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Conserved domains on  [gi|2082492708|ref|XP_042960257|]
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60S ribosomal protein L14-1-like [Carya illinoinensis]

Protein Classification

PTZ00065 superfamily protein( domain architecture ID 1904283)

PTZ00065 superfamily protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
eL14 cd23702
Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the ...
 2-96 1.50e-25

Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the large subunit (LSU) of the microsporidian ribosome that reveals a prokaryotic-like rRNA core covered with eukaryotic ribosomal proteins.


:

Pssm-ID: 467915 [Multi-domain]  Cd Length: 82  Bit Score: 90.97  E-value: 1.50e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082492708   2 IGRVALVNYDEDYGKLVVLVDVIDQNRALVDAPD--MERSQMNFKRLSLIDLKIDIkrvpkkkelldamekadvkKKWTD 79
Cdd:cd23702     5 VGRVVLINYGPDAGKLAVIVDIIDQNRVLVDGPKtgVKRQVVNLKRLSLTDFVVKI-------------------PNLTD 65

                          90
                  ....*....|....*..
gi 2082492708  80 FDRFKLMLAKIKRAGLV 96
Cdd:cd23702    66 FDRFKVMLAKKKRRKLV 82
 
Name Accession Description Interval E-value
eL14 cd23702
Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the ...
 2-96 1.50e-25

Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the large subunit (LSU) of the microsporidian ribosome that reveals a prokaryotic-like rRNA core covered with eukaryotic ribosomal proteins.


Pssm-ID: 467915 [Multi-domain]  Cd Length: 82  Bit Score: 90.97  E-value: 1.50e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082492708   2 IGRVALVNYDEDYGKLVVLVDVIDQNRALVDAPD--MERSQMNFKRLSLIDLKIDIkrvpkkkelldamekadvkKKWTD 79
Cdd:cd23702     5 VGRVVLINYGPDAGKLAVIVDIIDQNRVLVDGPKtgVKRQVVNLKRLSLTDFVVKI-------------------PNLTD 65

                          90
                  ....*....|....*..
gi 2082492708  80 FDRFKLMLAKIKRAGLV 96
Cdd:cd23702    66 FDRFKVMLAKKKRRKLV 82
PTZ00065 PTZ00065
60S ribosomal protein L14; Provisional
 3-101 5.82e-16

60S ribosomal protein L14; Provisional


Pssm-ID: 240252 [Multi-domain]  Cd Length: 130  Bit Score: 67.86  E-value: 5.82e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082492708   3 GRVALVNYDEDYGKLVVLVDVIDQNRALVDAPD---MERSQMNFKRLSLIDLKIDIKRVPKKKELLDAMEKADV------ 73
Cdd:PTZ00065   11 GRLCLIQYGPDAGKLCFIVDIVTPTRVLVDGAFitgVKRQSIPLKRLKLTDEKIKINRGARTGTLKKALKKDNAleefnk 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2082492708  74 ------------KKKWTDFDRFKLMLAKIKRAGLVRQELA 101
Cdd:PTZ00065   91 tslgkkliikekRANMTDFERFKLMVAKKERRKLMKSLKK 130
Ribosomal_L14e pfam01929
Ribosomal protein L14; This family includes the eukaryotic ribosomal protein L14.
 38-93 9.41e-14

Ribosomal protein L14; This family includes the eukaryotic ribosomal protein L14.


Pssm-ID: 460388  Cd Length: 74  Bit Score: 60.98  E-value: 9.41e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2082492708  38 RSQMNFKRLSLIDLKIDIKRVPKKKELLDAMEKADVKKKW------------------TDFDRFKLMLAKIKRA 93
Cdd:pfam01929   1 RQVIPLKRLHLTKFVIKLPRGARTGAVKKAWEKADVDEKWaesawakklaarekranlTDFDRFKVMVAKKQRR 74
 
Name Accession Description Interval E-value
eL14 cd23702
Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the ...
 2-96 1.50e-25

Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the large subunit (LSU) of the microsporidian ribosome that reveals a prokaryotic-like rRNA core covered with eukaryotic ribosomal proteins.


Pssm-ID: 467915 [Multi-domain]  Cd Length: 82  Bit Score: 90.97  E-value: 1.50e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082492708   2 IGRVALVNYDEDYGKLVVLVDVIDQNRALVDAPD--MERSQMNFKRLSLIDLKIDIkrvpkkkelldamekadvkKKWTD 79
Cdd:cd23702     5 VGRVVLINYGPDAGKLAVIVDIIDQNRVLVDGPKtgVKRQVVNLKRLSLTDFVVKI-------------------PNLTD 65

                          90
                  ....*....|....*..
gi 2082492708  80 FDRFKLMLAKIKRAGLV 96
Cdd:cd23702    66 FDRFKVMLAKKKRRKLV 82
PTZ00065 PTZ00065
60S ribosomal protein L14; Provisional
 3-101 5.82e-16

60S ribosomal protein L14; Provisional


Pssm-ID: 240252 [Multi-domain]  Cd Length: 130  Bit Score: 67.86  E-value: 5.82e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2082492708   3 GRVALVNYDEDYGKLVVLVDVIDQNRALVDAPD---MERSQMNFKRLSLIDLKIDIKRVPKKKELLDAMEKADV------ 73
Cdd:PTZ00065   11 GRLCLIQYGPDAGKLCFIVDIVTPTRVLVDGAFitgVKRQSIPLKRLKLTDEKIKINRGARTGTLKKALKKDNAleefnk 90

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2082492708  74 ------------KKKWTDFDRFKLMLAKIKRAGLVRQELA 101
Cdd:PTZ00065   91 tslgkkliikekRANMTDFERFKLMVAKKERRKLMKSLKK 130
KOW_RPL14 cd06088
KOW motif of Ribosomal Protein L14; RPL14 is a component of the large ribosomal subunit in ...
 2-72 1.23e-15

KOW motif of Ribosomal Protein L14; RPL14 is a component of the large ribosomal subunit in both archaea and eukaryotes with KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. Auto-antibodies to RPL14 in humans have been associated with systemic lupus erythematosus . Although RPL14 is well conserved, it is not found in all archaea, and therefore it is presumably not essential.


Pssm-ID: 240512  Cd Length: 76  Bit Score: 65.57  E-value: 1.23e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2082492708   2 IGRVALVNYDEDYGKLVVLVDVIDQNRALVDAP---DMERSQMNFKRLSLIDLKIDIKRVPKKKELLDAMEKAD 72
Cdd:cd06088     3 IGRVVLSKAGRDKGKLYVIVDIIDENVVLVDGPlrtGVKPKKKNLKHLQLTDFVIDIPRGARTKGVKKANEKLR 76
Ribosomal_L14e pfam01929
Ribosomal protein L14; This family includes the eukaryotic ribosomal protein L14.
 38-93 9.41e-14

Ribosomal protein L14; This family includes the eukaryotic ribosomal protein L14.


Pssm-ID: 460388  Cd Length: 74  Bit Score: 60.98  E-value: 9.41e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2082492708  38 RSQMNFKRLSLIDLKIDIKRVPKKKELLDAMEKADVKKKW------------------TDFDRFKLMLAKIKRA 93
Cdd:pfam01929   1 RQVIPLKRLHLTKFVIKLPRGARTGAVKKAWEKADVDEKWaesawakklaarekranlTDFDRFKVMVAKKQRR 74
PRK04333 PRK04333
50S ribosomal protein L14e; Validated
 2-71 1.64e-06

50S ribosomal protein L14e; Validated


Pssm-ID: 235283  Cd Length: 84  Bit Score: 42.36  E-value: 1.64e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2082492708   2 IGRVALVNYDEDYGKLVVLVDVIDQNRALVDAPD---MERSQMNFKRLSLIDLKIDIKRVPKKKELLDAMEKA 71
Cdd:PRK04333    6 VGRVCVKTAGREAGRKCVIVDIIDKNFVLVTGPSltgVKRRRCNIKHLEPTDKKVDIEKGASDEEVKKALEAA 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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