610 363 NARmkAHVRRGTAFCQLELYVEGLQDYEAALKIDPSN 399
Cdd:COG0457   75 DAE--ALNNLGLALQALGRYEEALEDYDKALELDPDD 109
CS pfam04969
CS domain; The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans ...
 8-77 1.76e-10

CS domain; The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Two CS domains are found at the N-terminus of Ubiquitin carboxyl-terminal hydrolase 19 (USP19), these domains may play a role in the interaction of USP19 with cellular inhibitor of apoptosis 2.


Pssm-ID: 461503  Cd Length: 76  Bit Score: 56.88  E-value: 1.76e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 209572610    8 YSWQQTKTAVFLSLPLKGVCVRDTDVFC--TENYLKVNFP--PFLFEAFLYAPIDDESSKAKIGNDTIVFTLYK 77
Cdd:pfam04969   3 YDWYQTLDEVTITIPVKGAGIKKKDVKVniKPRSLKVKIKggYELIDGELFHPIDPEESSWTIEGKKVEITLKK 76
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 257-399 1.15e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 1.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 257 AEEEEWLHKQAEARRAMNTDIAELCDLKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLK 336
Cdd:COG3914   45 LLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLA 124

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 209572610 337 LKNLHKAIEDSSKALELlmppvtDNANARmkAHVRRGTAFCQLELYVEGLQDYEAALKIDPSN 399
Cdd:COG3914  125 LGRLEEALAALRRALAL------NPDFAE--AYLNLGEALRRLGRLEEAIAALRRALELDPDN 179
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 293-398 1.60e-09

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 59.03  E-value: 1.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 293 LKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNANArmKAHVRR 372
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLA--KAYLRK 76

                         90       100
                 ....*....|....*....|....*.
gi 209572610 373 GTAFCQLELYveglQDYEAALKIDPS 398
Cdd:PLN03088  77 GTACMKLEEY----QTAKAALEKGAS 98
ACD_sHsps_p23-like cd00298
This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small ...
 10-77 2.53e-08

This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR).


Pssm-ID: 107219  Cd Length: 80  Bit Score: 50.67  E-value: 2.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610  10 WQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKV------------NFPPFLFEAFLYAPIDDESSKAKIGNDTIVFTLYK 77
Cdd:cd00298    1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTIsgkreeeeererSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80
p23_CS_SGT1_like cd06466
p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 ...
 10-86 3.94e-08

p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies suggest that the interaction of hSgt1 with Hsp90 and Hsp70 may be regulated by S100A6 in a Ca2+ dependent fashion. This group also includes the p23_like domains of Melusin and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Melusin is a vertebrate protein which interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells.


Pssm-ID: 107223  Cd Length: 84  Bit Score: 50.28  E-value: 3.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610  10 WQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFP-----PFLFEAFLYAPIDDESSKAKIGNDTIVFTLYKKEAAMWE 84
Cdd:cd06466    2 WYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIIlpggsEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSWP 81


                 ..
gi 209572610  85 TL 86
Cdd:cd06466   82 SL 83
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 283-399 1.78e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.00  E-value: 1.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 283 LKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNA 362
Cdd:COG4235   10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL------DPD 83

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 209572610 363 NARmkAHVRRGTAFCQLELYVEGLQDYEAALKIDPSN 399
Cdd:COG4235   84 NPE--ALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
283-394 3.31e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 3.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 283 LKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNA 362
Cdd:COG0457   69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL------DPD 142

                         90       100       110
                 ....*....|....*....|....*....|..
gi 209572610 363 NARmkAHVRRGTAFCQLELYVEGLQDYEAALK 394
Cdd:COG0457  143 DAD--ALYNLGIALEKLGRYEEALELLEKLEA 172
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 283-399 2.42e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 2.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 283 LKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNA 362
Cdd:COG4783   31 LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL------DPE 104

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 209572610 363 NARmkAHVRRGTAFCQLELYVEGLQDYEAALKIDPSN 399
Cdd:COG4783  105 HPE--AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 300-397 3.12e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.80  E-value: 3.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 300 LFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNANARmkAHVRRGTAFCQL 379
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL------SPDNPN--AYSNLAALLLSL 135

                         90
                 ....*....|....*...
gi 209572610 380 ELYVEGLQDYEAALKIDP 397
Cdd:COG5010  136 GQDDEAKAALQRALGTSP 153
p23_hB-ind1_like cd06465
p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. ...
 10-83 5.67e-05

p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.


Pssm-ID: 107222 [Multi-domain]  Cd Length: 108  Bit Score: 42.20  E-value: 5.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610  10 WQQTKTAVFLSLPLKgvCVRDTDVFCTENYLKvnfppflFEAF-------------LYAPIDDESSKAKIGNDTIVFTLY 76
Cdd:cd06465    5 WAQRSDVVYLTIELP--DAKDPKIKLEPTSLS-------FKAKgggggkkyefdleFYKEIDPEESKYKVTGRQIEFVLR 75


                 ....*..
gi 209572610  77 KKEAAMW 83
Cdd:cd06465   76 KKEAGEY 82
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 283-399 8.86e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 8.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 283 LKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvtDNA 362
Cdd:COG2956  103 LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL------DPD 176

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 209572610 363 NARmkAHVRRGTAFCQLELYVEGLQDYEAALKIDPSN 399
Cdd:COG2956  177 CAR--ALLLLAELYLEQGDYEEAIAALERALEQDPDY 211
p23_NUDC_like cd06467
p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) ...
 8-86 4.42e-04

p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. This group also includes the human broadly immunogenic tumor associated antigen, CML66, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of CML66 is limited to testis and heart.


Pssm-ID: 107224  Cd Length: 85  Bit Score: 39.07  E-value: 4.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610   8 YSWQQTKTAVFLSLPLKgVCVRDTDVFC--TENYLKV--NFPPFLFEAFLYAPIDDESSKAKI-GNDTIVFTLYK-KEAA 81
Cdd:cd06467    1 YSWTQTLDEVTVTIPLP-EGTKSKDVKVeiTPKHLKVgvKGGEPLLDGELYAKVKVDESTWTLeDGKLLEITLEKrNEGE 79


                 ....*
gi 209572610  82 MWETL 86
Cdd:cd06467   80 WWPSL 84
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
300-398 5.59e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 5.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 300 LFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEdSSKALELlmppvtDNANARmkAHVRRGTAFCQL 379
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL------DPNNAE--ALLNLAELLLEL 72

                         90
                 ....*....|....*....
gi 209572610 380 ELYVEGLQDYEAALKIDPS 398
Cdd:COG3063   73 GDYDEALAYLERALELDPS 91
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 216-399 6.73e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.89  E-value: 6.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610  216 SENIFTEKL--KEDSIPAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAE-------------- 279
Cdd:TIGR00990 243 AESKAKEILetKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADEsyeeaarafekald 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610  280 LCDLKEEEKNPewLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELlmppvt 359
Cdd:TIGR00990 323 LGKLGEKEAIA--LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL------ 394

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 209572610  360 DNANARMKAHvrRGTAFCQLELYVEGLQDYEAALKIDPSN 399
Cdd:TIGR00990 395 NSEDPDIYYH--RAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
283-410 9.43e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 9.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610 283 LKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELLMPPVTDNA 362
Cdd:COG0457  103 LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 209572610 363 NARMKAHVRRGTAFCQLELYVEGLQDYEAALKIDPSNKIVQIDAEKIR 410
Cdd:COG0457  183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
p23_CacyBP cd06468
p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP) ...
 5-86 1.80e-03

p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes, in mouse endometrial events, and in thymocyte development.


Pssm-ID: 107225  Cd Length: 92  Bit Score: 37.24  E-value: 1.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209572610   5 VSDYSWQQTKTAVFLSLPLKGVcvrdtDVFCTENyLKVNFPPFLFEAF---------------LYAPIDDESSKAKIGND 69
Cdd:cd06468    1 ITKYAWDQSDKFVKIYITLKGV-----HQLPKEN-IQVEFTERSFELKvhdlngknyrftinrLLKKIDPEKSSFKVKTD 74

                         90
                 ....*....|....*..
gi 209572610  70 TIVFTLYKKEAAMWETL 86
Cdd:cd06468   75 RIVITLAKKKEKKWESL 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 283-353 1.91e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 1.91e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 209572610 283 LKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALEL 353
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
TPR_1 pfam00515
Tetratricopeptide repeat;
367-399 2.65e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 2.65e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 209572610  367 KAHVRRGTAFCQLELYVEGLQDYEAALKIDPSN 399
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
297-337 2.80e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.53  E-value: 2.80e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 209572610  297 GNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKL 337
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
TPR_1 pfam00515
Tetratricopeptide repeat;
324-353 9.45e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.55  E-value: 9.45e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 209572610  324 PLLYLNRAACHLKLKNLHKAIEDSSKALEL 353
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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