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Conserved domains on  [gi|208433774|ref|YP_002265562|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Priasilpha obscura]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-336 8.36e-88

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 267.07  E-value: 8.36e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   1 MLNFYKILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNK 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  81 TEFIPMNSNnsllMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTiFLSSIIIISSII 160
Cdd:MTH00160  82 LMLFNNISS----MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 161 SGIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFF 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 241 MMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQIKINKFMIY--- 317
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLiln 316
                        330
                 ....*....|....*....
gi 208433774 318 FFNSINLFGLLTCTLMFNF 336
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-336 8.36e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 267.07  E-value: 8.36e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   1 MLNFYKILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNK 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  81 TEFIPMNSNnsllMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTiFLSSIIIISSII 160
Cdd:MTH00160  82 LMLFNNISS----MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 161 SGIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFF 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 241 MMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQIKINKFMIY--- 317
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLiln 316
                        330
                 ....*....|....*....
gi 208433774 318 FFNSINLFGLLTCTLMFNF 336
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-282 8.95e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.01  E-value: 8.95e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   23 SYSWLSMWMGLEINLLSLIPLM-SNPKSIYPSESALKYFITQTMASTILLFSIILLMNKT---------EFIPMNSNNSL 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTgtlsfdelsKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   93 LMI----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIIL-TWQKIAPMIIFM-------YNIKMTIFLSSIIIISSII 160
Cdd:pfam00361  81 LLLlfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRrsllylpSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  161 SGIMGINQISLRKILTYSSINHIGWMLASMMMFQSI----WIIYFLIYSFISMNII-----FIFNKLKIFYLNQLFNKMN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 208433774  232 NKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
13-292 7.01e-18

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 84.01  E-value: 7.01e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  13 MILGTMMTISSYSWLSMWMGLEINLLSLIPLMS-NPKSIYPSESALKYFITQTMASTILLFSIILLMNKT---------E 82
Cdd:COG1007  111 ATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATgslnlagiaA 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  83 FIPMNSNNSLLMI-----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMyNIKMTIFLSSIIIIS 157
Cdd:COG1007  191 ALAAGGANSPLLLlglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALL-RLLVEAFPGLAADWQ 269
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMG----------INQISLRKILTYSSINHIGWML-----ASMMMFQSIwIIYFLIYSFisMNI-IFI------- 214
Cdd:COG1007  270 LLLAVLAVlsmtvgnlaaLAQTNVKRMLAYSSIAHAGYLLlglaaGTPLGVSAA-LFYLLAYLF--MNLgAFAvilllsr 346
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 215 --FNKLKIFYLNQLFNKMnnkKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:COG1007  347 kgGEAEEIEDLAGLARRS---PLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
14-292 1.52e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 79.99  E-value: 1.52e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   14 ILGTMMTISSYSWLSMWMGLEINLLSLIPLMS-NPKSIYPSESALKYFITQTMASTILLFSIILL-----------MNKT 81
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfedLLLF 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   82 EFIPMNSNNSLLM---IMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFM---------YNIKMTIF 149
Cdd:TIGR01770 192 LSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilfgFSEAWQIF 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  150 LSSIIIISSIISGIMGINQISLRKILTYSSINHIGWMLASMM----MFQSIWIIYFLIYSFISMNI------IFIFNKLK 219
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLagtlEGIKAVLFYIFIYALMSLGAfgvlslLRSYKDEW 351
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 208433774  220 IFYLNQLFNKMNNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
1-336 8.36e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 267.07  E-value: 8.36e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   1 MLNFYKILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNK 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  81 TEFIPMNSNnsllMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTiFLSSIIIISSII 160
Cdd:MTH00160  82 LMLFNNISS----MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 161 SGIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFF 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 241 MMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQIKINKFMIY--- 317
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLiln 316
                        330
                 ....*....|....*....
gi 208433774 318 FFNSINLFGLLTCTLMFNF 336
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
6-298 1.68e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 197.35  E-value: 1.68e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   6 KILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIIL--LMNKTEF 83
Cdd:MTH00112   6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTnaWNTGQWD 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  84 IPMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIF--MYNIKMTIFLSSIIIISSIIS 161
Cdd:MTH00112  86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLlmTSNSLNPTLLLTLAILSTLIG 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 162 GIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFM 241
Cdd:MTH00112 166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 208433774 242 MNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMI 298
Cdd:MTH00112 246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
7-296 1.64e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 181.58  E-value: 1.64e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   7 ILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSII--LLMNKTEFI 84
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYSGQWTI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  85 PMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIfMYNIKMTIFLSSIIIISSIISGIM 164
Cdd:MTH00105  87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSI-LYQISPSINPNLLLTLAILSILIG 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 165 G---INQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFM 241
Cdd:MTH00105 166 GwggLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 208433774 242 MNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFST 296
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYST 300
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
7-336 2.69e-51

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 173.58  E-value: 2.69e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   7 ILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIIL--LMNKTEFI 84
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIqaWLSGSWSI 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  85 PMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMY--NIKMTIFLSSIIIISSIISG 162
Cdd:MTH00041  87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISisNLLNSNILILCGILSVLVGG 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 163 IMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMM 242
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 243 NFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTL--------NQIKINKF 314
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSIslfswrnsGNITVYGV 326
                        330       340
                 ....*....|....*....|..
gi 208433774 315 MIYFFNSINLFGLLTCTLMFNF 336
Cdd:MTH00041 327 ILSILSSISILGLLLIPLFLSF 348
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
9-307 3.38e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 173.18  E-value: 3.38e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   9 FINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIIL---LMNKTEFIP 85
Cdd:MTH00070   9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawFTGEWTIMN 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  86 MNSNNSLLMIMnSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPM--IIFMYNIKMTIFLSSIIIISSIISGI 163
Cdd:MTH00070  89 MQTPLPTIMLT-IALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMalLIQISHLLNSNLLIIMGLLSTLIGGW 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 164 MGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMN 243
Cdd:MTH00070 168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 208433774 244 FLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFsTMILYSSENTLN 307
Cdd:MTH00070 248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSY-AMSLTTSPNTSN 310
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
8-307 6.47e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 164.59  E-value: 6.47e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   8 LFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMS---NPKSIypsESALKYFITQTMASTILLFSIIL---LMNKT 81
Cdd:MTH00135   8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAqhhHPRAV---EATTKYFLTQATAAAMILFASTTnawLTGQW 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  82 EFIPMNSNNSLLMIMnSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIfMYNIKMT--IFLSSIIIISSI 159
Cdd:MTH00135  85 DIQQMSHPLPTTMIT-LALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFAL-ILQIAPTnpTLLITLGLTSTL 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 160 ISGIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFF 239
Cdd:MTH00135 163 VGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTAL 242
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 208433774 240 FMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFsTMILYSSENTLN 307
Cdd:MTH00135 243 TPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSY-AMTLTISPNTLN 309
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
1-334 3.91e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 159.28  E-value: 3.91e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   1 MLNFYKILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNk 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYN- 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  81 tefipMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAP---MIIFMYNIKMTIFLSSIIIIS 157
Cdd:MTH00144  80 -----LSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPlflLSNFLDLYWLAYLLCVISVLS 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKlIK 237
Cdd:MTH00144 155 ALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYK-TG 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 238 FFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQikiNKFMIY 317
Cdd:MTH00144 234 LSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNS---SKVLNS 310
                        330
                 ....*....|....*..
gi 208433774 318 FFNSINLFGLLTCTLMF 334
Cdd:MTH00144 311 SIISLNLLGGLLFLLLY 327
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
8-301 4.15e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 159.75  E-value: 4.15e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   8 LFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNKTEF--IP 85
Cdd:MTH00200   8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQwgIS 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  86 MNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMII--FMYNIKMTIFLSSIIIISSIISGI 163
Cdd:MTH00200  88 EMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALliQLAPALNSNILLLLGLLSVLVGGW 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 164 MGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMN 243
Cdd:MTH00200 168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLT 247
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 208433774 244 FLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYS 301
Cdd:MTH00200 248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLS 305
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
5-307 2.05e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.94  E-value: 2.05e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   5 YKILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNKTEFI 84
Cdd:MTH00011   7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  85 PmnsnNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAP--MIIFMYNIKMTIFLSSIIIISSIISG 162
Cdd:MTH00011  87 K----NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPlsILFFFTSHNILPMMTSMAAMSALAGG 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 163 IMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMM 242
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 208433774 243 NFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLN 307
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLK 307
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
8-333 1.11e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 152.90  E-value: 1.11e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   8 LFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNKTEFIPMN 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  88 SnnsllMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIFLSSIIIISSIISGIMGIN 167
Cdd:MTH00197  82 V-----VLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 168 QISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMNFLSL 247
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 248 GGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQIKINKFMIYFFNSINLFGL 327
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPL 316

                 ....*.
gi 208433774 328 LTCTLM 333
Cdd:MTH00197 317 LMIFTM 322
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
23-282 8.95e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.01  E-value: 8.95e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   23 SYSWLSMWMGLEINLLSLIPLM-SNPKSIYPSESALKYFITQTMASTILLFSIILLMNKT---------EFIPMNSNNSL 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTgtlsfdelsKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   93 LMI----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIIL-TWQKIAPMIIFM-------YNIKMTIFLSSIIIISSII 160
Cdd:pfam00361  81 LLLlfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRrsllylpSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  161 SGIMGINQISLRKILTYSSINHIGWMLASMMMFQSI----WIIYFLIYSFISMNII-----FIFNKLKIFYLNQLFNKMN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 208433774  232 NKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
14-292 2.71e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.93  E-value: 2.71e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  14 ILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPK-SIYPSESALKYFITQTMASTILLFSIILLMNKTEFIPMNSNNSL 92
Cdd:MTH00199 107 ALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRdSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSI 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  93 L------MIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIFLSSIIIISSIISGIMGI 166
Cdd:MTH00199 187 LtgdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGAL 266
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 167 NQISLRKILTYSSINHIGWMLASMMM--FQSIWI--IYFLIYSFISMNIIFIFNKLKIF--YLNQLFNKMNNKKLIKFFF 240
Cdd:MTH00199 267 NQTKIKRLLAYSGIGHMGFILFGVAIgsFESIQAslIYMIIYVIMSICSFSIILSLKLTkgLIVEVSGLSRKNPVIALTL 346
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 208433774 241 MMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:MTH00199 347 ALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
14-292 1.10e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 85.85  E-value: 1.10e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  14 ILGTMMTISSYSWLSMWMGLEINLLSLIPLM-SNPKSIYPSESALKYFITQTMASTILLFSIILLMNKT-----EFIPMN 87
Cdd:MTH00196   3 ALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTgglhlSYINLV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  88 SNNSLLM----------IMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIFLSSIIIIS 157
Cdd:MTH00196  83 LNSGQSFssvsvpigylLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFS 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMGINQISLRKILTYSSINHIGWMLASMMM--FQSI-----WIIYFLIYSFISMNIIFIFNKLKIFyLNQLFNKM 230
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsFESIqaslvYLFIYIIMSICVFSIILALNVYKNL-IIEFSGLS 241
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 208433774 231 NNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
13-292 4.66e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 84.49  E-value: 4.66e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  13 MILGTMMTISSYSWLSMWMGLEINLLSLIPL-MSNPKSIYPSESALKYFITQTMASTILLFSIILL---MNKTEFIPM-- 86
Cdd:PRK05777 112 ALLGMMVMVSANDLLTLFLGLELLSLPLYALaALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygaTGSLSFAGIak 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  87 ----NSNNSLLMI-----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMyNIKMTIFLSSIIIIS 157
Cdd:PRK05777 192 aladGSGNSLLLLfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLL-RLLVVAFGGLSEDWQ 270
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMG----------INQISLRKILTYSSINHIGWMLA-----SMMMFQSIWIiYFLIYSF--------ISMNIIFI 214
Cdd:PRK05777 271 QVLAIIAIasmlvgnlaaLSQTNIKRLLAYSSIAHAGYLLVglaagTAEGYSAVLF-YLLAYLFmtlgafgvISLLRRKG 349
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 208433774 215 FNKLKIFYLNQLFNKMnnkKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:PRK05777 350 GEAESISDFAGLSKRS---PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
13-292 7.01e-18

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 84.01  E-value: 7.01e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  13 MILGTMMTISSYSWLSMWMGLEINLLSLIPLMS-NPKSIYPSESALKYFITQTMASTILLFSIILLMNKT---------E 82
Cdd:COG1007  111 ATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATgslnlagiaA 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  83 FIPMNSNNSLLMI-----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMyNIKMTIFLSSIIIIS 157
Cdd:COG1007  191 ALAAGGANSPLLLlglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALL-RLLVEAFPGLAADWQ 269
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMG----------INQISLRKILTYSSINHIGWML-----ASMMMFQSIwIIYFLIYSFisMNI-IFI------- 214
Cdd:COG1007  270 LLLAVLAVlsmtvgnlaaLAQTNVKRMLAYSSIAHAGYLLlglaaGTPLGVSAA-LFYLLAYLF--MNLgAFAvilllsr 346
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 215 --FNKLKIFYLNQLFNKMnnkKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:COG1007  347 kgGEAEEIEDLAGLARRS---PLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
15-292 6.29e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.44  E-value: 6.29e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  15 LGTMMTISSYSWLSMWMGLEINLLSLIPLM---SNPKSIY------PSESALKYFITQTMASTILLFSIILLMN------ 79
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAgegSQPGSHFpspgntPPESGLKYWILGAMSSGFYLFGCALYFGftgneg 278
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  80 ----------KTEFIPMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIF 149
Cdd:MTH00198 279 mlgtilsatlETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 150 LSSIIIISSIISGIMGINQISLRKILTYSSINHIGWMLASMMM-----FQSIW--IIYFLIYSFISMNIIFIF------- 215
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAgtyesLQASWtyAVTYLVSALASFTVICTLeefgtrt 438
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 216 -----------NKLKIFYLNQLFNKMNNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLV-------INNFYMISLV 277
Cdd:MTH00198 439 ptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIkiafsssLSIYYLVALF 518
                        330
                 ....*....|....*
gi 208433774 278 LIILTLMTLFFYLRI 292
Cdd:MTH00198 519 AIICTCISAFYYIRI 533
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
14-292 1.52e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 79.99  E-value: 1.52e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   14 ILGTMMTISSYSWLSMWMGLEINLLSLIPLMS-NPKSIYPSESALKYFITQTMASTILLFSIILL-----------MNKT 81
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfedLLLF 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   82 EFIPMNSNNSLLM---IMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFM---------YNIKMTIF 149
Cdd:TIGR01770 192 LSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilfgFSEAWQIF 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  150 LSSIIIISSIISGIMGINQISLRKILTYSSINHIGWMLASMM----MFQSIWIIYFLIYSFISMNI------IFIFNKLK 219
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLagtlEGIKAVLFYIFIYALMSLGAfgvlslLRSYKDEW 351
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 208433774  220 IFYLNQLFNKMNNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
9-292 1.08e-08

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 56.31  E-value: 1.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   9 FINSMILGTMMTISSYSWLSMWMGLEINLLS---LIPLMSNPKSIypsESALKYFITQTMASTILLFSIILL------MN 79
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLAsygLVALGGTKEAL---RAGLKYLILNLVGSALFLLGVGLLygatgtLN 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  80 KTEFIPMNSNNSLLMIMNSAIL------TKMGAAPFHFWFPE-----------VMEGLnwmncliiLTwqKIAPMIIFMy 142
Cdd:COG0651  189 MADLAARLAELDPGLLLAAFALllvgfgIKAALFPLHFWLPDaypaapspvsaLLSGL--------LT--KVGVYAILR- 257
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 143 nIKMTIFLSSIIIISSIISG-----------IMGINQISLRKILTYSSINHIGWMLASMMMFQSI---WIIYFLIYS--- 205
Cdd:COG0651  258 -VLTLLFGADPALFLGTLLLvlglltmlvgaLGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNHala 336
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 206 -----FISMNIIFIFNKLKIFYLNQLFNKMnnkKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLII 280
Cdd:COG0651  337 kallfLAAGAIERATGTRDLDKLGGLGKRM---PLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLL 413
                        330
                 ....*....|..
gi 208433774 281 LTLMTLFFYLRI 292
Cdd:COG0651  414 SSLLTLAYFVRI 425
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
91-328 1.63e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 48.71  E-value: 1.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  91 SLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIFLSSIIIISSIISGIMGINqiS 170
Cdd:MTH00091  58 SFGYFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQMFLLK--S 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 171 LRKILTYSSINHIGWMLASMMMfqsiwiiyfliySFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMNFLSlggL 250
Cdd:MTH00091 136 YKNLLILSSTESFNWLILSFFF------------SFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWETLLVFMN---L 200
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 208433774 251 PPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFylritFSTMILYSSENTLNQIKINKFMIYFFNSINLFGLL 328
Cdd:MTH00091 201 PFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSL-----SFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-292 7.12e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.57  E-value: 7.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  33 LEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNKT----------EFIPMNSNNSLLMIMNSAILT 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTgtlnmadlagALAENPTVVTAFGFVLLALAL 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 103 KMGAAPFHFWFPEVM-----------EGL-----NWMNCLIILTwqkiAPMIIFMYNIKMTIFLSSIIIISSIISGIMGI 166
Cdd:PRK08375 215 KAAVFPLHTWLPRAYpaappvvtallSGLvtkvaVYALIRIYFT----VFGGDFRFALGLGWLLAVLALLSMLVGSLAAL 290
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 167 NQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISM-----------NIIFIFNKLKIFYLNQLFNKMnnkKL 235
Cdd:PRK08375 291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHAlmkgalflaagAIEVTYGTRRLSELSGLGRRM---PL 367
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 208433774 236 IKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:PRK08375 368 TAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
171-294 4.28e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.94  E-value: 4.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 171 LRKILTYSSINHIGWMLASMMMFQSIWI---IYFLIYSFISMNIIF----IFNKL----KIFYLNQLFNkmnNKKLIKFF 239
Cdd:PRK12663 296 IRRIAGYQVISSIGFILLGLALGTPAGIngaIFYLVHDMVVKTALFliagSLVRLtgyrSLQYLGGLYR---KEPLFGAL 372
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 208433774 240 FMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITF 294
Cdd:PRK12663 373 FLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFF 427
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
53-316 8.34e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 44.32  E-value: 8.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  53 SESALKYFITQTMASTILLFSIILLMN------------KTEFIPMNSNNSLLMIMNSAILTKMGAAPFHFW----FPEV 116
Cdd:PRK08376 171 IEAGIKYMFVGSLASSMVLLGIALLYGqygtlnmaylavKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWlpdaYPAA 250
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 117 MEGLNWMNCLI-ILTWQKIAPMIIFMYNIKMTIFLSSIIIISSIISGIMGIN-----QISLRKILTYSSINHIGWML--- 187
Cdd:PRK08376 251 PSSISAMLLVIkQAGLYALARVLFSIYGPAINLATVGWVIIILGCLTMFVGVamavvQKDVKRLLAYHSVSQIGYMLlgl 330
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 188 ---------------ASMMMFQSIWII--YFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMNFLSLGGL 250
Cdd:PRK08376 331 gvglaalgdpamasyGEIALAGGIYHIvnHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGL 410
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 208433774 251 PPFLGFLPKWLTINNLVINNfYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQIKINKFMI 316
Cdd:PRK08376 411 PPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTAFFGPPSEKVMNVKEPPKPML 475
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
168-316 2.71e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 42.65  E-value: 2.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 168 QISLRKILTYSSINHIGWMLASMMMFQSIWI---IYFLIYSFISMNIIFIFNKLKIFY-----LNQLFNKMNNKKLIKFF 239
Cdd:PRK12667 316 QKDVKRLLAYSTISHMGYIFMGIGIGTQLGLaaaLFHIINHAIAKSLLFLASGVFIHAagtrdIDELAGLGRKMPIASFA 395
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 208433774 240 FMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRItFSTMILYSSENTLNQIKINKFMI 316
Cdd:PRK12667 396 FLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRA-WYSLFFGKPKSGEEVEHKESPSM 471
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
9-304 3.35e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.11  E-value: 3.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774   9 FINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLF-SIILLMNKTEFIPMN 87
Cdd:PRK06589 121 FFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpAVILIYTKTGNLDFV 200
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774  88 SNNSL-------LMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLI---------ILTWQKIAPMIIFMYNIK----MT 147
Cdd:PRK06589 201 SGGLFsknqsiiLLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKILLYIFGLSYLQrifaEF 280
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 148 IFLSSIIIISSIISGIMGINQISLRKILTYSSINHIGWMLASMMMFQS----IWIIYFLIYSFISMNIIF----IFNKLK 219
Cdd:PRK06589 281 NWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPkalgAAILHLVSHSFAKICLFYsmgsIYSLKK 360
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 220 IFYLNQLFNKMNNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINN----FYMISLVLIILTLMTLFFYLRITFS 295
Cdd:PRK06589 361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNqpwlSIIVMLVVIASSILSALYLLKILSS 440

                 ....*....
gi 208433774 296 TMILYSSEN 304
Cdd:PRK06589 441 IYKPSLSEN 449
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
172-292 1.06e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 40.70  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 172 RKILTYSSINHIGWMLASMMMFQS---IWIIYFLIYSFISMNIIFIFNKLKIFY-----LNQLFNKMNNKKLIKFFFMMN 243
Cdd:PRK07691 300 KKIIIYNIMIAVGVILVGVAMMTEsgmIGAIYYLIHDMIVKAALFLLIGIMIKItgttdLKKMGGLIKRYPVLGWMFFIA 379
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 208433774 244 FLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:PRK07691 380 ALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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