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Conserved domains on  [gi|2090996046|gb|UAD89881|]
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NADH dehydrogenase subunit 3 [Crassiphycus usneoides]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06602 super family cl00535
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-121 5.81e-46

NADH:ubiquinone oxidoreductase subunit A; Validated


The actual alignment was detected with superfamily member PRK06602:

Pssm-ID: 469809 [Multi-domain]  Cd Length: 121  Bit Score: 144.62  E-value: 5.81e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   1 MKLIFTEYSIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFL 80
Cdd:PRK06602    1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2090996046  81 FPWSLTLGNIPLFGFWSMIIFLLILTIGFIYEWYKGALEWE 121
Cdd:PRK06602   81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-121 5.81e-46

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 144.62  E-value: 5.81e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   1 MKLIFTEYSIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFL 80
Cdd:PRK06602    1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2090996046  81 FPWSLTLGNIPLFGFWSMIIFLLILTIGFIYEWYKGALEWE 121
Cdd:PRK06602   81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-120 1.02e-40

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 131.01  E-value: 1.02e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   4 IFTEYSIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPW 83
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2090996046  84 SLTLGNIPLFGFWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
26-119 6.97e-38

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 122.92  E-value: 6.97e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  26 FSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTLGNIPLFGFWSMIIFLLIL 105
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 2090996046 106 TIGFIYEWYKGALE 119
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-121 5.81e-46

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 144.62  E-value: 5.81e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   1 MKLIFTEYSIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFL 80
Cdd:PRK06602    1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2090996046  81 FPWSLTLGNIPLFGFWSMIIFLLILTIGFIYEWYKGALEWE 121
Cdd:PRK06602   81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-120 1.02e-40

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 131.01  E-value: 1.02e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   4 IFTEYSIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPW 83
Cdd:COG0838     1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2090996046  84 SLTLGNIPLFGFWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 6-121 2.61e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 125.21  E-value: 2.61e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   6 TEYSIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSL 85
Cdd:MTH00055    3 MEFLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCV 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2090996046  86 TLGNIPLFGFWSMIIFLLILTIGFIYEWYKGALEWE 121
Cdd:MTH00055   83 VYNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEWE 118
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
26-119 6.97e-38

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 122.92  E-value: 6.97e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  26 FSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTLGNIPLFGFWSMIIFLLIL 105
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 2090996046 106 TIGFIYEWYKGALE 119
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 11-121 6.22e-36

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 119.01  E-value: 6.22e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  11 ILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTLGNI 90
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2090996046  91 PLFGFWSMIIFLLILTIGFIYEWYKGALEWE 121
Cdd:MTH00018   83 APFGFWTMVGFLFILTLGLIYEWIKGGLEWE 113
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 10-120 8.85e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 105.85  E-value: 8.85e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  10 IILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLF--PWSLTL 87
Cdd:MTH00069    1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2090996046  88 GNIPLFGFWSMIIfLLILTIGFIYEWYKGALEW 120
Cdd:MTH00069   81 NTPTNTLFWSTLI-LILLTLGLIYEWIQGGLEW 112
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 15-120 2.34e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 99.57  E-value: 2.34e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  15 LCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFP--WSLTLgNIPL 92
Cdd:MTH00113    7 LTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINL-TTPT 85

                          90       100
                  ....*....|....*....|....*...
gi 2090996046  93 FGFWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:MTH00113   86 TTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 9-120 2.63e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 99.61  E-value: 2.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   9 SIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFL--FPWSLT 86
Cdd:MTH00136    2 NLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQ 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2090996046  87 LGNIPLFGFWSMIIfLLILTIGFIYEWYKGALEW 120
Cdd:MTH00136   82 LPSPLLTFFWATAV-LILLTLGLIYEWLQGGLEW 114
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
8-120 1.96e-27

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 97.51  E-value: 1.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   8 YSIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTL 87
Cdd:PRK07756    9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2090996046  88 GNIPLFGFWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:PRK07756   89 DKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 3-120 4.06e-27

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 96.59  E-value: 4.06e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   3 LIFTEYSIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFP 82
Cdd:CHL00022    2 FLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP 81

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2090996046  83 WSLTLGNIPLFGFWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:CHL00022   82 WAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEW 119
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 11-120 4.72e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 93.89  E-value: 4.72e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  11 ILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTLGNI 90
Cdd:MTH00042    4 LIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLIT 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2090996046  91 -PLFGFWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:MTH00042   84 nPSTLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 9-121 1.00e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 90.30  E-value: 1.00e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   9 SIILVFLCISVFLSVLIFSLSYFLVPQKA-DQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTL 87
Cdd:MTH00148    2 LSILLSLLFALILSPVLLLLGLVLSKRSYsDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2090996046  88 GNIPLFGFWSM-IIFLLILTIGFIYEWYKGALEWE 121
Cdd:MTH00148   82 GSSFSVWSLTSlFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 12-121 2.21e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 89.99  E-value: 2.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  12 LVFLCISVFLSVLIFSLSYFLV-PQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTLGNI 90
Cdd:MTH00030   13 LLGVGIILLLVSISFTLGNSRIgLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQL 92

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2090996046  91 PLFGFWSMIIFLLILTIGFIYEWYKGALEWE 121
Cdd:MTH00030   93 NLFSFWIVYTFLIVLAIGLAYEWIKGGLEWD 123
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 8-121 9.89e-23

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 85.49  E-value: 9.89e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   8 YSIILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARA--TFDIRFYLVAILFLIFDLEISFLFPWSL 85
Cdd:PRK07928    4 YIPILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGggRFPVKYYLTAMLFIVFDIEIVFLYPWAV 83

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2090996046  86 TLGNIPLFGFWSMIIFLLILTIGFIYEWYKGALEWE 121
Cdd:PRK07928   84 SFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEWD 119
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 10-120 1.37e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 84.83  E-value: 1.37e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  10 IILVFLCISVFLSVLIFSLSYFLVPQ-KADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTLG 88
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKsIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2090996046  89 NIPLFGF-WSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:MTH00161   81 TSNMMSWlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 11-120 2.81e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 81.48  E-value: 2.81e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  11 ILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFL--FPWSLTLG 88
Cdd:MTH00203    4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLlpLPWSNQLS 83

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2090996046  89 NiplFGFWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:MTH00203   84 S---LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 15-120 5.60e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 78.44  E-value: 5.60e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  15 LCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLF--PWSLTLGNIPL 92
Cdd:MTH00106    7 LLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNT 86

                          90       100
                  ....*....|....*....|....*...
gi 2090996046  93 FGFWSmIIFLLILTIGFIYEWYKGALEW 120
Cdd:MTH00106   87 MLTMA-LLLISLLALSLAYEWTQKGLEW 113
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
10-121 7.92e-20

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 78.56  E-value: 7.92e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  10 IILVFLCISVFLSVLIFSL-SYFLVPQKADQEKVSAYECGFNPFDDARaTFDIRFYLVAILFLIFDLEISFLFPWSLTLG 88
Cdd:PRK08489   15 VLLVLTFVAFFLTTRLARFiSRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFK 93

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2090996046  89 NIPLFGFWSMIIFLLILTIGFIYEWYKGALEWE 121
Cdd:PRK08489   94 LLGLFGLIEMLLFIVLLTIGFIYAWKKGALEWQ 126
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 9-120 3.73e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 73.74  E-value: 3.73e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046   9 SIILVFLCISVFLSVLIFSLSYFLVPQK-ADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTL 87
Cdd:MTH00012    2 SLMMIPMMISLILPPLVLGAAWVLAARStADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTIL 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2090996046  88 GNIPLFG-FWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:MTH00012   82 MTSTSKTvVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 11-120 1.75e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 71.95  E-value: 1.75e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  11 ILVFLCISVFLSVLIFSLSYFLVPQK-ADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTLGN 89
Cdd:MTH00202    4 ILFMSILSILISSLLFLVSWMLSFRSlMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKS 83

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2090996046  90 IPLFGFW-SMIIFLLILTIGFIYEWYKGALEW 120
Cdd:MTH00202   84 SWSKGGLlGGTIFLLILIGGLIHEWKEGSLDW 115
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 17-120 2.70e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 40.95  E-value: 2.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  17 ISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFPWSLTLGNIPLFGFW 96
Cdd:PRK06432   39 ISLKTEDILKKAAYEDTPPGSDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFI 118

                          90       100
                  ....*....|....*....|....
gi 2090996046  97 SMIIFLLILTIGFIYEWYKGALEW 120
Cdd:PRK06432  119 ETLIFLAMPLFAVYYAFKMGYMRW 142
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 12-120 2.01e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 37.95  E-value: 2.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  12 LVFLCISVFLSVLIFSLSYFLVP-------QKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLFpwS 84
Cdd:MTH00060    1 MLVLLFVFFVFFLLFLVIYFFHSglwnnkiYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLL--N 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2090996046  85 LTLGNIPLFGFWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:MTH00060   79 MPFQGLLFYNFWYYYFFLLLLFLGFVVELFSGYVRW 114
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 10-120 2.39e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 34.87  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2090996046  10 IILVFLCISVFLSVLIFSLSYFLVPQKADQEKVSAYECGFNPFDDARATFDIRFYLVAILFLIFDLEISFLfpwsLTLGN 89
Cdd:MTH00092    3 VLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMF----LGLLV 78

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2090996046  90 IPLFGFWSMIIFLLILTIGFIYEWYKGALEW 120
Cdd:MTH00092   79 SDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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