NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2082505292|ref|XP_042966358|]
View 

putative disease resistance RPP13-like protein 1 [Carya illinoinensis]

Protein Classification

NB-LRR family disease resistance protein( domain architecture ID 16059279)

NB-LRR (nucleotide-binding-leucine rich repeat) family disease resistance protein guards the plant against pathogens via an indirect interaction with an avirulence protein contained in the plant, triggering a defense response that restricts the pathogen growth

CATH:  3.80.10.10
Gene Ontology:  GO:0006952|GO:0005515|GO:0000166
PubMed:  20483655|25825425|9545207|21459033|11751054|7583641|14747988
SCOP:  4003523

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NB-ARC super family cl26397
NB-ARC domain;
207-432 2.49e-32

NB-ARC domain;


The actual alignment was detected with superfamily member pfam00931:

Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 126.73  E-value: 2.49e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  207 VIPIFGMAGIGKTTLAKFVYNNQD-VQRSFNPKVWVCVSaydGDFDVATITRAILHSMTPEINYYSSMDLNQLQVELKKL 285
Cdd:pfam00931   20 IVGIHGMGGVGKTTLAAQIFNDFDeVEGHFDSVAWVVVS---KTFTISTLQQTILQNLGLSEDDWDNKEEGELARKIRRA 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  286 LNEKRFLIVLDDVRNENyrKWTSLCAPFDAGASGSSIIVTTRHQDVMSLMSTVGVPPacRLGLLPDKDCMSILAKHALDT 365
Cdd:pfam00931   97 LLTKRFLLVLDDVWDEE--DWDKIGIPLPDRENGCRVLLTTRSEEVAGRVGGPSDPH--EVELLEPDEAWELFENKVFPK 172

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2082505292  366 RDfSAHRHLKYDAEEIVRKCEGLPLAVETVGSLLRVNNDY--WKIVSNSKMWDILNEKKE---IVPALMLSY 432
Cdd:pfam00931  173 TL-GECELLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTVeeWKHVYDVLQSELKSNSYSlnsVRSILQLSY 243
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
594-787 4.30e-16

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 82.29  E-value: 4.30e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  594 ITRLRYLRVFCLRGYRITELSYSIGNLKHLRHLDLSETLIRSMPESITTLYNLQTLLLENCfHLNKLPSTFGNLVNLRHL 673
Cdd:COG4886    132 LANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNN-QITDLPEPLGNLTNLEEL 210

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  674 NIQGAiQLEGMPTQIGKLTCLRSL--SNmvvgkdNTCSGIKELGSLPHLrETLCIS--RLENVtrPKEAEDATLS----N 745
Cdd:COG4886    211 DLSGN-QLTDLPEPLANLTNLETLdlSN------NQLTDLPELGNLTNL-EELDLSnnQLTDL--PPLANLTNLKtldlS 280

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 2082505292  746 KSEITRLSLEWSEDIDESKDRASELEVLENLEPHESLKELTI 787
Cdd:COG4886    281 NNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322
Rx_N pfam18052
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ...
 8-90 4.96e-15

Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.


:

Pssm-ID: 436239  Cd Length: 93  Bit Score: 71.92  E-value: 4.96e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292    8 FLAASIQVLLERLSSPQFLNFVYRRRLQRRLDELSTIEMLLEDANEKQHTERDVKAWLDDLKDLFYDVEDILDELGTKAL 87
Cdd:pfam18052    1 AVSSLLEKLGSLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQVKLWLKQLRDVAYDAEDVLDEFLYEAL 80


                   ...
gi 2082505292   88 QHK 90
Cdd:pfam18052   81 RRK 83
PLN03210 super family cl33662
Resistant to P. syringae 6; Provisional
 1170-1366 9.90e-10

Resistant to P. syringae 6; Provisional


The actual alignment was detected with superfamily member PLN03210:

Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 63.36  E-value: 9.90e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1170 LEYLPRDVHTLSTLREIDI------TDCPSLSfslgeewLPANLRALHVSDCKKMLALPKGIH----------------- 1226
Cdd:PLN03210   623 LEKLWDGVHSLTGLRNIDLrgsknlKEIPDLS-------MATNLETLKLSDCSSLVELPSSIQylnkledldmsrcenle 695

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1227 ------NHTSLQSLTLHHCPDDVSFPE---------------EGFPTNLKLLSISHLKIIDALLE--WG-LNKLTSLNKL 1282
Cdd:PLN03210   696 ilptgiNLKSLYRLNLSGCSRLKSFPDistniswldldetaiEEFPSNLRLENLDELILCEMKSEklWErVQPLTPLMTM 775

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1283 eisgcphlvsfsdqmkLPKSLSSLTISHFTNLRSLSSEgLQNLTSLNELIIFECGKLTSFQKNGLPPSLSKLYISRCERL 1362
Cdd:PLN03210   776 ----------------LSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838


                   ....
gi 2082505292 1363 LSFP 1366
Cdd:PLN03210   839 RTFP 842
 
Name Accession Description Interval E-value
NB-ARC pfam00931
NB-ARC domain;
207-432 2.49e-32

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 126.73  E-value: 2.49e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  207 VIPIFGMAGIGKTTLAKFVYNNQD-VQRSFNPKVWVCVSaydGDFDVATITRAILHSMTPEINYYSSMDLNQLQVELKKL 285
Cdd:pfam00931   20 IVGIHGMGGVGKTTLAAQIFNDFDeVEGHFDSVAWVVVS---KTFTISTLQQTILQNLGLSEDDWDNKEEGELARKIRRA 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  286 LNEKRFLIVLDDVRNENyrKWTSLCAPFDAGASGSSIIVTTRHQDVMSLMSTVGVPPacRLGLLPDKDCMSILAKHALDT 365
Cdd:pfam00931   97 LLTKRFLLVLDDVWDEE--DWDKIGIPLPDRENGCRVLLTTRSEEVAGRVGGPSDPH--EVELLEPDEAWELFENKVFPK 172

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2082505292  366 RDfSAHRHLKYDAEEIVRKCEGLPLAVETVGSLLRVNNDY--WKIVSNSKMWDILNEKKE---IVPALMLSY 432
Cdd:pfam00931  173 TL-GECELLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTVeeWKHVYDVLQSELKSNSYSlnsVRSILQLSY 243
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
594-787 4.30e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 82.29  E-value: 4.30e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  594 ITRLRYLRVFCLRGYRITELSYSIGNLKHLRHLDLSETLIRSMPESITTLYNLQTLLLENCfHLNKLPSTFGNLVNLRHL 673
Cdd:COG4886    132 LANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNN-QITDLPEPLGNLTNLEEL 210

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  674 NIQGAiQLEGMPTQIGKLTCLRSL--SNmvvgkdNTCSGIKELGSLPHLrETLCIS--RLENVtrPKEAEDATLS----N 745
Cdd:COG4886    211 DLSGN-QLTDLPEPLANLTNLETLdlSN------NQLTDLPELGNLTNL-EELDLSnnQLTDL--PPLANLTNLKtldlS 280

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 2082505292  746 KSEITRLSLEWSEDIDESKDRASELEVLENLEPHESLKELTI 787
Cdd:COG4886    281 NNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322
Rx_N pfam18052
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ...
 8-90 4.96e-15

Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.


Pssm-ID: 436239  Cd Length: 93  Bit Score: 71.92  E-value: 4.96e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292    8 FLAASIQVLLERLSSPQFLNFVYRRRLQRRLDELSTIEMLLEDANEKQHTERDVKAWLDDLKDLFYDVEDILDELGTKAL 87
Cdd:pfam18052    1 AVSSLLEKLGSLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQVKLWLKQLRDVAYDAEDVLDEFLYEAL 80


                   ...
gi 2082505292   88 QHK 90
Cdd:pfam18052   81 RRK 83
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 1170-1366 9.90e-10

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 63.36  E-value: 9.90e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1170 LEYLPRDVHTLSTLREIDI------TDCPSLSfslgeewLPANLRALHVSDCKKMLALPKGIH----------------- 1226
Cdd:PLN03210   623 LEKLWDGVHSLTGLRNIDLrgsknlKEIPDLS-------MATNLETLKLSDCSSLVELPSSIQylnkledldmsrcenle 695

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1227 ------NHTSLQSLTLHHCPDDVSFPE---------------EGFPTNLKLLSISHLKIIDALLE--WG-LNKLTSLNKL 1282
Cdd:PLN03210   696 ilptgiNLKSLYRLNLSGCSRLKSFPDistniswldldetaiEEFPSNLRLENLDELILCEMKSEklWErVQPLTPLMTM 775

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1283 eisgcphlvsfsdqmkLPKSLSSLTISHFTNLRSLSSEgLQNLTSLNELIIFECGKLTSFQKNGLPPSLSKLYISRCERL 1362
Cdd:PLN03210   776 ----------------LSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838


                   ....
gi 2082505292 1363 LSFP 1366
Cdd:PLN03210   839 RTFP 842
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 190-821 7.32e-07

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 54.11  E-value: 7.32e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  190 LLRMHSEtrsdaafKVNVIPIFGMAGIGKTTLAKFVYNNqdVQRSFNPKVWV-------CVSAYDG-DFDVATITRAILH 261
Cdd:PLN03210   199 LLHLESE-------EVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIdrafiskSMEIYSSaNPDDYNMKLHLQR 269

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  262 SMTPEINYYSSMDLNQLQVeLKKLLNEKRFLIVLDDVRNENYrkWTSLCAPFDAGASGSSIIVTTRHQDVMSLMSTVGVP 341
Cdd:PLN03210   270 AFLSEILDKKDIKIYHLGA-MEERLKHRKVLIFIDDLDDQDV--LDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIY 346

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  342 PACrlglLPDKD-CMSILAKHALdtRDFSAHRHLKYDAEEIVRKCEGLPLAVETVGSLLR-VNNDYWkIVSNSKMWDILN 419
Cdd:PLN03210   347 EVC----LPSNElALEMFCRSAF--KKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRgRDKEDW-MDMLPRLRNGLD 419

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  420 EKkeIVPALMLSYYHLHSHL-KRCFAYCSIFPKGYEFDEKQMVLL------------WMAEGLIQPGKQKIEM----EDL 482
Cdd:PLN03210   420 GK--IEKTLRVSYDGLNNKKdKAIFRHIACLFNGEKVNDIKLLLAnsdldvniglknLVDKSLIHVREDIVEMhsllQEM 497

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  483 GKMYFRnllsrsffQQSRQHKSR-FLMHglikklakmvAGDTCYRMKLDRVKGRQQG------SIFEKTRHSSNLAGKYD 555
Cdd:PLN03210   498 GKEIVR--------AQSNEPGEReFLVD----------AKDICDVLEDNTGTKKVLGitldidEIDELHIHENAFKGMRN 559

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  556 ----------GSEKFEVFSKLRCLRTFLPLKLPSLG-ESYLAPHVPLQLitRLRYLRVFCLRGYRITELSYSIGNLKHLR 624
Cdd:PLN03210   560 llflkfytkkWDQKKEVRWHLPEGFDYLPPKLRLLRwDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLR 637

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  625 HLDL--SETLIRSMPESITTlyNLQTLLLENCFHLNKLPSTFGNLVNLRHLNIQGAIQLEGMPTQIGkltcLRSLSNMVV 702
Cdd:PLN03210   638 NIDLrgSKNLKEIPDLSMAT--NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN----LKSLYRLNL 711

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  703 gkdNTCSGIKelgSLPHLRETLCISRLENVTRPKEAEDATLSNKSEItRLSLEWSEDIdesKDRASELEVLENLEPHeSL 782
Cdd:PLN03210   712 ---SGCSRLK---SFPDISTNISWLDLDETAIEEFPSNLRLENLDEL-ILCEMKSEKL---WERVQPLTPLMTMLSP-SL 780

                          650       660       670       680
                   ....*....|....*....|....*....|....*....|...
gi 2082505292  783 KELTIRcyggiDFPTWLRRPS----FLNMELLKIENCENCKSL 821
Cdd:PLN03210   781 TRLFLS-----DIPSLVELPSsiqnLHKLEHLEIENCINLETL 818
RX-CC_like cd14798
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ...
 11-81 1.59e-06

Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response.


Pssm-ID: 271353 [Multi-domain]  Cd Length: 124  Bit Score: 48.39  E-value: 1.59e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2082505292   11 ASIQVLLERLSS-----PQFLNFVyRRRLQRRLDELSTIEMLLEDANEKQHTERDVKAWLDDLKDLFYDVEDILDE 81
Cdd:cd14798      3 AAVSFLLEKLGElleqeADLLSGV-KEEIESLKDELESMQAFLKDADAKQDEDEELKDWVKQVRDVAYDAEDIIDS 77
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
1116-1280 1.88e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 45.69  E-value: 1.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1116 IQRCPSLESLTSSG----ELPAS------LKHVDLLKCKkLKSVADRLHHYSCLECIVIVCCeNLEYLPRDVHTLSTLRE 1185
Cdd:COG4886    109 LSNLTNLESLDLSGnqltDLPEElanltnLKELDLSNNQ-LTDLPEPLGNLTNLKSLDLSNN-QLTDLPEELGNLTNLKE 186

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1186 IDITDCP--SLSFSLGEewlPANLRALHVSDCKkMLALPKGIHNHTSLQSLTLHHCPDdVSFPEEGFPTNLKLLSISHLK 1263
Cdd:COG4886    187 LDLSNNQitDLPEPLGN---LTNLEELDLSGNQ-LTDLPEPLANLTNLETLDLSNNQL-TDLPELGNLTNLEELDLSNNQ 261

                          170
                   ....*....|....*..
gi 2082505292 1264 IIDALLEWGLNKLTSLN 1280
Cdd:COG4886    262 LTDLPPLANLTNLKTLD 278
PLN03150 PLN03150
hypothetical protein; Provisional
 605-720 2.39e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 42.50  E-value: 2.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  605 LRGYriteLSYSIGNLKHLRHLDLSETLIR-SMPESITTLYNLQTLLLENCFHLNKLPSTFGNLVNLRHLNIQGAiQLEG 683
Cdd:PLN03150   430 LRGF----IPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSG 504

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2082505292  684 -MPTQIGKLTCLRSLSNMVvgkDNT--CS--GIKELGslPHL 720
Cdd:PLN03150   505 rVPAALGGRLLHRASFNFT---DNAglCGipGLRACG--PHL 541
 
Name Accession Description Interval E-value
NB-ARC pfam00931
NB-ARC domain;
207-432 2.49e-32

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 126.73  E-value: 2.49e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  207 VIPIFGMAGIGKTTLAKFVYNNQD-VQRSFNPKVWVCVSaydGDFDVATITRAILHSMTPEINYYSSMDLNQLQVELKKL 285
Cdd:pfam00931   20 IVGIHGMGGVGKTTLAAQIFNDFDeVEGHFDSVAWVVVS---KTFTISTLQQTILQNLGLSEDDWDNKEEGELARKIRRA 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  286 LNEKRFLIVLDDVRNENyrKWTSLCAPFDAGASGSSIIVTTRHQDVMSLMSTVGVPPacRLGLLPDKDCMSILAKHALDT 365
Cdd:pfam00931   97 LLTKRFLLVLDDVWDEE--DWDKIGIPLPDRENGCRVLLTTRSEEVAGRVGGPSDPH--EVELLEPDEAWELFENKVFPK 172

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2082505292  366 RDfSAHRHLKYDAEEIVRKCEGLPLAVETVGSLLRVNNDY--WKIVSNSKMWDILNEKKE---IVPALMLSY 432
Cdd:pfam00931  173 TL-GECELLEDVAKEIVEKCRGLPLALKVLGGLLSCKKTVeeWKHVYDVLQSELKSNSYSlnsVRSILQLSY 243
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
594-787 4.30e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 82.29  E-value: 4.30e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  594 ITRLRYLRVFCLRGYRITELSYSIGNLKHLRHLDLSETLIRSMPESITTLYNLQTLLLENCfHLNKLPSTFGNLVNLRHL 673
Cdd:COG4886    132 LANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNN-QITDLPEPLGNLTNLEEL 210

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  674 NIQGAiQLEGMPTQIGKLTCLRSL--SNmvvgkdNTCSGIKELGSLPHLrETLCIS--RLENVtrPKEAEDATLS----N 745
Cdd:COG4886    211 DLSGN-QLTDLPEPLANLTNLETLdlSN------NQLTDLPELGNLTNL-EELDLSnnQLTDL--PPLANLTNLKtldlS 280

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 2082505292  746 KSEITRLSLEWSEDIDESKDRASELEVLENLEPHESLKELTI 787
Cdd:COG4886    281 NNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322
Rx_N pfam18052
Rx N-terminal domain; This entry represents the N-terminal domain found in many plant ...
 8-90 4.96e-15

Rx N-terminal domain; This entry represents the N-terminal domain found in many plant resistance proteins. This domain has been predicted to be a coiled-coil, however the structure shows that it adopts a four helical bundle fold.


Pssm-ID: 436239  Cd Length: 93  Bit Score: 71.92  E-value: 4.96e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292    8 FLAASIQVLLERLSSPQFLNFVYRRRLQRRLDELSTIEMLLEDANEKQHTERDVKAWLDDLKDLFYDVEDILDELGTKAL 87
Cdd:pfam18052    1 AVSSLLEKLGSLLAEEAKLLKGVKDDLEKLKDELESIQAFLEDAERKQITDEQVKLWLKQLRDVAYDAEDVLDEFLYEAL 80


                   ...
gi 2082505292   88 QHK 90
Cdd:pfam18052   81 RRK 83
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
576-728 1.12e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.05  E-value: 1.12e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  576 KLPSLGESYLAPHVPLQLITRLRYLRvfcLRGYRITELSYSIGNLKHLRHLDLSETLIRSMPESITTLYNLQTLLLENCf 655
Cdd:COG4886     94 DLTNLTELDLSGNEELSNLTNLESLD---LSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNN- 169

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2082505292  656 HLNKLPSTFGNLVNLRHLNIQGAiQLEGMPTQIGKLTCLRSLSnmvVGkDNTCSGI-KELGSLPHLrETLCISR 728
Cdd:COG4886    170 QLTDLPEELGNLTNLKELDLSNN-QITDLPEPLGNLTNLEELD---LS-GNQLTDLpEPLANLTNL-ETLDLSN 237
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 1170-1366 9.90e-10

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 63.36  E-value: 9.90e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1170 LEYLPRDVHTLSTLREIDI------TDCPSLSfslgeewLPANLRALHVSDCKKMLALPKGIH----------------- 1226
Cdd:PLN03210   623 LEKLWDGVHSLTGLRNIDLrgsknlKEIPDLS-------MATNLETLKLSDCSSLVELPSSIQylnkledldmsrcenle 695

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1227 ------NHTSLQSLTLHHCPDDVSFPE---------------EGFPTNLKLLSISHLKIIDALLE--WG-LNKLTSLNKL 1282
Cdd:PLN03210   696 ilptgiNLKSLYRLNLSGCSRLKSFPDistniswldldetaiEEFPSNLRLENLDELILCEMKSEklWErVQPLTPLMTM 775

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1283 eisgcphlvsfsdqmkLPKSLSSLTISHFTNLRSLSSEgLQNLTSLNELIIFECGKLTSFQKNGLPPSLSKLYISRCERL 1362
Cdd:PLN03210   776 ----------------LSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838


                   ....
gi 2082505292 1363 LSFP 1366
Cdd:PLN03210   839 RTFP 842
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 1055-1367 3.45e-08

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 58.35  E-value: 3.45e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1055 TRLKLIRIVKCDLLKHIARRQLPPTLERIEVSECEDLQYLLEDIadtssssNTTSHLQYLKIQRCPSLESLTSSGELpAS 1134
Cdd:PLN03210   634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI-------QYLNKLEDLDMSRCENLEILPTGINL-KS 705

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1135 LKHVDLLKCKKLKSVADRLHHYSCLecivIVCCENLEYLPRDVHtLSTLREIDITDCPSLSFSLGEE-------WLPANL 1207
Cdd:PLN03210   706 LYRLNLSGCSRLKSFPDISTNISWL----DLDETAIEEFPSNLR-LENLDELILCEMKSEKLWERVQpltplmtMLSPSL 780

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1208 RALHVSDCKKMLALPKGIHNHTSLQSLTLHHCPDDVSFPEegfptnlkllsishlkiidallewGLNkLTSLNKLEISGC 1287
Cdd:PLN03210   781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------------------GIN-LESLESLDLSGC 835

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1288 PHLVSFSD------QMKLPKSL---SSLTISHFTNLRSLSSEGLQNL--TSLN-------ELIIF-ECGKLTSFQKNGLP 1348
Cdd:PLN03210   836 SRLRTFPDistnisDLNLSRTGieeVPWWIEKFSNLSFLDMNGCNNLqrVSLNisklkhlETVDFsDCGALTEASWNGSP 915

                          330
                   ....*....|....*....
gi 2082505292 1349 PSLSKLYISRCERLLSFPK 1367
Cdd:PLN03210   916 SEVAMATDNIHSKLPSTVC 934
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 190-821 7.32e-07

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 54.11  E-value: 7.32e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  190 LLRMHSEtrsdaafKVNVIPIFGMAGIGKTTLAKFVYNNqdVQRSFNPKVWV-------CVSAYDG-DFDVATITRAILH 261
Cdd:PLN03210   199 LLHLESE-------EVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIdrafiskSMEIYSSaNPDDYNMKLHLQR 269

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  262 SMTPEINYYSSMDLNQLQVeLKKLLNEKRFLIVLDDVRNENYrkWTSLCAPFDAGASGSSIIVTTRHQDVMSLMSTVGVP 341
Cdd:PLN03210   270 AFLSEILDKKDIKIYHLGA-MEERLKHRKVLIFIDDLDDQDV--LDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIY 346

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  342 PACrlglLPDKD-CMSILAKHALdtRDFSAHRHLKYDAEEIVRKCEGLPLAVETVGSLLR-VNNDYWkIVSNSKMWDILN 419
Cdd:PLN03210   347 EVC----LPSNElALEMFCRSAF--KKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRgRDKEDW-MDMLPRLRNGLD 419

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  420 EKkeIVPALMLSYYHLHSHL-KRCFAYCSIFPKGYEFDEKQMVLL------------WMAEGLIQPGKQKIEM----EDL 482
Cdd:PLN03210   420 GK--IEKTLRVSYDGLNNKKdKAIFRHIACLFNGEKVNDIKLLLAnsdldvniglknLVDKSLIHVREDIVEMhsllQEM 497

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  483 GKMYFRnllsrsffQQSRQHKSR-FLMHglikklakmvAGDTCYRMKLDRVKGRQQG------SIFEKTRHSSNLAGKYD 555
Cdd:PLN03210   498 GKEIVR--------AQSNEPGEReFLVD----------AKDICDVLEDNTGTKKVLGitldidEIDELHIHENAFKGMRN 559

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  556 ----------GSEKFEVFSKLRCLRTFLPLKLPSLG-ESYLAPHVPLQLitRLRYLRVFCLRGYRITELSYSIGNLKHLR 624
Cdd:PLN03210   560 llflkfytkkWDQKKEVRWHLPEGFDYLPPKLRLLRwDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLR 637

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  625 HLDL--SETLIRSMPESITTlyNLQTLLLENCFHLNKLPSTFGNLVNLRHLNIQGAIQLEGMPTQIGkltcLRSLSNMVV 702
Cdd:PLN03210   638 NIDLrgSKNLKEIPDLSMAT--NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN----LKSLYRLNL 711

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  703 gkdNTCSGIKelgSLPHLRETLCISRLENVTRPKEAEDATLSNKSEItRLSLEWSEDIdesKDRASELEVLENLEPHeSL 782
Cdd:PLN03210   712 ---SGCSRLK---SFPDISTNISWLDLDETAIEEFPSNLRLENLDEL-ILCEMKSEKL---WERVQPLTPLMTMLSP-SL 780

                          650       660       670       680
                   ....*....|....*....|....*....|....*....|...
gi 2082505292  783 KELTIRcyggiDFPTWLRRPS----FLNMELLKIENCENCKSL 821
Cdd:PLN03210   781 TRLFLS-----DIPSLVELPSsiqnLHKLEHLEIENCINLETL 818
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
611-788 8.44e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 53.01  E-value: 8.44e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  611 TELSYSIGNLKHLRHLDLSETL-----------------IRSMPESITTLYNLQTLLLENCfHLNKLPSTFGNLVNLRHL 673
Cdd:COG4886     86 LLGLTDLGDLTNLTELDLSGNEelsnltnlesldlsgnqLTDLPEELANLTNLKELDLSNN-QLTDLPEPLGNLTNLKSL 164

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  674 NIQGAiQLEGMPTQIGKLTCLRSLSnmvVGkDNTCSGI-KELGSLPHLRE-TLCISRLENVTRPkeaedatLSNKSEITR 751
Cdd:COG4886    165 DLSNN-QLTDLPEELGNLTNLKELD---LS-NNQITDLpEPLGNLTNLEElDLSGNQLTDLPEP-------LANLTNLET 232

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 2082505292  752 LSLewsedideSKDRASELEVLENLephESLKELTIR 788
Cdd:COG4886    233 LDL--------SNNQLTDLPELGNL---TNLEELDLS 258
RX-CC_like cd14798
Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato ...
 11-81 1.59e-06

Coiled-coil domain of the potato virux X resistance protein and similar proteins; The potato virus X resistance protein (RX) confers resistance against potato virus X. It is a member of a family of resistance proteins with a domain architecture that includes an N-terminal coiled-coil domain (modeled here), a nucleotide-binding domain, and leucine-rich repeats (CC-NB-LRR). These intracellular resistance proteins recognize pathogen effector proteins and will subsequently trigger a response that may be as severe as localized cell death. The N-terminal coiled-coil domain of RX has been shown to interact with RanGAP2, which is a necessary co-factor in the resistance response.


Pssm-ID: 271353 [Multi-domain]  Cd Length: 124  Bit Score: 48.39  E-value: 1.59e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2082505292   11 ASIQVLLERLSS-----PQFLNFVyRRRLQRRLDELSTIEMLLEDANEKQHTERDVKAWLDDLKDLFYDVEDILDE 81
Cdd:cd14798      3 AAVSFLLEKLGElleqeADLLSGV-KEEIESLKDELESMQAFLKDADAKQDEDEELKDWVKQVRDVAYDAEDIIDS 77
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
1116-1280 1.88e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 45.69  E-value: 1.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1116 IQRCPSLESLTSSG----ELPAS------LKHVDLLKCKkLKSVADRLHHYSCLECIVIVCCeNLEYLPRDVHTLSTLRE 1185
Cdd:COG4886    109 LSNLTNLESLDLSGnqltDLPEElanltnLKELDLSNNQ-LTDLPEPLGNLTNLKSLDLSNN-QLTDLPEELGNLTNLKE 186

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1186 IDITDCP--SLSFSLGEewlPANLRALHVSDCKkMLALPKGIHNHTSLQSLTLHHCPDdVSFPEEGFPTNLKLLSISHLK 1263
Cdd:COG4886    187 LDLSNNQitDLPEPLGN---LTNLEELDLSGNQ-LTDLPEPLANLTNLETLDLSNNQL-TDLPELGNLTNLEELDLSNNQ 261

                          170
                   ....*....|....*..
gi 2082505292 1264 IIDALLEWGLNKLTSLN 1280
Cdd:COG4886    262 LTDLPPLANLTNLKTLD 278
PRK15386 PRK15386
type III secretion effector GogB;
1203-1322 1.33e-03

type III secretion effector GogB;


Pssm-ID: 237954 [Multi-domain]  Cd Length: 426  Bit Score: 42.93  E-value: 1.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292 1203 LPANLRALHVSDCKKMLALPKGIHnhTSLQSLTLHHCPDDVSFPE---------------EGFPTNLKLLSISHLK---- 1263
Cdd:PRK15386    70 LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPEsvrsleikgsatdsiKNVPNGLTSLSINSYNpenq 147

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2082505292 1264 -IIDALLEwglnklTSLNKLEISGCPHLVSfsdQMKLPKSLSSLTISHFTNLR-SLSSEGL 1322
Cdd:PRK15386   148 aRIDNLIS------PSLKTLSLTGCSNIIL---PEKLPESLQSITLHIEQKTTwNISFEGF 199
PLN03150 PLN03150
hypothetical protein; Provisional
 605-720 2.39e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 42.50  E-value: 2.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  605 LRGYriteLSYSIGNLKHLRHLDLSETLIR-SMPESITTLYNLQTLLLENCFHLNKLPSTFGNLVNLRHLNIQGAiQLEG 683
Cdd:PLN03150   430 LRGF----IPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSG 504

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2082505292  684 -MPTQIGKLTCLRSLSNMVvgkDNT--CS--GIKELGslPHL 720
Cdd:PLN03150   505 rVPAALGGRLLHRASFNFT---DNAglCGipGLRACG--PHL 541
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 610-721 9.92e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 40.60  E-value: 9.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082505292  610 ITELSYSignlkhLRHLDLSET-LIRSMPESitTLYNLQTLLLENCFHLNKLPSTFGNLVNLRHLNIQGAIQLEGMPTQI 688
Cdd:PLN00113   113 IFTTSSS------LRYLNLSNNnFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2082505292  689 GKLTCLRSL---SNMVVGkdntcsGI-KELGSLPHLR 721
Cdd:PLN00113   185 TNLTSLEFLtlaSNQLVG------QIpRELGQMKSLK 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH