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Conserved domains on  [gi|2082512084|ref|WP_220525982|]
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flagellin A [Campylobacter jejuni]

Protein Classification

PRK08411 family protein( domain architecture ID 11483296)

PRK08411 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08411 PRK08411
flagellin; Reviewed
 1-573 0e+00

flagellin; Reviewed


:

Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 887.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT 160
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 161 IGATQSSKIGLTRFETGGRISTSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALAEEINKSADQTGVRATFTVETRG 240
Cdd:PRK08411  161 IGATQSSKIGVTRFETGARITTSGVVQLTIKNYNGIDDFKFQNVVISTSVGTGLGALAEEINKNADKTGVRATFDVETTG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 241 MAAVRAGTTSDDFAINGVTIGQVAYEDGDGNGALVAAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFIN 320
Cdd:PRK08411  241 VAAIKAGTTSDDFAINGVTIGKVEYKDGDGNGALVAAINSVKDTTGVEASIDENGKLVLTSRDGRGIKIDGDIGGGSGIL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 321 ADMKENYGRLSLVKNDGKDILISGSNLSSAGFGATQFISQASVSLRESKGRFDANIADAMGFGSVNKGVMLAGVSSVSAY 400
Cdd:PRK08411  321 ANMKENYGRLSLVKNDGKDILISGTNLSFAGMGATDMISQASVSLRESKGQIDANVADAMGFNSYKGGVMIQGFSSVSAF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 401 MSSAGSGFSAGSGYSVGSGKNYSAVLtTNAITISAASQLSAVYNVSAGSGFSSQSGLSQFATMKTTAFGVKDETAGVTTL 480
Cdd:PRK08411  401 MSSEGSGFSQGSGYSVGSGKNYSVGL-SSGIQISSASAMSTVYVVSAGSGFSSGSNLSQFAAMKTTAANVKDETAGVTTL 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 481 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 560
Cdd:PRK08411  480 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 559

                         570
                  ....*....|...
gi 2082512084 561 ANSVQQNVLRLLQ 573
Cdd:PRK08411  560 ANAVQQNVLRLLQ 572
 
Name Accession Description Interval E-value
PRK08411 PRK08411
flagellin; Reviewed
 1-573 0e+00

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 887.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT 160
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 161 IGATQSSKIGLTRFETGGRISTSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALAEEINKSADQTGVRATFTVETRG 240
Cdd:PRK08411  161 IGATQSSKIGVTRFETGARITTSGVVQLTIKNYNGIDDFKFQNVVISTSVGTGLGALAEEINKNADKTGVRATFDVETTG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 241 MAAVRAGTTSDDFAINGVTIGQVAYEDGDGNGALVAAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFIN 320
Cdd:PRK08411  241 VAAIKAGTTSDDFAINGVTIGKVEYKDGDGNGALVAAINSVKDTTGVEASIDENGKLVLTSRDGRGIKIDGDIGGGSGIL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 321 ADMKENYGRLSLVKNDGKDILISGSNLSSAGFGATQFISQASVSLRESKGRFDANIADAMGFGSVNKGVMLAGVSSVSAY 400
Cdd:PRK08411  321 ANMKENYGRLSLVKNDGKDILISGTNLSFAGMGATDMISQASVSLRESKGQIDANVADAMGFNSYKGGVMIQGFSSVSAF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 401 MSSAGSGFSAGSGYSVGSGKNYSAVLtTNAITISAASQLSAVYNVSAGSGFSSQSGLSQFATMKTTAFGVKDETAGVTTL 480
Cdd:PRK08411  401 MSSEGSGFSQGSGYSVGSGKNYSVGL-SSGIQISSASAMSTVYVVSAGSGFSSGSNLSQFAAMKTTAANVKDETAGVTTL 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 481 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 560
Cdd:PRK08411  480 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 559

                         570
                  ....*....|...
gi 2082512084 561 ANSVQQNVLRLLQ 573
Cdd:PRK08411  560 ANAVQQNVLRLLQ 572
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-142 1.79e-38

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 137.86  E-value: 1.79e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2082512084  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNF 142
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGIN 138
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
4-156 1.27e-30

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 119.97  E-value: 1.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:COG1344     2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFIN-QEFQIGASSNQT 156
Cdd:COG1344    82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDtPPFQVDYQGDAG 155
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-141 4.22e-13

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 70.07  E-value: 4.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGN 141
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGT 138
 
Name Accession Description Interval E-value
PRK08411 PRK08411
flagellin; Reviewed
 1-573 0e+00

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 887.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT 160
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 161 IGATQSSKIGLTRFETGGRISTSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALAEEINKSADQTGVRATFTVETRG 240
Cdd:PRK08411  161 IGATQSSKIGVTRFETGARITTSGVVQLTIKNYNGIDDFKFQNVVISTSVGTGLGALAEEINKNADKTGVRATFDVETTG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 241 MAAVRAGTTSDDFAINGVTIGQVAYEDGDGNGALVAAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFIN 320
Cdd:PRK08411  241 VAAIKAGTTSDDFAINGVTIGKVEYKDGDGNGALVAAINSVKDTTGVEASIDENGKLVLTSRDGRGIKIDGDIGGGSGIL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 321 ADMKENYGRLSLVKNDGKDILISGSNLSSAGFGATQFISQASVSLRESKGRFDANIADAMGFGSVNKGVMLAGVSSVSAY 400
Cdd:PRK08411  321 ANMKENYGRLSLVKNDGKDILISGTNLSFAGMGATDMISQASVSLRESKGQIDANVADAMGFNSYKGGVMIQGFSSVSAF 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 401 MSSAGSGFSAGSGYSVGSGKNYSAVLtTNAITISAASQLSAVYNVSAGSGFSSQSGLSQFATMKTTAFGVKDETAGVTTL 480
Cdd:PRK08411  401 MSSEGSGFSQGSGYSVGSGKNYSVGL-SSGIQISSASAMSTVYVVSAGSGFSSGSNLSQFAAMKTTAANVKDETAGVTTL 479

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 481 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 560
Cdd:PRK08411  480 KGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQ 559

                         570
                  ....*....|...
gi 2082512084 561 ANSVQQNVLRLLQ 573
Cdd:PRK08411  560 ANAVQQNVLRLLQ 572
PRK13589 PRK13589
flagellin A;
1-573 0e+00

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 886.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK13589    1 MGFRINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT 160
Cdd:PRK13589   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 161 IGATQSSKIGLTRFETGGRISTSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALAEEINKSADQTGVRATFTVETRG 240
Cdd:PRK13589  161 IGATQSSKIGVTRFETGGRSFTSGEVQLTIKNYNGIDDFKFQKVVISTSVGTGLGALAEEINKSADKTGVRATFTVETTG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 241 MAAVRAGTTSDDFAINGVTIGQVAYEDGDGNGALVAAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFIN 320
Cdd:PRK13589  241 VAAIKAGTTSQDFAINGVTIGQVAYKDGDGNGALVSAINSVKDTTGVEASKDANGQLVLTSRDGRGIKIDGNIGGGAGIL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 321 ADMKENYGRLSLVKNDGKDILISGSNLSSAGFGATQFISQASVSLRESKGRFDANIADAMGFGSVNKG---VMLAGVSSV 397
Cdd:PRK13589  321 ANMKENYGRLSLVKNDGKDILISGTNLSAIGMGATDMISQASVSLRESKGRIDANIADAMGFNSYKGGgkfVVTGGFSSV 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 398 SAYMSSAGSGFSAGSGYSVGSGKNYSAVLTTNAITISAASQLSAVYNVSAGSGFSSQSGLSQFATMKTTAFGVKDETAGV 477
Cdd:PRK13589  401 SAFMSSEGSGFSRGSGYSVGSGKNYSVGLSQGIQIISSASAMSTVYNVSAGSGFSSGSGLSQFATMKTTAAGVKDETAGV 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 478 TTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYA 557
Cdd:PRK13589  481 TTLKGAMAVMDIAETAITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYA 560

                         570
                  ....*....|....*.
gi 2082512084 558 MAQANSVQQNVLRLLQ 573
Cdd:PRK13589  561 MSQANAVQQNVLKLLQ 576
PRK13588 PRK13588
flagellin B; Provisional
 1-573 0e+00

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 545.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK13588    1 MSFRINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT 160
Cdd:PRK13588   81 AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKAS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 161 IGATQSSKIGLTRFETG----------GRISTSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALAEEINKSADQTGV 230
Cdd:PRK13588  161 IGATSSDKIGHVRMETSsfsgegmlasAAAQNLTEVGLNFKQVDGVNDYKIETVRISTSAGTGIGALSEIINRFSDTLGV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 231 RATFTVETRGMAAVRAGTTSdDFAINGVTIGQV-AYEDGDGNGALVAAINSVKDTTGVEASIDANGQLLLTSREGRGI-- 307
Cdd:PRK13588  241 RASYNVMATGGTPVQSGTVR-ELTINGVEIGTVnDVHKNDADGRLINAINSVKDRTGVEASLDIQGRINLTSIDGRAIsv 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 308 ---KIDGNIGGGAFINADMKENY---GRLSLVKNDGKDILISGSNLSSAGFGATQFISQASVSLRESKGRFDANIADAMG 381
Cdd:PRK13588  320 haaSASGQVFGGGNFAGISGTQHavvGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAG 399

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 382 FGSVnkgvmlagvssvsaymssagsgfsagsgysvgsgknySAVLTTNAITISaasqlsavynvsagsgfssqsglsqfa 461
Cdd:PRK13588  400 ANAN-------------------------------------GAQAETNSQGIG--------------------------- 415

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 462 tmkttafgvkdetAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAES 541
Cdd:PRK13588  416 -------------AGVTSLKGAMIVMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAEES 482

                         570       580       590
                  ....*....|....*....|....*....|..
gi 2082512084 542 ANYSKANILAQSGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK13588  483 ANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514
PRK12584 PRK12584
flagellin A; Reviewed
 1-573 0e+00

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 526.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK12584    1 MAFQVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT 160
Cdd:PRK12584   81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKAS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 161 IGATQSSKIGLTRFETGGRISTSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALAEEINKSADQTGVRATFTVETRG 240
Cdd:PRK12584  161 IGSTTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSDRTGVKAYASVITTS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 241 MAAVRAGTTSDdFAINGVTIGQVA-YEDGDGNGALVAAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGN------- 312
Cdd:PRK12584  241 DVAVQSGSLSN-LTLNGIHIGNIAdIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLRSIDGRGIEIKTDsvsngps 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 313 ----IGGGAFINADMkENYGRLSLVKNDGKDILISGSN------LSSAGFGATQfISQASVSLRESKGRFDANIADAmgf 382
Cdd:PRK12584  320 altmVNGGQDLTKGS-TNYGRLSLTRLDARDINVVSASdsqhlgFSAIGFGESQ-VAETTVNLRDVTGNFNANVKSA--- 394

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 383 gsvnkgvmlagvssvsaymssagsgfsagsgysvgSGKNYSAVLttnaitisaasqlsavynvsagsgfssqsglsqfat 462
Cdd:PRK12584  395 -----------------------------------SGANYNAVI------------------------------------ 403

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 463 mkttAFGVKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESA 542
Cdd:PRK12584  404 ----ASGNQSLGSGVTTLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESA 479

                         570       580       590
                  ....*....|....*....|....*....|.
gi 2082512084 543 NYSKANILAQSGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK12584  480 NFNKNNILAQSGSYAMSQANTVQQNILRLLT 510
PRK12806 PRK12806
flagellin; Provisional
 5-573 2.20e-49

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 177.96  E-value: 2.20e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK12806    5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKATIGAT 164
Cdd:PRK12806   85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFSIGSI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 165 QSSKIGLTRFETGGRISTSGEVQFTLKN----YNGIDDFQFQKVVISTSVGTGLGALAEEINKSAdQTGVRATFTVETRG 240
Cdd:PRK12806  165 KASSIGGIATATGTEVAGAAATDITIAIgggaATSINSSANFTGALNGQDATSAYAKAAAINDAG-IGGLSVTASTSGTQ 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 241 MAAVRAGTTSD--DFAINGVTI-GQVAYEDGDGNGALVAAINSVKDTTGVEASIDAnGQLLLTSREGRGIKIdgniggga 317
Cdd:PRK12806  244 AVGAIGGTAGDtyNLTINGVAIyTNLDVATALTNSDLRDAINGVSNQTGVVASLNG-GNMTLTAADGRNITV-------- 314

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 318 finadmkenygrlslvkndgkdilisgsnlssagfgatqfisqasvslreskgrfdaniadamgfgsvnkgvmlagvssv 397
Cdd:PRK12806      --------------------------------------------------------------------------------

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 398 saymSSAGSGFSAGS-GYSVGSGKNYSAVLTTNAItisaasqlSAVYNVSAGSGFsSQSGLSqfatMKTTAFGVKDETAG 476
Cdd:PRK12806  315 ----TESGTGFTAGTdGLTVTGGAFDGALRGTLSI--------SAVDTIAIGGTV-ANIGLS----ANISKDTVGIDSLD 377

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 477 VTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSY 556
Cdd:PRK12806  378 VSTASGAQTAIKRIDAALNSVNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTA 457

                         570
                  ....*....|....*..
gi 2082512084 557 AMAQANSVQQNVLRLLQ 573
Cdd:PRK12806  458 MLAQANSLPQSVLSLLG 474
PRK08869 PRK08869
polar flagellin E;
5-573 5.77e-44

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 160.48  E-value: 5.77e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK08869    4 VNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAMNE 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIkatigat 164
Cdd:PRK08869   84 TTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAV------- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 165 qsskigltrfetggristsgevQFTLKNYNgiddfqfqkvvistsvgtglgalaeeinkSADQTGVRATFTVETRGMAAV 244
Cdd:PRK08869  157 ----------------------SLDLKSMR-----------------------------SDAKIMGGVSYDAEGGADKDW 185

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 245 RAGTTSDDFAINGVTIG------QVAYEDGDGNGALVAAINSVKDTTGVEASIDANGQLlltsregrgikidgnigggaf 318
Cdd:PRK08869  186 TVGAGNTDLNVSFDDKGgetqaiTINAKAGDDIEELATYINGQTDGVGASVSEDGKLQL--------------------- 244

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 319 inadmkenygrlslvkndgkdilisgsnlssagfgatqfisqasvslreskgrfdaniadamgfgsvnkgvmLAGVSSVS 398
Cdd:PRK08869  245 ------------------------------------------------------------------------FAAGQKVS 252

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 399 AYMSSAGSgfsagsgysvgsgknysavlTTNAITISAASQlSAVYNVSagsgfssqsglsqfatmkttafgvkdetagVT 478
Cdd:PRK08869  253 GGVSFSGG--------------------LAAELGLGNATA-VTVDDLD------------------------------IS 281

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 479 TLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAM 558
Cdd:PRK08869  282 TVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSIL 361

                         570
                  ....*....|....*
gi 2082512084 559 AQANSVQQNVLRLLQ 573
Cdd:PRK08869  362 AQAKQAPQSALSLLQ 376
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-142 1.79e-38

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 137.86  E-value: 1.79e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2082512084  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNF 142
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGIN 138
PRK08026 PRK08026
FliC/FljB family flagellin;
5-573 4.93e-32

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 129.86  E-value: 4.93e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK08026    5 INTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFiNQEFQIGASSNQTIKATIGAT 164
Cdd:PRK08026   85 INNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDG-SMKIQVGANDGETITIDLKKI 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 165 QSSKIGLTRFETGGRISTSGEVQfTLKNYNGIDDFQFQKVVISTSVGTGLGALAEEINKSADQTGVRATFTvetrgmaav 244
Cdd:PRK08026  164 DSDTLGLDGFNVNGKGTVANTAA-TVSDLTAAGATLDTTGLYDVKTKNAALTTADALAKLGDGDKVTATAT--------- 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 245 rAGTTSDDFAINGVTIGQVAYEDGDGNGALVAAINSVKDTTgVEASIDANGQLLLTSREGRgIKIDGNI---GGGAFINA 321
Cdd:PRK08026  234 -GGDYTYNAKSGKYQAADLAATLTPDVGGTAGASYTIKDGT-YEVNVDSDGKITLGGSALY-IDATGNLttnNAGAATKA 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 322 DMKEnygrlsLVKNDGKDILISGSNLSSAGFGATqfisqasvslreskgrfDANIADAMGFGSVNKgvmlAGVSSVSAYM 401
Cdd:PRK08026  311 TLDA------LKKTASEGAATAKAALAAAGVTVA-----------------DGVTAKTVKMSYTDK----NGKVIDGGYA 363

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 402 SSAGSGFSAGsgySVGSGKNYSAVLTTNAITISAASQLSAVYNVSAGSGFSSQSGLSQFATMKTTAFGVKDETAGVTTlK 481
Cdd:PRK08026  364 VKTGDDYYAA---DYDEITGAISATTTYYTAKDGTTKTAANKLGGADGKTEVVTIDGKTYVASDGKQTTLAEAAATTT-E 439

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 482 GAMAVMDiaeTAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQA 561
Cdd:PRK08026  440 NPLAALD---AAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKA 516

                         570
                  ....*....|..
gi 2082512084 562 NSVQQNVLRLLQ 573
Cdd:PRK08026  517 NQVPQQVLSLLQ 528
PRK12802 PRK12802
flagellin; Provisional
 1-183 7.52e-31

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 121.52  E-value: 7.52e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   1 MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80
Cdd:PRK12802    1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT 160
Cdd:PRK12802   81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMTFQVGANTGQSNQIT 160

                         170       180
                  ....*....|....*....|...
gi 2082512084 161 IGATQSSKIGLTRFETGGRISTS 183
Cdd:PRK12802  161 FGLSASFDATGLGVGSGTLITGA 183
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
4-156 1.27e-30

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 119.97  E-value: 1.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:COG1344     2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFIN-QEFQIGASSNQT 156
Cdd:COG1344    82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDtPPFQVDYQGDAG 155
PRK12804 PRK12804
flagellin; Provisional
 4-227 9.36e-27

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 110.47  E-value: 9.36e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12804    2 RINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  84 EQLKILDTIKTKATQAAQDG-QSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQE---------FQIGASS 153
Cdd:PRK12804   82 ETHSILQRVRELVVQAGNTGtQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAApaagtksltFQIGANA 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2082512084 154 NQTIKATIGATQSSKIGLTrfETGGRIStsgevqfTLKNYNGIDDFQFQKVVISTSVG--TGLGALAEEINKSADQ 227
Cdd:PRK12804  162 AQQLSVNIEAMSADALGVK--DTDGTLV-------TGKSVSDIDVTKFANAAAAADGGfdDQLKIVDGAIKQVSDQ 228
PRK06819 PRK06819
FliC/FljB family flagellin;
5-572 1.41e-26

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 111.41  E-value: 1.41e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK06819    5 INTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNfINQEFQIGASSNQTIKATIGAT 164
Cdd:PRK06819   85 INNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAED-TTMSIQVGANDGETIDINLQKI 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 165 QSSKIGLTRFETGGristsgevqftlknyngiddfqfqkvvistsvgtglgalaeeinKSADQTGVRATFTVETRGMAAV 244
Cdd:PRK06819  164 DSKSLGLGSFSVSG--------------------------------------------VSGALTSLTFTDTALDTSVTGV 199

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 245 RAGTTSDDFAINGVTIGQVAYEDGDGNGALVAAINSVKDTTGveasidangqllltsregrgikidgnigggafinadmk 324
Cdd:PRK06819  200 TTTTALDFSDISTFAKGATVHGIGDVGTDGAYADGYVIRTTD-------------------------------------- 241

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 325 enygrlslvkndgkdilisgsnlssagfgatqfisqasvslreskgrfdaniadamgfgsvnkgvmlagvssvsaymssa 404
Cdd:PRK06819      --------------------------------------------------------------------------------

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 405 gsgfsagsgysvgsGKNYSAVLTTNAITISAASQLSAVYnvsagsgfssqsglsqfATMKTTAFGVKDETAGVTTLKGAM 484
Cdd:PRK06819  242 --------------GKQYKGEVDATNGKVTFADDANGDP-----------------ITDATKLEAAAQFSPAGKATASPL 290

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 485 AVMDiaeTAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSV 564
Cdd:PRK06819  291 ETLD---DALKQVDGLRSSLGAVQNRFESTVTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQV 367


                  ....*...
gi 2082512084 565 QQNVLRLL 572
Cdd:PRK06819  368 PQTVLSLL 375
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 487-572 5.00e-26

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 101.64  E-value: 5.00e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 487 MDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQ 566
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 2082512084 567 NVLRLL 572
Cdd:pfam00700  81 SLLNLL 86
PRK12807 PRK12807
flagellin; Provisional
 4-234 4.49e-21

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 93.73  E-value: 4.49e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12807    2 RINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASsnqtikatiga 163
Cdd:PRK12807   82 SVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSIS----------- 150

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2082512084 164 tqSSKIGLTRFETGgriSTSGEVQFTLKNYNGID-----DFQFQKVVISTSVGTGLGALAEEINKSADQtgvRATF 234
Cdd:PRK12807  151 --GAEISIETLDSS---ATNQQITIKLANTTAEKlgidaTTSNISISGAASALAAISALNTALNTVAGN---RATL 218
PRK12808 PRK12808
flagellin; Provisional
 4-141 5.51e-17

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 83.85  E-value: 5.51e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12808    2 RINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMN 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGN 141
Cdd:PRK12808   82 SVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSN 139
PRK12803 PRK12803
flagellin; Provisional
 5-139 2.59e-16

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 80.24  E-value: 2.59e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   5 INTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84
Cdd:PRK12803    3 INHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNE 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2082512084  85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLS 139
Cdd:PRK12803   83 VEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLS 137
PRK12802 PRK12802
flagellin; Provisional
 427-573 8.08e-16

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 78.00  E-value: 8.08e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 427 TTNAITISAASQLSAVYNVSAGSGFSSQSGLSQFATMKTTAFGV--------KDETAGVTTLKGAMAVMDiaeTAITNLD 498
Cdd:PRK12802  131 TLNGKNLLDGSAGTMTFQVGANTGQSNQITFGLSASFDATGLGVgsgtlitgADSAAAETNAQAAITAID---AALQTIN 207

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2082512084 499 QIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK12802  208 TTRADLGAAQNRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
PRK12804 PRK12804
flagellin; Provisional
 428-573 1.44e-15

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 77.73  E-value: 1.44e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 428 TNAITISAASQLSAVYNVSAGSGfssQSGLSQFATMKTTAFGVKDETAGVTTLKGAMAV-------------------MD 488
Cdd:PRK12804  140 TFKPAAPAAGTKSLTFQIGANAA---QQLSVNIEAMSADALGVKDTDGTLVTGKSVSDIdvtkfanaaaaadggfddqLK 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 489 IAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQNV 568
Cdd:PRK12804  217 IVDGAIKQVSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNV 296


                  ....*
gi 2082512084 569 LRLLQ 573
Cdd:PRK12804  297 LQLLR 301
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
485-573 2.21e-13

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 69.89  E-value: 2.21e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 485 AVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANsv 564
Cdd:COG1344   159 AALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQAN-- 236


                  ....*....
gi 2082512084 565 QQNVLRLLQ 573
Cdd:COG1344   237 QLSLLDLLR 245
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-141 4.22e-13

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 70.07  E-value: 4.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGN 141
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGT 138
PRK12805 PRK12805
FliC/FljB family flagellin;
4-171 9.71e-13

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 69.13  E-value: 9.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12805    2 KVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSgnfinqEFQIGASSNQTIKATIGA 163
Cdd:PRK12805   82 SMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLD------QTATGAATQVSIQASDKA 155


                  ....*...
gi 2082512084 164 TQSSKIGL 171
Cdd:PRK12805  156 NDLINIDL 163
PRK06663 PRK06663
flagellar hook-associated protein 3;
4-292 3.53e-11

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 65.48  E-value: 3.53e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK06663    3 RVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQE-----------FQIGAS 152
Cdd:PRK06663   83 SITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSGTKIDTEpfevirgnikgLQGDAG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 153 SNQTIKATIGATQSSKigLTRFETGGRISTsgevqftlkNYNGIDDFQFQKVVISTSVGTGlgalaeeinksadqtgvra 232
Cdd:PRK06663  163 SNQIIGVEYNGDIGEQ--NREIENGIYIPV---------NYPGNKVFWGTNQSIISSVDAS------------------- 212

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2082512084 233 TFTVetrgmaavragTTSDDFAINGVTIGQVAyedGDGNGALVAAINsvkDTTG-VEASID 292
Cdd:PRK06663  213 GYVV-----------KEDQKIYIDGVEIHLSA---GDTIDDIIAKIN---DSSApVKASLD 256
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
4-141 6.73e-11

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 64.98  E-value: 6.73e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK14692    2 RITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQ 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANtTSFNGKQLLSGN 141
Cdd:PRK14692   82 DMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLAN-TSVNGQYLFAGS 138
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 22-140 1.24e-09

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 60.99  E-value: 1.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  22 SKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQ 101
Cdd:PRK08412   20 QNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSKTMEAFKTKLIQAAN 99

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2082512084 102 DGQSLKTRTMLQADINRLMEELDNIANtTSFNGKQLLSG 140
Cdd:PRK08412  100 DVHSETSREAIANDLEALKEHMINLAN-TSIGGEFLFSG 137
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 31-270 2.64e-08

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 56.07  E-value: 2.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  31 RLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQDGQSLKTRT 110
Cdd:PRK08870   29 QLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARELVVQAGNGSLSDSDRQ 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 111 MLQADINRLMEELDNIANTTSFNGKQLLSGNFI-NQEFQIGASSNQT-------IKATIGATQSSKIGLTRFETGGRIST 182
Cdd:PRK08870  109 AIATELQGLRDQLLNLANSKDGSGNYLFAGTQSgTQPFAFDASGNVVysgdqgqRQVQVADSVQVATNDPGDEVFMSVPN 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 183 SGevqftlknyngiddfqFQKVVISTSVGTGLGALAEEINKSADQTGVRATFTVETRGMAAVRAGTTSDDfAINGVTIGQ 262
Cdd:PRK08870  189 GG----------------GDYVPNANASNTGTGLLGSASITDPSDPVNGDTYTITFTDNGAGGTNTYVTD-SSTGTVVTA 251


                  ....*...
gi 2082512084 263 VAYEDGDG 270
Cdd:PRK08870  252 QAYDAGQP 259
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 4-140 1.02e-06

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 50.76  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK07701    2 RVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALD 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTsFNGKQLLSG 140
Cdd:PRK07701   82 QATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQ-YNGRYIFNG 137
PRK12807 PRK12807
flagellin; Provisional
 473-573 2.89e-06

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 49.44  E-value: 2.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 473 ETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQ 552
Cdd:PRK12807  187 SNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNE 266

                          90       100
                  ....*....|....*....|.
gi 2082512084 553 SGSYAMAQANSVQQNVLRLLQ 573
Cdd:PRK12807  267 AGISMLSQANQTPQMVSKLLQ 287
PRK12803 PRK12803
flagellin; Provisional
 406-573 4.40e-06

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 49.04  E-value: 4.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 406 SGFSAGSGYSVGSGKNYSAVLTTNAITISAASQLS---AVYNVSAGSGFSSQSGLSQFATMKTTAFGVKDETAGVTTLKG 482
Cdd:PRK12803  165 SGSQASWTLRVHVGANQDEAIAVNIYAANVANLFSgegAQQAAPVQEGAQQEGAQAAPAPAAAPAQGGVNSPVNVTTTVD 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 483 AMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQAN 562
Cdd:PRK12803  245 ANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQAN 324

                         170
                  ....*....|.
gi 2082512084 563 SVQQNVLRLLQ 573
Cdd:PRK12803  325 QVPQYVLSLLR 335
Flagellin_IN pfam07196
Flagellin hook IN motif; The function of this region is not clear, but it is found in many ...
 252-301 4.01e-05

Flagellin hook IN motif; The function of this region is not clear, but it is found in many flagellar hook proteins, including FliD homologs. It is normally repeated, but is also apparently seen as a singleton. A conserved IN is seen at the centre of the motif. The diversity of these motifs makes it likely that some members of the family are not identified.


Pssm-ID: 399878 [Multi-domain]  Cd Length: 55  Bit Score: 41.44  E-value: 4.01e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2082512084 252 DFAINGVTIG--QVAYEDGDGNGALVAAINSVKDTTGVEASIDAN-GQLLLTS 301
Cdd:pfam07196   1 TLTINGVGGGgtDISVSAGDSLGDLADAINAVSSKTGVSASIDTDtGRLVLTS 53
PRK14708 PRK14708
flagellin; Provisional
 12-316 7.18e-05

flagellin; Provisional


Pssm-ID: 173171 [Multi-domain]  Cd Length: 888  Bit Score: 45.67  E-value: 7.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  12 LNAKANADLnsksLDASLSRLSSGLRINSAADDASGMAIADSLRSQA---NTLGQAISNGndaLGILQTADKAMDEQLKI 88
Cdd:PRK14708   15 SSLQATADL----LATTQSRLSSGKKVNTALDNPTNFFTAASLDSRAsdiNNLLDGIGNG---VQILQAANTGITSLNKL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  89 LDTIKTKATQAAQDGQSLKTRTMLQADINRLMEelDNIANTTSFNGKQllsgnfinqefqigASSNQTIKATIGATqsSK 168
Cdd:PRK14708   88 VDSAKSIANQALQTNVGYATKSNVSATIAGATA--DDLRGTQSFSNAV--------------ATSNVIFDGTAGGT--ST 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 169 IGLTRFETGGRISTSGEVQFTLknyNGIDDFQFQKVVISTSVGTGLGALAEEInkSADQTGVRATFTVETRGMAAVRAGT 248
Cdd:PRK14708  150 ASGTDTLGGGIVSIAAGTAVTV---LGAADATALGSVLSVGTAAATATGADLI--SSLTNGSTATATGPAAGDSITVNGK 224

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2082512084 249 TsddfaINGVTIGqVAYEDGDGN---------GALVAAINSVKDTTGVEASIDAnGQLLLTSREGRGIKIDGNIGGG 316
Cdd:PRK14708  225 T-----ITFTTAG-AATADSNGNytigldqtlTALLATIDTINGNTTNPSVVTA-GKLELHSGTNSPLTISDNAGGA 294
PRK12688 PRK12688
flagellin; Reviewed
 12-355 2.75e-04

flagellin; Reviewed


Pssm-ID: 171664 [Multi-domain]  Cd Length: 751  Bit Score: 43.71  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  12 LNAKANADLnsksLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDT 91
Cdd:PRK12688   15 LSLQSTADL----LATTQSRLSTGKKVNSALDNPTNFFTAQSLDNRASDINNLLDGIGNGVQILQAANTGITSLQKLIDS 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084  92 IKTKATQAAQDGQSLKTRTMLQADINRLMEelDNIANTTSFNGKQLLSGnfINQEFQIGASSNQTIKATIGATQSSKIGL 171
Cdd:PRK12688   91 AKSIANQALQTVVGYSTKSNVSTTISGATA--DDLRGTTSYASATASSN--VLYDGAAGGATAATGATTLGGTAGSLAGT 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 172 TRFETGGRISTSGEVqftlknyngiddfqfqkVVISTSVGTGLGALAEEINKSADQTGVRA-TFTVETRGMAAVRAGTTS 250
Cdd:PRK12688  167 GATAGDGTTALTGTI-----------------TLIATNGTTATGLLGNAQPADGDTLTVNGkTITFRSGAAPASTAVPSG 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 251 DDFAINGVTigqvayeDGDGNGALVAAINSVKDttgVEASIDANGQLLLTSREGRGIKIDGNIGGGafinADMKENYGRL 330
Cdd:PRK12688  230 SGVSGNLVT-------DGNGNSTVYLGSATVND---LLSAIDLASGVQTVTISSGAATIAVSASGG----AVSAAAAGAV 295

                         330       340
                  ....*....|....*....|....*
gi 2082512084 331 SLVKNDGKDILISGSNLSSAGFGAT 355
Cdd:PRK12688  296 TLKSSTGADLSVTGKADLLKALGLT 320
flgL PRK12717
flagellar hook-associated protein 3;
4-141 5.51e-04

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 42.81  E-value: 5.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   4 RINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83
Cdd:PRK12717    2 RISTSQFYESSAANYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLT 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2082512084  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGN 141
Cdd:PRK12717   82 SINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQYLFAGS 139
PRK12687 PRK12687
flagellin; Reviewed
 7-139 5.81e-04

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 42.34  E-value: 5.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084   7 TNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQantlGQAISNGNDALGILQTADKAMDEQL 86
Cdd:PRK12687    6 TNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSD----NEALSAVSDALGLGAATVDTMYTAL 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2082512084  87 KI--------LDTIKTKATQAAQDGQSlktRTMLQADINRLMEELDNIANTTSFNGKQLLS 139
Cdd:PRK12687   82 TSvvgdsksgLTALKAKLVAAREPGID---RTKIQSEITAIQNDLKNTAGLAVFNGENWLS 139
PRK12805 PRK12805
FliC/FljB family flagellin;
416-572 1.94e-03

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 40.62  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 416 VGSGKNYSAVLTTNAITISAASQLSAVYNVSAGSGFSSQSGLSQFATMKTTAFGVKDETAGVTTLKGAMA-----VMDIA 490
Cdd:PRK12805  124 VADTTNYNNIKLLDQTATGAATQVSIQASDKANDLINIDLFNAKGLSAGTITLGSGSTVAGYSALSVADAdssqeATEAI 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082512084 491 ETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQNVLR 570
Cdd:PRK12805  204 DELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQ 283


                  ..
gi 2082512084 571 LL 572
Cdd:PRK12805  284 LI 285
Flagellin_IN pfam07196
Flagellin hook IN motif; The function of this region is not clear, but it is found in many ...
 188-238 3.68e-03

Flagellin hook IN motif; The function of this region is not clear, but it is found in many flagellar hook proteins, including FliD homologs. It is normally repeated, but is also apparently seen as a singleton. A conserved IN is seen at the centre of the motif. The diversity of these motifs makes it likely that some members of the family are not identified.


Pssm-ID: 399878 [Multi-domain]  Cd Length: 55  Bit Score: 35.66  E-value: 3.68e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2082512084 188 FTLKNYNGIDDfqfqkvVISTSVGTGLGALAEEINKSADQTGVRATFTVET 238
Cdd:pfam07196   2 LTINGVGGGGT------DISVSAGDSLGDLADAINAVSSKTGVSASIDTDT 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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