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Conserved domains on  [gi|2086066443|ref|WP_221887164|]
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DUF5675 family protein, partial [Campylobacter troglodytis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5675 super family cl40928
Family of unknown function (DUF5675); This presumed domain is found in bacteria, archaea, ...
 343-478 5.43e-07

Family of unknown function (DUF5675); This presumed domain is found in bacteria, archaea, alveolata and caudoviruses. Proteins in this family are typically between 133 and 179 amino acids in length.


The actual alignment was detected with superfamily member pfam18925:

Pssm-ID: 465915  Cd Length: 113  Bit Score: 48.78  E-value: 5.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086066443 343 LIERFKETTESTLARMniYIDNQRVkqngeienekgikpiddenfpyAYILE--RNGSDSiggelklRIPEGIYDVSWHI 420
Cdd:pfam18925   1 LLERFYKTDDGTIGRL--YIDGKFI----------------------CYTLEpwRRKRKS-------CIPEGRYKLVLRY 49

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2086066443 421 GKKRKNNIkLYNDFVSPDRYILIHEGYTKENSQnqegasprntyGCLVIAKERVKDKN 478
Cdd:pfam18925  50 SPKFKGWL-LEVENVPGRSGILIHPGNTAKDTE-----------GCILVGTTLGNGDG 95
 
Name Accession Description Interval E-value
DUF5675 pfam18925
Family of unknown function (DUF5675); This presumed domain is found in bacteria, archaea, ...
 343-478 5.43e-07

Family of unknown function (DUF5675); This presumed domain is found in bacteria, archaea, alveolata and caudoviruses. Proteins in this family are typically between 133 and 179 amino acids in length.


Pssm-ID: 465915  Cd Length: 113  Bit Score: 48.78  E-value: 5.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086066443 343 LIERFKETTESTLARMniYIDNQRVkqngeienekgikpiddenfpyAYILE--RNGSDSiggelklRIPEGIYDVSWHI 420
Cdd:pfam18925   1 LLERFYKTDDGTIGRL--YIDGKFI----------------------CYTLEpwRRKRKS-------CIPEGRYKLVLRY 49

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2086066443 421 GKKRKNNIkLYNDFVSPDRYILIHEGYTKENSQnqegasprntyGCLVIAKERVKDKN 478
Cdd:pfam18925  50 SPKFKGWL-LEVENVPGRSGILIHPGNTAKDTE-----------GCILVGTTLGNGDG 95
 
Name Accession Description Interval E-value
DUF5675 pfam18925
Family of unknown function (DUF5675); This presumed domain is found in bacteria, archaea, ...
 343-478 5.43e-07

Family of unknown function (DUF5675); This presumed domain is found in bacteria, archaea, alveolata and caudoviruses. Proteins in this family are typically between 133 and 179 amino acids in length.


Pssm-ID: 465915  Cd Length: 113  Bit Score: 48.78  E-value: 5.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086066443 343 LIERFKETTESTLARMniYIDNQRVkqngeienekgikpiddenfpyAYILE--RNGSDSiggelklRIPEGIYDVSWHI 420
Cdd:pfam18925   1 LLERFYKTDDGTIGRL--YIDGKFI----------------------CYTLEpwRRKRKS-------CIPEGRYKLVLRY 49

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2086066443 421 GKKRKNNIkLYNDFVSPDRYILIHEGYTKENSQnqegasprntyGCLVIAKERVKDKN 478
Cdd:pfam18925  50 SPKFKGWL-LEVENVPGRSGILIHPGNTAKDTE-----------GCILVGTTLGNGDG 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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