|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-336 |
8.36e-88 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 267.07 E-value: 8.36e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 1 MLNFYKILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNK 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 81 TEFIPMNSNnsllMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTiFLSSIIIISSII 160
Cdd:MTH00160 82 LMLFNNISS----MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 161 SGIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFF 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 241 MMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQIKINKFMIY--- 317
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLiln 316
|
330
....*....|....*....
gi 208433774 318 FFNSINLFGLLTCTLMFNF 336
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-282 |
8.95e-27 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 107.01 E-value: 8.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 23 SYSWLSMWMGLEINLLSLIPLM-SNPKSIYPSESALKYFITQTMASTILLFSIILLMNKT---------EFIPMNSNNSL 92
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTgtlsfdelsKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 93 LMI----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIIL-TWQKIAPMIIFM-------YNIKMTIFLSSIIIISSII 160
Cdd:pfam00361 81 LLLlfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRrsllylpSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 161 SGIMGINQISLRKILTYSSINHIGWMLASMMMFQSI----WIIYFLIYSFISMNII-----FIFNKLKIFYLNQLFNKMN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 208433774 232 NKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
13-292 |
7.01e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 84.01 E-value: 7.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 13 MILGTMMTISSYSWLSMWMGLEINLLSLIPLMS-NPKSIYPSESALKYFITQTMASTILLFSIILLMNKT---------E 82
Cdd:COG1007 111 ATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATgslnlagiaA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 83 FIPMNSNNSLLMI-----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMyNIKMTIFLSSIIIIS 157
Cdd:COG1007 191 ALAAGGANSPLLLlglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALL-RLLVEAFPGLAADWQ 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMG----------INQISLRKILTYSSINHIGWML-----ASMMMFQSIwIIYFLIYSFisMNI-IFI------- 214
Cdd:COG1007 270 LLLAVLAVlsmtvgnlaaLAQTNVKRMLAYSSIAHAGYLLlglaaGTPLGVSAA-LFYLLAYLF--MNLgAFAvilllsr 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 215 --FNKLKIFYLNQLFNKMnnkKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:COG1007 347 kgGEAEEIEDLAGLARRS---PLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-292 |
1.52e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.99 E-value: 1.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 14 ILGTMMTISSYSWLSMWMGLEINLLSLIPLMS-NPKSIYPSESALKYFITQTMASTILLFSIILL-----------MNKT 81
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfedLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 82 EFIPMNSNNSLLM---IMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFM---------YNIKMTIF 149
Cdd:TIGR01770 192 LSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilfgFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 150 LSSIIIISSIISGIMGINQISLRKILTYSSINHIGWMLASMM----MFQSIWIIYFLIYSFISMNI------IFIFNKLK 219
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLagtlEGIKAVLFYIFIYALMSLGAfgvlslLRSYKDEW 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 208433774 220 IFYLNQLFNKMNNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-336 |
8.36e-88 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 267.07 E-value: 8.36e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 1 MLNFYKILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNK 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 81 TEFIPMNSNnsllMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTiFLSSIIIISSII 160
Cdd:MTH00160 82 LMLFNNISS----MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 161 SGIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFF 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 241 MMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQIKINKFMIY--- 317
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLiln 316
|
330
....*....|....*....
gi 208433774 318 FFNSINLFGLLTCTLMFNF 336
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
6-298 |
1.68e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 197.35 E-value: 1.68e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 6 KILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIIL--LMNKTEF 83
Cdd:MTH00112 6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTnaWNTGQWD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 84 IPMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIF--MYNIKMTIFLSSIIIISSIIS 161
Cdd:MTH00112 86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLlmTSNSLNPTLLLTLAILSTLIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 162 GIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFM 241
Cdd:MTH00112 166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 208433774 242 MNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMI 298
Cdd:MTH00112 246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
7-296 |
1.64e-54 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 181.58 E-value: 1.64e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 7 ILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSII--LLMNKTEFI 84
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYSGQWTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 85 PMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIfMYNIKMTIFLSSIIIISSIISGIM 164
Cdd:MTH00105 87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSI-LYQISPSINPNLLLTLAILSILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 165 G---INQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFM 241
Cdd:MTH00105 166 GwggLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 208433774 242 MNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFST 296
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYST 300
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
7-336 |
2.69e-51 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 173.58 E-value: 2.69e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 7 ILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIIL--LMNKTEFI 84
Cdd:MTH00041 7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIqaWLSGSWSI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 85 PMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMY--NIKMTIFLSSIIIISSIISG 162
Cdd:MTH00041 87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISisNLLNSNILILCGILSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 163 IMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMM 242
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 243 NFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTL--------NQIKINKF 314
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSIslfswrnsGNITVYGV 326
|
330 340
....*....|....*....|..
gi 208433774 315 MIYFFNSINLFGLLTCTLMFNF 336
Cdd:MTH00041 327 ILSILSSISILGLLLIPLFLSF 348
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
9-307 |
3.38e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 173.18 E-value: 3.38e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 9 FINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIIL---LMNKTEFIP 85
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawFTGEWTIMN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 86 MNSNNSLLMIMnSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPM--IIFMYNIKMTIFLSSIIIISSIISGI 163
Cdd:MTH00070 89 MQTPLPTIMLT-IALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMalLIQISHLLNSNLLIIMGLLSTLIGGW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 164 MGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMN 243
Cdd:MTH00070 168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 208433774 244 FLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFsTMILYSSENTLN 307
Cdd:MTH00070 248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSY-AMSLTTSPNTSN 310
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
8-307 |
6.47e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 164.59 E-value: 6.47e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 8 LFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMS---NPKSIypsESALKYFITQTMASTILLFSIIL---LMNKT 81
Cdd:MTH00135 8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAqhhHPRAV---EATTKYFLTQATAAAMILFASTTnawLTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 82 EFIPMNSNNSLLMIMnSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIfMYNIKMT--IFLSSIIIISSI 159
Cdd:MTH00135 85 DIQQMSHPLPTTMIT-LALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFAL-ILQIAPTnpTLLITLGLTSTL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 160 ISGIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFF 239
Cdd:MTH00135 163 VGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTAL 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 208433774 240 FMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFsTMILYSSENTLN 307
Cdd:MTH00135 243 TPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSY-AMTLTISPNTLN 309
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
3.91e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 159.28 E-value: 3.91e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 1 MLNFYKILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNk 80
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYN- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 81 tefipMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAP---MIIFMYNIKMTIFLSSIIIIS 157
Cdd:MTH00144 80 -----LSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPlflLSNFLDLYWLAYLLCVISVLS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKlIK 237
Cdd:MTH00144 155 ALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYK-TG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 238 FFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQikiNKFMIY 317
Cdd:MTH00144 234 LSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNS---SKVLNS 310
|
330
....*....|....*..
gi 208433774 318 FFNSINLFGLLTCTLMF 334
Cdd:MTH00144 311 SIISLNLLGGLLFLLLY 327
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
8-301 |
4.15e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 159.75 E-value: 4.15e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 8 LFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNKTEF--IP 85
Cdd:MTH00200 8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQwgIS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 86 MNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMII--FMYNIKMTIFLSSIIIISSIISGI 163
Cdd:MTH00200 88 EMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALliQLAPALNSNILLLLGLLSVLVGGW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 164 MGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMN 243
Cdd:MTH00200 168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLT 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 208433774 244 FLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYS 301
Cdd:MTH00200 248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLS 305
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
5-307 |
2.05e-44 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 154.94 E-value: 2.05e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 5 YKILFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNKTEFI 84
Cdd:MTH00011 7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 85 PmnsnNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAP--MIIFMYNIKMTIFLSSIIIISSIISG 162
Cdd:MTH00011 87 K----NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPlsILFFFTSHNILPMMTSMAAMSALAGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 163 IMGINQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMM 242
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 208433774 243 NFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLN 307
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLK 307
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-333 |
1.11e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 152.90 E-value: 1.11e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 8 LFINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNKTEFIPMN 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 88 SnnsllMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIFLSSIIIISSIISGIMGIN 167
Cdd:MTH00197 82 V-----VLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 168 QISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMNFLSL 247
Cdd:MTH00197 157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 248 GGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQIKINKFMIYFFNSINLFGL 327
Cdd:MTH00197 237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPL 316
|
....*.
gi 208433774 328 LTCTLM 333
Cdd:MTH00197 317 LMIFTM 322
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-282 |
8.95e-27 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 107.01 E-value: 8.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 23 SYSWLSMWMGLEINLLSLIPLM-SNPKSIYPSESALKYFITQTMASTILLFSIILLMNKT---------EFIPMNSNNSL 92
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTgtlsfdelsKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 93 LMI----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIIL-TWQKIAPMIIFM-------YNIKMTIFLSSIIIISSII 160
Cdd:pfam00361 81 LLLlfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRrsllylpSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 161 SGIMGINQISLRKILTYSSINHIGWMLASMMMFQSI----WIIYFLIYSFISMNII-----FIFNKLKIFYLNQLFNKMN 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 208433774 232 NKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
14-292 |
2.71e-21 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 93.93 E-value: 2.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 14 ILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPK-SIYPSESALKYFITQTMASTILLFSIILLMNKTEFIPMNSNNSL 92
Cdd:MTH00199 107 ALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRdSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSI 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 93 L------MIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIFLSSIIIISSIISGIMGI 166
Cdd:MTH00199 187 LtgdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGAL 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 167 NQISLRKILTYSSINHIGWMLASMMM--FQSIWI--IYFLIYSFISMNIIFIFNKLKIF--YLNQLFNKMNNKKLIKFFF 240
Cdd:MTH00199 267 NQTKIKRLLAYSGIGHMGFILFGVAIgsFESIQAslIYMIIYVIMSICSFSIILSLKLTkgLIVEVSGLSRKNPVIALTL 346
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 208433774 241 MMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:MTH00199 347 ALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
14-292 |
1.10e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 85.85 E-value: 1.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 14 ILGTMMTISSYSWLSMWMGLEINLLSLIPLM-SNPKSIYPSESALKYFITQTMASTILLFSIILLMNKT-----EFIPMN 87
Cdd:MTH00196 3 ALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTgglhlSYINLV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 88 SNNSLLM----------IMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIFLSSIIIIS 157
Cdd:MTH00196 83 LNSGQSFssvsvpigylLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMGINQISLRKILTYSSINHIGWMLASMMM--FQSI-----WIIYFLIYSFISMNIIFIFNKLKIFyLNQLFNKM 230
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsFESIqaslvYLFIYIIMSICVFSIILALNVYKNL-IIEFSGLS 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 208433774 231 NNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
13-292 |
4.66e-18 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 84.49 E-value: 4.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 13 MILGTMMTISSYSWLSMWMGLEINLLSLIPL-MSNPKSIYPSESALKYFITQTMASTILLFSIILL---MNKTEFIPM-- 86
Cdd:PRK05777 112 ALLGMMVMVSANDLLTLFLGLELLSLPLYALaALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygaTGSLSFAGIak 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 87 ----NSNNSLLMI-----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMyNIKMTIFLSSIIIIS 157
Cdd:PRK05777 192 aladGSGNSLLLLfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLL-RLLVVAFGGLSEDWQ 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMG----------INQISLRKILTYSSINHIGWMLA-----SMMMFQSIWIiYFLIYSF--------ISMNIIFI 214
Cdd:PRK05777 271 QVLAIIAIasmlvgnlaaLSQTNIKRLLAYSSIAHAGYLLVglaagTAEGYSAVLF-YLLAYLFmtlgafgvISLLRRKG 349
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 208433774 215 FNKLKIFYLNQLFNKMnnkKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:PRK05777 350 GEAESISDFAGLSKRS---PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
13-292 |
7.01e-18 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 84.01 E-value: 7.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 13 MILGTMMTISSYSWLSMWMGLEINLLSLIPLMS-NPKSIYPSESALKYFITQTMASTILLFSIILLMNKT---------E 82
Cdd:COG1007 111 ATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATgslnlagiaA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 83 FIPMNSNNSLLMI-----MNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMyNIKMTIFLSSIIIIS 157
Cdd:COG1007 191 ALAAGGANSPLLLlglvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALL-RLLVEAFPGLAADWQ 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 158 SIISGIMG----------INQISLRKILTYSSINHIGWML-----ASMMMFQSIwIIYFLIYSFisMNI-IFI------- 214
Cdd:COG1007 270 LLLAVLAVlsmtvgnlaaLAQTNVKRMLAYSSIAHAGYLLlglaaGTPLGVSAA-LFYLLAYLF--MNLgAFAvilllsr 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 215 --FNKLKIFYLNQLFNKMnnkKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:COG1007 347 kgGEAEEIEDLAGLARRS---PLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
15-292 |
6.29e-17 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 81.44 E-value: 6.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 15 LGTMMTISSYSWLSMWMGLEINLLSLIPLM---SNPKSIY------PSESALKYFITQTMASTILLFSIILLMN------ 79
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAgegSQPGSHFpspgntPPESGLKYWILGAMSSGFYLFGCALYFGftgneg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 80 ----------KTEFIPMNSNNSLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIF 149
Cdd:MTH00198 279 mlgtilsatlETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 150 LSSIIIISSIISGIMGINQISLRKILTYSSINHIGWMLASMMM-----FQSIW--IIYFLIYSFISMNIIFIF------- 215
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAgtyesLQASWtyAVTYLVSALASFTVICTLeefgtrt 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 216 -----------NKLKIFYLNQLFNKMNNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLV-------INNFYMISLV 277
Cdd:MTH00198 439 ptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIkiafsssLSIYYLVALF 518
|
330
....*....|....*
gi 208433774 278 LIILTLMTLFFYLRI 292
Cdd:MTH00198 519 AIICTCISAFYYIRI 533
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-292 |
1.52e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.99 E-value: 1.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 14 ILGTMMTISSYSWLSMWMGLEINLLSLIPLMS-NPKSIYPSESALKYFITQTMASTILLFSIILL-----------MNKT 81
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgslnfedLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 82 EFIPMNSNNSLLM---IMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFM---------YNIKMTIF 149
Cdd:TIGR01770 192 LSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilfgFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 150 LSSIIIISSIISGIMGINQISLRKILTYSSINHIGWMLASMM----MFQSIWIIYFLIYSFISMNI------IFIFNKLK 219
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLagtlEGIKAVLFYIFIYALMSLGAfgvlslLRSYKDEW 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 208433774 220 IFYLNQLFNKMNNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
9-292 |
1.08e-08 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 56.31 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 9 FINSMILGTMMTISSYSWLSMWMGLEINLLS---LIPLMSNPKSIypsESALKYFITQTMASTILLFSIILL------MN 79
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLAsygLVALGGTKEAL---RAGLKYLILNLVGSALFLLGVGLLygatgtLN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 80 KTEFIPMNSNNSLLMIMNSAIL------TKMGAAPFHFWFPE-----------VMEGLnwmncliiLTwqKIAPMIIFMy 142
Cdd:COG0651 189 MADLAARLAELDPGLLLAAFALllvgfgIKAALFPLHFWLPDaypaapspvsaLLSGL--------LT--KVGVYAILR- 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 143 nIKMTIFLSSIIIISSIISG-----------IMGINQISLRKILTYSSINHIGWMLASMMMFQSI---WIIYFLIYS--- 205
Cdd:COG0651 258 -VLTLLFGADPALFLGTLLLvlglltmlvgaLGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNHala 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 206 -----FISMNIIFIFNKLKIFYLNQLFNKMnnkKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLII 280
Cdd:COG0651 337 kallfLAAGAIERATGTRDLDKLGGLGKRM---PLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLL 413
|
330
....*....|..
gi 208433774 281 LTLMTLFFYLRI 292
Cdd:COG0651 414 SSLLTLAYFVRI 425
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
91-328 |
1.63e-06 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 48.71 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 91 SLLMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLIILTWQKIAPMIIFMYNIKMTIFLSSIIIISSIISGIMGINqiS 170
Cdd:MTH00091 58 SFGYFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQMFLLK--S 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 171 LRKILTYSSINHIGWMLASMMMfqsiwiiyfliySFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMNFLSlggL 250
Cdd:MTH00091 136 YKNLLILSSTESFNWLILSFFF------------SFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWETLLVFMN---L 200
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 208433774 251 PPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFylritFSTMILYSSENTLNQIKINKFMIYFFNSINLFGLL 328
Cdd:MTH00091 201 PFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSL-----SFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-292 |
7.12e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 47.57 E-value: 7.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 33 LEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLFSIILLMNKT----------EFIPMNSNNSLLMIMNSAILT 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTgtlnmadlagALAENPTVVTAFGFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 103 KMGAAPFHFWFPEVM-----------EGL-----NWMNCLIILTwqkiAPMIIFMYNIKMTIFLSSIIIISSIISGIMGI 166
Cdd:PRK08375 215 KAAVFPLHTWLPRAYpaappvvtallSGLvtkvaVYALIRIYFT----VFGGDFRFALGLGWLLAVLALLSMLVGSLAAL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 167 NQISLRKILTYSSINHIGWMLASMMMFQSIWIIYFLIYSFISM-----------NIIFIFNKLKIFYLNQLFNKMnnkKL 235
Cdd:PRK08375 291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHAlmkgalflaagAIEVTYGTRRLSELSGLGRRM---PL 367
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 208433774 236 IKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:PRK08375 368 TAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
171-294 |
4.28e-05 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 44.94 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 171 LRKILTYSSINHIGWMLASMMMFQSIWI---IYFLIYSFISMNIIF----IFNKL----KIFYLNQLFNkmnNKKLIKFF 239
Cdd:PRK12663 296 IRRIAGYQVISSIGFILLGLALGTPAGIngaIFYLVHDMVVKTALFliagSLVRLtgyrSLQYLGGLYR---KEPLFGAL 372
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 208433774 240 FMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRITF 294
Cdd:PRK12663 373 FLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFF 427
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
53-316 |
8.34e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 44.32 E-value: 8.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 53 SESALKYFITQTMASTILLFSIILLMN------------KTEFIPMNSNNSLLMIMNSAILTKMGAAPFHFW----FPEV 116
Cdd:PRK08376 171 IEAGIKYMFVGSLASSMVLLGIALLYGqygtlnmaylavKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWlpdaYPAA 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 117 MEGLNWMNCLI-ILTWQKIAPMIIFMYNIKMTIFLSSIIIISSIISGIMGIN-----QISLRKILTYSSINHIGWML--- 187
Cdd:PRK08376 251 PSSISAMLLVIkQAGLYALARVLFSIYGPAINLATVGWVIIILGCLTMFVGVamavvQKDVKRLLAYHSVSQIGYMLlgl 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 188 ---------------ASMMMFQSIWII--YFLIYSFISMNIIFIFNKLKIFYLNQLFNKMNNKKLIKFFFMMNFLSLGGL 250
Cdd:PRK08376 331 gvglaalgdpamasyGEIALAGGIYHIvnHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGL 410
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 208433774 251 PPFLGFLPKWLTINNLVINNfYMISLVLIILTLMTLFFYLRITFSTMILYSSENTLNQIKINKFMI 316
Cdd:PRK08376 411 PPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTAFFGPPSEKVMNVKEPPKPML 475
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
168-316 |
2.71e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 42.65 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 168 QISLRKILTYSSINHIGWMLASMMMFQSIWI---IYFLIYSFISMNIIFIFNKLKIFY-----LNQLFNKMNNKKLIKFF 239
Cdd:PRK12667 316 QKDVKRLLAYSTISHMGYIFMGIGIGTQLGLaaaLFHIINHAIAKSLLFLASGVFIHAagtrdIDELAGLGRKMPIASFA 395
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 208433774 240 FMMNFLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRItFSTMILYSSENTLNQIKINKFMI 316
Cdd:PRK12667 396 FLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRA-WYSLFFGKPKSGEEVEHKESPSM 471
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
9-304 |
3.35e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 42.11 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 9 FINSMILGTMMTISSYSWLSMWMGLEINLLSLIPLMSNPKSIYPSESALKYFITQTMASTILLF-SIILLMNKTEFIPMN 87
Cdd:PRK06589 121 FFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpAVILIYTKTGNLDFV 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 88 SNNSL-------LMIMNSAILTKMGAAPFHFWFPEVMEGLNWMNCLI---------ILTWQKIAPMIIFMYNIK----MT 147
Cdd:PRK06589 201 SGGLFsknqsiiLLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKILLYIFGLSYLQrifaEF 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 148 IFLSSIIIISSIISGIMGINQISLRKILTYSSINHIGWMLASMMMFQS----IWIIYFLIYSFISMNIIF----IFNKLK 219
Cdd:PRK06589 281 NWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPkalgAAILHLVSHSFAKICLFYsmgsIYSLKK 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 220 IFYLNQLFNKMNNKKLIKFFFMMNFLSLGGLPPFLGFLPKWLTINNLVINN----FYMISLVLIILTLMTLFFYLRITFS 295
Cdd:PRK06589 361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNqpwlSIIVMLVVIASSILSALYLLKILSS 440
|
....*....
gi 208433774 296 TMILYSSEN 304
Cdd:PRK06589 441 IYKPSLSEN 449
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
172-292 |
1.06e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 40.70 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208433774 172 RKILTYSSINHIGWMLASMMMFQS---IWIIYFLIYSFISMNIIFIFNKLKIFY-----LNQLFNKMNNKKLIKFFFMMN 243
Cdd:PRK07691 300 KKIIIYNIMIAVGVILVGVAMMTEsgmIGAIYYLIHDMIVKAALFLLIGIMIKItgttdLKKMGGLIKRYPVLGWMFFIA 379
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 208433774 244 FLSLGGLPPFLGFLPKWLTINNLVINNFYMISLVLIILTLMTLFFYLRI 292
Cdd:PRK07691 380 ALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
|
|
|