|
Name |
Accession |
Description |
Interval |
E-value |
| RNA_pol_B_RPB2 |
cd00653 |
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
1-167 |
3.67e-85 |
|
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 267.13 E-value: 3.67e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 1 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQ-DETQQGQTSRYTRRDHSTSLRHSESGMVDQVLLTT---NADG 76
Cdd:cd00653 537 NVSEEKLKNLDEDGIIRPGARVEPGDILVGKITPKGEtESTPIFGEKARDVRDTSLKYPGGEKGIVDDVKIFSrelNDGG 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 77 LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 156
Cdd:cd00653 617 NKLVKVYIRQKRKPQIGDKFASRHGQKGVISKILPQEDMPFTEDGIPPDIILNPHGFPSRMTIGQLLESLLGKAGALLGK 696
|
170
....*....|.
gi 208609831 157 EGDATPFTDVT 167
Cdd:cd00653 697 FGDATPFDGAE 707
|
|
| RNA_pol_Rpb2_6 |
pfam00562 |
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of ... |
5-164 |
1.07e-74 |
|
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion. This domain is also involved in binding to Rpb1 and Rpb3. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Pssm-ID: 459854 [Multi-domain] Cd Length: 371 Bit Score: 227.80 E-value: 1.07e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 5 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQ---GQTSRyTRRDHSTSLRHSESGMVDQVLL-TTNADGLRFV 80
Cdd:pfam00562 131 EALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRaifGEKAR-DVKDTSLKVPPGEEGVVDDVIVfELPPGGIKMV 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 81 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 160
Cdd:pfam00562 210 KVYIRQKRKPEVGDKFASRHGQKGVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDA 289
|
....
gi 208609831 161 TPFT 164
Cdd:pfam00562 290 TPFD 293
|
|
| PRK08565 |
PRK08565 |
DNA-directed RNA polymerase subunit B; Provisional |
7-163 |
6.62e-74 |
|
DNA-directed RNA polymerase subunit B; Provisional
Pssm-ID: 236291 [Multi-domain] Cd Length: 1103 Bit Score: 239.47 E-value: 6.62e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 7 YDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQ-GQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 85
Cdd:PRK08565 772 YRKLDEDGIVSPEVEVKGGDVLIGKTSPPRFLEELEeLSLGLQERRDTSVTVRHGEKGIVDTVLITESPEGNKLVKVRVR 851
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 208609831 86 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 163
Cdd:PRK08565 852 DLRIPELGDKFASRHGQKGVIGMLVPQEDMPFTEDGIVPDLIINPHAIPSRMTVGQLLESIAGKVAALEGRFVDATPF 929
|
|
| rpoB_arch |
TIGR03670 |
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of ... |
7-164 |
6.27e-73 |
|
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
Pssm-ID: 274713 [Multi-domain] Cd Length: 599 Bit Score: 229.53 E-value: 6.27e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 7 YDKLDDDGLAPPGTRVSGEDVIIGKTTPIG-QDETQQGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 85
Cdd:TIGR03670 268 YKHLDEDGIVYPEVEVKGGDVLIGKTSPPRfLEELREFGLVTERRRDTSVTVRHGEKGIVDKVIITETEEGNKLVKVRVR 347
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 208609831 86 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 164
Cdd:TIGR03670 348 DLRIPELGDKFASRHGQKGVIGMIVPQEDMPFTEDGIVPDLIINPHAIPSRMTVGQLLEMIAGKVAALEGRRVDGTPFE 426
|
|
| RpoB |
COG0085 |
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
6-163 |
3.89e-59 |
|
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 197.64 E-value: 3.89e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 6 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGqdETQQ-----------GQTSRYtRRDHSTSLRHSESGMVDQVLLTTNA 74
Cdd:COG0085 672 ALRNLDEDGIIRIGAEVKGGDILVGKVTPKG--ETELtpeerllraifGEKARE-VRDTSLRVPHGEKGKVIDVKVFSRE 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 75 DG-------LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIM 147
Cdd:COG0085 749 EGdelppgvNKLVRVYVAQKRKIEVGDKLAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQVLETHL 828
|
170
....*....|....*.
gi 208609831 148 GKVAAHMGKEGDATPF 163
Cdd:COG0085 829 GWAAALLGRRVATPVF 844
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| RNA_pol_B_RPB2 |
cd00653 |
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
1-167 |
3.67e-85 |
|
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 267.13 E-value: 3.67e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 1 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQ-DETQQGQTSRYTRRDHSTSLRHSESGMVDQVLLTT---NADG 76
Cdd:cd00653 537 NVSEEKLKNLDEDGIIRPGARVEPGDILVGKITPKGEtESTPIFGEKARDVRDTSLKYPGGEKGIVDDVKIFSrelNDGG 616
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 77 LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 156
Cdd:cd00653 617 NKLVKVYIRQKRKPQIGDKFASRHGQKGVISKILPQEDMPFTEDGIPPDIILNPHGFPSRMTIGQLLESLLGKAGALLGK 696
|
170
....*....|.
gi 208609831 157 EGDATPFTDVT 167
Cdd:cd00653 697 FGDATPFDGAE 707
|
|
| RNA_pol_Rpb2_6 |
pfam00562 |
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of ... |
5-164 |
1.07e-74 |
|
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion. This domain is also involved in binding to Rpb1 and Rpb3. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Pssm-ID: 459854 [Multi-domain] Cd Length: 371 Bit Score: 227.80 E-value: 1.07e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 5 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQ---GQTSRyTRRDHSTSLRHSESGMVDQVLL-TTNADGLRFV 80
Cdd:pfam00562 131 EALKKLDEDGIVRVGAEVKPGDILVGKVGPTELTKLLRaifGEKAR-DVKDTSLKVPPGEEGVVDDVIVfELPPGGIKMV 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 81 KVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDA 160
Cdd:pfam00562 210 KVYIRQKRKPEVGDKFASRHGQKGVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAALLGVFVDA 289
|
....
gi 208609831 161 TPFT 164
Cdd:pfam00562 290 TPFD 293
|
|
| PRK08565 |
PRK08565 |
DNA-directed RNA polymerase subunit B; Provisional |
7-163 |
6.62e-74 |
|
DNA-directed RNA polymerase subunit B; Provisional
Pssm-ID: 236291 [Multi-domain] Cd Length: 1103 Bit Score: 239.47 E-value: 6.62e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 7 YDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQ-GQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 85
Cdd:PRK08565 772 YRKLDEDGIVSPEVEVKGGDVLIGKTSPPRFLEELEeLSLGLQERRDTSVTVRHGEKGIVDTVLITESPEGNKLVKVRVR 851
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 208609831 86 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 163
Cdd:PRK08565 852 DLRIPELGDKFASRHGQKGVIGMLVPQEDMPFTEDGIVPDLIINPHAIPSRMTVGQLLESIAGKVAALEGRFVDATPF 929
|
|
| rpoB_arch |
TIGR03670 |
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of ... |
7-164 |
6.27e-73 |
|
DNA-directed RNA polymerase subunit B; This model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
Pssm-ID: 274713 [Multi-domain] Cd Length: 599 Bit Score: 229.53 E-value: 6.27e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 7 YDKLDDDGLAPPGTRVSGEDVIIGKTTPIG-QDETQQGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMR 85
Cdd:TIGR03670 268 YKHLDEDGIVYPEVEVKGGDVLIGKTSPPRfLEELREFGLVTERRRDTSVTVRHGEKGIVDKVIITETEEGNKLVKVRVR 347
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 208609831 86 SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 164
Cdd:TIGR03670 348 DLRIPELGDKFASRHGQKGVIGMIVPQEDMPFTEDGIVPDLIINPHAIPSRMTVGQLLEMIAGKVAALEGRRVDGTPFE 426
|
|
| PRK07225 |
PRK07225 |
DNA-directed RNA polymerase subunit B'; Validated |
6-164 |
9.52e-68 |
|
DNA-directed RNA polymerase subunit B'; Validated
Pssm-ID: 235972 [Multi-domain] Cd Length: 605 Bit Score: 215.98 E-value: 9.52e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 6 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPI----GQDETQQgqtSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 81
Cdd:PRK07225 273 AYRHLDEDGLVNPETEVKEGDVLIGKTSPPrfleEPDDFGI---SPEKRRETSVTMRSGEEGIVDTVILTETEEGSRLVK 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 82 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDAT 161
Cdd:PRK07225 350 VRVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPFTESGVVPDLIINPHAIPSRMTVGHVLEMIGGKVGSLEGRRVDGT 429
|
...
gi 208609831 162 PFT 164
Cdd:PRK07225 430 AFS 432
|
|
| RpoB |
COG0085 |
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
6-163 |
3.89e-59 |
|
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 197.64 E-value: 3.89e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 6 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGqdETQQ-----------GQTSRYtRRDHSTSLRHSESGMVDQVLLTTNA 74
Cdd:COG0085 672 ALRNLDEDGIIRIGAEVKGGDILVGKVTPKG--ETELtpeerllraifGEKARE-VRDTSLRVPHGEKGKVIDVKVFSRE 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 75 DG-------LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIM 147
Cdd:COG0085 749 EGdelppgvNKLVRVYVAQKRKIEVGDKLAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQVLETHL 828
|
170
....*....|....*.
gi 208609831 148 GKVAAHMGKEGDATPF 163
Cdd:COG0085 829 GWAAALLGRRVATPVF 844
|
|
| rpoB |
TIGR02013 |
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ... |
8-165 |
1.16e-30 |
|
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]
Pssm-ID: 273928 [Multi-domain] Cd Length: 1065 Bit Score: 116.30 E-value: 1.16e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 8 DKLDDDGLAPPGTRVSGEDVIIGKTTPIGqdETQQGQTSRYTR----------RDHSTSLRHSESGMVDQVLLTTNADG- 76
Cdd:TIGR02013 740 RNLDENGIVRIGAEVKAGDILVGKVTPKG--ETELTPEEKLLRaifgekardvRDTSLRVPPGVEGTVIDVKVFSREQGd 817
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 77 ------LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKV 150
Cdd:TIGR02013 818 elppgvNKLVKVYIAQKRKIQVGDKMAGRHGNKGVVSKILPIEDMPFLEDGTPVDIVLNPLGVPSRMNIGQILETHLGWA 897
|
170
....*....|....*..
gi 208609831 151 AAHMGKEGD--ATPFTD 165
Cdd:TIGR02013 898 GKRLGRKGVpiATPVFD 914
|
|
| rpoB |
PRK00405 |
DNA-directed RNA polymerase subunit beta; Reviewed |
9-162 |
2.51e-25 |
|
DNA-directed RNA polymerase subunit beta; Reviewed
Pssm-ID: 234749 [Multi-domain] Cd Length: 1112 Bit Score: 101.33 E-value: 2.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 9 KLDDDGLAPPGTRVSGEDVIIGKTTPIGqdETQQ-----------GQTSRyTRRDhsTSLR--HSESGMV-DQVLLTTNA 74
Cdd:PRK00405 783 NLDESGIVRIGAEVKPGDILVGKVTPKG--ETELtpeekllraifGEKAR-DVKD--TSLRvpHGEEGTViDVKVFTRIE 857
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 75 DG-------LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWtLEGITP-DIIVNPHAIPSRMTIGQLIECI 146
Cdd:PRK00405 858 QGdelppgvNKLVKVYIAQKRKIQVGDKMAGRHGNKGVVSRILPVEDMPY-LEDGTPvDIVLNPLGVPSRMNIGQILETH 936
|
170
....*....|....*.
gi 208609831 147 MGKVAAHMGKEGdATP 162
Cdd:PRK00405 937 LGWAAKGLGIKF-ATP 951
|
|
| rpoB |
CHL00207 |
RNA polymerase beta subunit; Provisional |
9-166 |
1.26e-23 |
|
RNA polymerase beta subunit; Provisional
Pssm-ID: 214397 [Multi-domain] Cd Length: 1077 Bit Score: 96.31 E-value: 1.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 9 KLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQ---------GQTSRYTRrDHSTSLRHSESGMVDQVLLTTNADGLRF 79
Cdd:CHL00207 714 NLDENGIISIGSKVLAGDILVGKITPKGESDQLPegkllraifGEKAKDVK-DTSLRMPNGGYGRVIKVEIFSRSKGDEL 792
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 80 -------VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAA 152
Cdd:CHL00207 793 kfgyylkIRVFIAQIRKIQVGDKLAGRHGNKGIISRILPRQDMPYLPDGTPPDIILNPLGVPSRMNVGQLFECLLGLAGD 872
|
170
....*....|....
gi 208609831 153 HMGKEGDATPFTDV 166
Cdd:CHL00207 873 NLNKRFKILPFDEM 886
|
|
| rpoB |
CHL00001 |
RNA polymerase beta subunit |
2-163 |
1.94e-16 |
|
RNA polymerase beta subunit
Pssm-ID: 214330 [Multi-domain] Cd Length: 1070 Bit Score: 75.71 E-value: 1.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 2 MRHgsydkLDDDGLAPPGTRVSGEDVIIGKTTPigqdetQQGQTSRYT--------------RRDHSTSLRhsesgmvdq 67
Cdd:CHL00001 717 LRN-----LDKNGIVMLGSWVETGDILVGKLTP------QEAEESSYApegrllraifgiqvSTSKETCLK--------- 776
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 68 vlLTTNADGlRFVKVRM-----------RSVRI-------PQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVN 129
Cdd:CHL00001 777 --LPIGGRG-RVIDVRWiqkkggssynpETIHVyilqkreIQVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVLN 853
|
170 180 190
....*....|....*....|....*....|....
gi 208609831 130 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 163
Cdd:CHL00001 854 PLGVPSRMNVGQIFECLLGLAGDLLNRHYRIAPF 887
|
|
| PRK09603 |
PRK09603 |
DNA-directed RNA polymerase subunit beta/beta'; |
77-157 |
4.06e-16 |
|
DNA-directed RNA polymerase subunit beta/beta';
Pssm-ID: 181983 [Multi-domain] Cd Length: 2890 Bit Score: 74.96 E-value: 4.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208609831 77 LRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 156
Cdd:PRK09603 1075 IKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGK 1154
|
.
gi 208609831 157 E 157
Cdd:PRK09603 1155 Q 1155
|
|
| PRK14844 |
PRK14844 |
DNA-directed RNA polymerase subunit beta/beta'; |
91-157 |
2.87e-13 |
|
DNA-directed RNA polymerase subunit beta/beta';
Pssm-ID: 173305 [Multi-domain] Cd Length: 2836 Bit Score: 66.57 E-value: 2.87e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 208609831 91 QIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKE 157
Cdd:PRK14844 1082 QPGDKMAGRHGNKGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILETHVGWACKKLGEK 1148
|
|
|