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Conserved domains on  [gi|2079966717|gb|QYV98655|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Colomys eisentrauti]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl31798
NADH dehydrogenase subunit 2; Provisional
 1-220 2.50e-87

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00105:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 261.32  E-value: 2.50e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   1 IILLAITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNL 80
Cdd:MTH00105   69 LLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPS 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  81 INPTITLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSIN 160
Cdd:MTH00105  149 INPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTL 228

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 161 SISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00105  229 SLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALL 288
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-220 2.50e-87

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 261.32  E-value: 2.50e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   1 IILLAITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNL 80
Cdd:MTH00105   69 LLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPS 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  81 INPTITLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSIN 160
Cdd:MTH00105  149 INPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTL 228

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 161 SISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00105  229 SLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALL 288
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 15-200 8.17e-16

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 74.27  E-value: 8.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  15 TWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILL-TWQKIAPLSI-----LLQIYNLINPTITLT 88
Cdd:pfam00361  73 TGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLI 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  89 LAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIIS----FNPSLTLLNLAIYIMLTIPMF-----MVLSMNTSTSI 159
Cdd:pfam00361 153 LAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNI 232

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2079966717 160 NSISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIIT 200
Cdd:pfam00361 233 RDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-178 2.29e-15

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 74.00  E-value: 2.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   7 TLNYKQLGTWMFQQQTNSLI----ITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLIN 82
Cdd:COG1007   182 SLNLAGIAAALAAGGANSPLlllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAF 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  83 PTITLT-------LAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMM-AIISFNP---SLTLLNLAIYIMLTIPMFMVL 151
Cdd:COG1007   262 PGLAADwqlllavLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlGLAAGTPlgvSAALFYLLAYLFMNLGAFAVI 341

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2079966717 152 SM-----NTSTSINSISLLWNKTPTTLTMMSI 178
Cdd:COG1007   342 LLlsrkgGEAEEIEDLAGLARRSPLLALAMTI 373
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 27-220 5.16e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 67.28  E-value: 5.16e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  27 ITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLI-------NPTITLTLAISSIFIGAW 99
Cdd:TIGR01770 206 IVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAIIAFLSMLIGNF 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 100 GGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSL----TLLNLAIYIMLTIPMFMVLSMNTST------SINSISLLWNKT 169
Cdd:TIGR01770 286 GALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYkdewieYISDFAGLFKTN 365

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2079966717 170 PTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:TIGR01770 366 PILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVI 416
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-220 2.50e-87

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 261.32  E-value: 2.50e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   1 IILLAITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNL 80
Cdd:MTH00105   69 LLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPS 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  81 INPTITLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSIN 160
Cdd:MTH00105  149 INPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTL 228

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 161 SISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00105  229 SLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALL 288
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-220 1.79e-74

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 228.54  E-value: 1.79e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   1 IILLAITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNL 80
Cdd:MTH00135   69 MILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  81 iNPTITLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSIN 160
Cdd:MTH00135  149 -NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKIN 227

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 161 SISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00135  228 TLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALL 287
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 2-220 6.90e-66

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 206.70  E-value: 6.90e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   2 ILLAITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLI 81
Cdd:MTH00070   70 ILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLL 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  82 NPTITLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSINS 161
Cdd:MTH00070  150 NSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINK 229

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2079966717 162 ISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00070  230 LSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALL 288
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-220 3.18e-64

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 202.36  E-value: 3.18e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   1 IILLAITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNL 80
Cdd:MTH00112   69 LILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNS 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  81 INPTITLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSIN 160
Cdd:MTH00112  149 LNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLK 228

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 161 SISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00112  229 DMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLL 288
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-220 1.48e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 164.76  E-value: 1.48e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   1 IILLAITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNL 80
Cdd:MTH00200   69 LLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPA 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  81 INPTITLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSIN 160
Cdd:MTH00200  149 LNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKIN 228

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 161 SISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00200  229 SLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLL 288
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-220 2.49e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 153.93  E-value: 2.49e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   1 IILLAITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNL 80
Cdd:MTH00041   69 ILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNL 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  81 INPTITLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSIN 160
Cdd:MTH00041  149 LNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLS 228

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 161 SISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00041  229 HLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLL 288
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 16-220 1.93e-28

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 109.10  E-value: 1.93e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  16 WMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLINPTITLTLAISSIF 95
Cdd:MTH00011   80 WSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSAL 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  96 IGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSINSISLLWNKTPTTLTM 175
Cdd:MTH00011  160 AGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMS 239

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2079966717 176 MSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00011  240 LFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLM 284
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 17-220 5.16e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 108.05  E-value: 5.16e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  17 MFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLINPTITL-TLAISSIF 95
Cdd:MTH00144   77 MYNLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLcVISVLSAL 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  96 IGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSINSISLLWNKTPTTLTM 175
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSI 236

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2079966717 176 MSItLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00144  237 ISL-LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLI 280
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 17-220 5.67e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 105.29  E-value: 5.67e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  17 MFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSIllqIYNLINPTITLTLAISSIFI 96
Cdd:MTH00160   80 LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLIL---LSYLINNNFIIIIIILSAII 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  97 GAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSINSISLLWNKTPTTLTMM 176
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2079966717 177 SITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLI 280
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 22-220 2.77e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 95.12  E-value: 2.77e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  22 TNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNliNPTITLTLAISSIFIGAWGG 101
Cdd:MTH00197   77 LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGG 154

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 102 LNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYIMLTIPMFMVLSMNTSTSINSISLLWNKTPTTLTMMSITLL 181
Cdd:MTH00197  155 MNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFL 234

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2079966717 182 SLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:MTH00197  235 SLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCF 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 29-199 1.25e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 80.07  E-value: 1.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  29 MVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLINptITLTLAISSIFIGAWGGLNQTQMR 108
Cdd:MTH00196  100 LIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFSLFVGAIGALNQTKIK 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 109 KIMAYSSIAHMG---WMMAIISFNP-SLTLLNLAIYIMLTIPMFM-VLSMNTSTS-INSISLLWNKTPTTLTMMSITLLS 182
Cdd:MTH00196  178 RLLAYSGIGHMGfvlWGIEIGSFESiQASLVYLFIYIIMSICVFSiILALNVYKNlIIEFSGLSRRLPILAITLALTFLS 257

                         170
                  ....*....|....*..
gi 2079966717 183 LGGLPPLTGFLPKWIII 199
Cdd:MTH00196  258 IAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 29-199 2.50e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 76.98  E-value: 2.50e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  29 MVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLINptITLTLAISSIFIGAWGGLNQTQMR 108
Cdd:MTH00199  195 LITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAIGALNQTKIK 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 109 KIMAYSSIAHMG---WMMAIISFNP-SLTLLNLAIYIMLTIPMF-MVLSMN-TSTSINSISLLWNKTPTTLTMMSITLLS 182
Cdd:MTH00199  273 RLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFsIILSLKlTKGLIVEVSGLSRKNPVIALTLALTFLS 352

                         170
                  ....*....|....*..
gi 2079966717 183 LGGLPPLTGFLPKWIII 199
Cdd:MTH00199  353 IAGIPPLAGFLSKWLIL 369
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 15-200 8.17e-16

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 74.27  E-value: 8.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  15 TWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILL-TWQKIAPLSI-----LLQIYNLINPTITLT 88
Cdd:pfam00361  73 TGGLNSSGLLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLirrslLYLPSSPFIQQILLI 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  89 LAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIIS----FNPSLTLLNLAIYIMLTIPMF-----MVLSMNTSTSI 159
Cdd:pfam00361 153 LAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNI 232

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2079966717 160 NSISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIIT 200
Cdd:pfam00361 233 RDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-178 2.29e-15

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 74.00  E-value: 2.29e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   7 TLNYKQLGTWMFQQQTNSLI----ITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLIN 82
Cdd:COG1007   182 SLNLAGIAAALAAGGANSPLlllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAF 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  83 PTITLT-------LAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMM-AIISFNP---SLTLLNLAIYIMLTIPMFMVL 151
Cdd:COG1007   262 PGLAADwqlllavLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLlGLAAGTPlgvSAALFYLLAYLFMNLGAFAVI 341

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2079966717 152 SM-----NTSTSINSISLLWNKTPTTLTMMSI 178
Cdd:COG1007   342 LLlsrkgGEAEEIEDLAGLARRSPLLALAMTI 373
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
29-153 1.95e-14

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 71.39  E-value: 1.95e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  29 MVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLINPTITLT-------LAISSIFIGAWGG 101
Cdd:PRK05777  209 FLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGGLSEDwqqvlaiIAIASMLVGNLAA 288

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2079966717 102 LNQTQMRKIMAYSSIAHMGWMM-AIISFNP---SLTLLNLAIYIMLTIPMFMVLSM 153
Cdd:PRK05777  289 LSQTNIKRLLAYSSIAHAGYLLvGLAAGTAegySAVLFYLLAYLFMTLGAFGVISL 344
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 27-220 5.16e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 67.28  E-value: 5.16e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  27 ITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLI-------NPTITLTLAISSIFIGAW 99
Cdd:TIGR01770 206 IVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAIIAFLSMLIGNF 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 100 GGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSL----TLLNLAIYIMLTIPMFMVLSMNTST------SINSISLLWNKT 169
Cdd:TIGR01770 286 GALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYkdewieYISDFAGLFKTN 365

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2079966717 170 PTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTILTTMMAIMALL 220
Cdd:TIGR01770 366 PILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVI 416
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 24-127 6.26e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 58.33  E-value: 6.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  24 SLIITMVLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIynLINPTITLTLAISSIFIGAWGGLN 103
Cdd:MTH00198  299 SLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL--VITSKLLLSVAIISLVVGAFGALN 376

                          90       100
                  ....*....|....*....|....
gi 2079966717 104 QTQMRKIMAYSSIAHMGWMMAIIS 127
Cdd:MTH00198  377 QTRIKRLLAYSGIGHIGFILIGVS 400
ndhB CHL00049
NADH dehydrogenase subunit 2
 18-147 1.79e-08

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 53.85  E-value: 1.79e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  18 FQQQTNSLIITMVLIS----LSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLINPTIT------- 86
Cdd:CHL00049  204 NTQMYNSPGISIALIFitvgIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFSSnewhlll 283

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2079966717  87 LTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMM-AIISFNPSLTLLNLAIYIMLTIPM 147
Cdd:CHL00049  284 EILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIiGIIVGDSNDGYASMITYMLFYIFM 345
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-220 1.67e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 50.92  E-value: 1.67e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   1 IILLAITLNYKQLGTWMF----------QQQTNSLIITMVLISLSMKLGLAPFHYWLPE-----------VTQGIELHTG 59
Cdd:COG0651   172 LFLLGVGLLYGATGTLNMadlaarlaelDPGLLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVG 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  60 L--ILLTWQKIAPLSILLQIYNLInptitLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNL 137
Cdd:COG0651   252 VyaILRVLTLLFGADPALFLGTLL-----LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGA 326

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 138 AIYI----MLTIPMFM----VLSMNTSTSINSISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELLKNDCTI 209
Cdd:COG0651   327 LFHLlnhaLAKALLFLaagaIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWL 406

                         250
                  ....*....|.
gi 2079966717 210 LTTMMAIMALL 220
Cdd:COG0651   407 LAAVLLLSSLL 417
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 5-130 6.57e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.92  E-value: 6.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   5 AITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPEV-----TQGIELHTGLILltwqKIA-------PLS 72
Cdd:COG1008   190 ALTFDIAELAAAPLPLTAQLLLFLAFFIAFAVKVPMFPFHTWLPDAhveapTAGSVLLAGVLL----KMGgygllrfALP 265

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2079966717  73 ILLQIYNLINPTItLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWM-MAIISFNP 130
Cdd:COG1008   266 LFPEASAYFAPLL-AALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNP 323
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 31-130 1.06e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 48.40  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  31 LISLSMKLGLAPFHYWLPEV-----TQGIELHTGLILltwqKIAP---LSILLQIY---NLINPTITLTLAISSIFIGAW 99
Cdd:TIGR01972 210 FIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTygfLRFNLPLFpdaSLYFAPVLAALGVIAIIYGAL 285

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2079966717 100 GGLNQTQMRKIMAYSSIAHMGW-MMAIISFNP 130
Cdd:TIGR01972 286 IALAQTDIKRLIAYSSISHMGFvLLGIFSFNE 317
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
10-135 1.27e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 48.17  E-value: 1.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  10 YKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLP----EVTQGIELHTGLILLTWQKIAPLSILLQIY----NLI 81
Cdd:PRK07363  191 YDAISTQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAKLGTYGLLRFGLQLFpqtwSLV 270

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2079966717  82 NPTITLTLAISSIFiGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLL 135
Cdd:PRK07363  271 APGLAIIGTISVIY-GALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
5-123 1.85e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.77  E-value: 1.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   5 AITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLP----EVTQGIELHTGLILLTWQKIAPL----SILLQ 76
Cdd:PRK06473  186 ASSFDYEPLRSHTLPLSTQLLLLAPILVGFGIKIPLVPFHTWLPdahvEASTPVSVLLAGVLLKLGTYGLLrfgvGLFPE 265

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2079966717  77 IYNLINPTITlTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMM 123
Cdd:PRK06473  266 AWVYLAPWLA-TWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYIL 311
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 31-129 4.24e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.73  E-value: 4.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  31 LISLSMKLGLAPFHYWLPEV-----TQGIELHTGLILltwqKIAP---LSILLQIYNLIN---PTITLTLAISSIFIGAW 99
Cdd:PRK05846  218 FIAFAVKMPMFPLHTWLPDAhvqapTAGSVLLAGILL----KMGAyglLRFSLPLFPDAShefAPIIITLGVIAIIYGAL 293

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2079966717 100 GGLNQTQMRKIMAYSSIAHMGW-MMAIISFN 129
Cdd:PRK05846  294 VALAQTDIKKLIAYSSISHMGFvTLGIFAGN 324
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-123 2.46e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 44.32  E-value: 2.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   1 IILLAITLNYKQLGTW--------MFQQQTNSLIITMVLI--SLSMKLGLAPFHYWLPEVTQGIELHTGLILLTwQKIAP 70
Cdd:PRK08376  187 MVLLGIALLYGQYGTLnmaylavkMSENPTVVAKIALALFiaGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLV-IKQAG 265

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2079966717  71 LSILLQI-YNLINPTITLT--------LAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMM 123
Cdd:PRK08376  266 LYALARVlFSIYGPAINLAtvgwviiiLGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML 327
PRK12650 PRK12650
DUF4040 family protein;
20-203 8.32e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.11  E-value: 8.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  20 QQTNSLIITMVLISLS--MKLGLAPFHYWLPEVTQGIE-----LHT------GLILLTwqKIAPLSILLQIYNLINPTIT 86
Cdd:PRK12650  202 EKPGLTTVVAVLIAVAafTKSAQFPFHFWLPEAMAAITpvsafLHAaavvkaGIYLLL--RFSPVFHDVAVWNWLLIIVG 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  87 LTLAIssifIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNpslTLLNLAIYIMLTIP-------MFM---VLSMNTS 156
Cdd:PRK12650  280 MITAL----MGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVG---TPFALTAAVVHTLAhalfkssLFMligVVDHQAG 352

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2079966717 157 T-SINSISLLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELL 203
Cdd:PRK12650  353 TrDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFL 400
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 2-143 9.03e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 42.73  E-value: 9.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   2 ILLAITLNYKQLGTWMFQ--------QQTNSLIITMVLISLSMKLGLAPFHYWLPE-----------VTQGIELHTG--- 59
Cdd:MTH00217  176 MLLGIFTLYSYAGTTDYQalcclkieKELQYFIFLGFFLSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKLGgyg 255

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  60 LILLTWqkiaplSILLQIYNLINPTItLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIIsFNPSLTLLNLAI 139
Cdd:MTH00217  256 FIRFSW------PLLPEASEYFSPLI-QTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGI-FSHTIQGLVAAI 327


                  ....
gi 2079966717 140 YIML 143
Cdd:MTH00217  328 FLML 331
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-203 3.55e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 41.02  E-value: 3.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  29 MVLISLSMKLGLAPFHYWLPE--------VTQgieLHTGLILltwqKIAPLSILLQIYNLINP---------TITLTLAI 91
Cdd:PRK08375  207 FVLLALALKAAVFPLHTWLPRaypaappvVTA---LLSGLVT----KVAVYALIRIYFTVFGGdfrfalglgWLLAVLAL 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  92 SSIFIGAWGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTLLNLAIYI---MLT-IPMFMVLSM----NTSTSINSIS 163
Cdd:PRK08375  280 LSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhALMkGALFLAAGAievtYGTRRLSELS 359

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2079966717 164 LLWNKTPTTLTMMSITLLSLGGLPPLTGFLPKWIIITELL 203
Cdd:PRK08375  360 GLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAV 399
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 32-199 6.50e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.33  E-value: 6.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  32 ISLSMKLGLapfHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLINPTiTLTLAISSIF------IGAWGGLNQT 105
Cdd:MTH00032  236 IGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKA-PLTLLIITIFgaltafFAATVGLVQN 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 106 QMRKIMAYSSIAHMGWMMAIISFNPS--LTLLNLAIYIMLTIPMFM-----VLSMNT-STSINSISLLWNKTPTTLTMMS 177
Cdd:MTH00032  312 DLKKVIAYSTCSQLGYMVLIIGIEGShnVGLFHLVNHAFFKALLFLsagsvIHSTTVdEQDMRKMGGLIHSIPFTYTMML 391

                         170       180
                  ....*....|....*....|..
gi 2079966717 178 ITLLSLGGLPPLTGFLPKWIII 199
Cdd:MTH00032  392 IGSFSIMGLPYLTGFYSKDLIL 413
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 6-129 8.10e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 40.01  E-value: 8.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   6 ITLNYKQLGTWMFQQQTNSLIITMVLISLSMKLGLAPFHYWLPE-----------VTQGIELHTG---LILLTWQ----- 66
Cdd:PRK12561  167 FTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMGgyaLIRFNVQmlpda 246

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2079966717  67 --KIAPLSILLQIYNLInptitltlaissifigaWGGLN---QTQMRKIMAYSSIAHMGW-MMAIISFN 129
Cdd:PRK12561  247 hvYFAPALAILGVVNII-----------------YGALNafaQDNVKRRLAYSSVSHMGFvLLGIAAFT 298
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 28-134 1.05e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 39.35  E-value: 1.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  28 TMVLISLSMKLGLAPFHYWLPEV-TQGIELHTGLILLTWQKIAPLSILlQIYNLINPT--------ITLTLAISSIFIGA 98
Cdd:PRK08676  210 LFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGIL-RLSALLRQSgaaeqfsnVLIGLGIFSIAVAA 288

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2079966717  99 WGGLNQTQMRKIMAYSSIAHMGWMMAIISFNPSLTL 134
Cdd:PRK08676  289 FSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLAL 324
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
30-195 1.82e-03

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 38.88  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  30 VLISLSMKLGLAPFHYWLPEVTQGIELHTGLILLTWQKIAPLSILLQIYNLINPTIT-------LTLAISSIFIGAWGGL 102
Cdd:PRK02504  216 VIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSFDeqwkllfTALAILSMVLGNVVAL 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717 103 NQTQMRKIMAYSSIAHMGWMMAIISFNP----SLTLLNLAIYIMLTIPMFM---VLSMNTSTS-INSISLLWNKTPTTLT 174
Cdd:PRK02504  296 AQTSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYLFMNLGAFAcviLFSLRTGTDqISDYAGLYQKDPLLTL 375

                         170       180
                  ....*....|....*....|.
gi 2079966717 175 MMSITLLSLGGLPPLTGFLPK 195
Cdd:PRK02504  376 GLSLCLLSLGGIPPLAGFFGK 396
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 20-143 2.07e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.75  E-value: 2.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  20 QQTNSLIITMVLISLSMKLGLAPFHYWLPE-----------VTQGIELHTG---LILLTWqKIAPLSIllqiyNLINPTI 85
Cdd:MTH00226  226 EQTQKWIFLGIFLAMAVKIPIFPFHIWLPKahveapvagsvLLAGILLKLGgygLVRLSW-PILPLGA-----QNLAPAV 299

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2079966717  86 tLTLAISSIFIGAWGGLNQTQMRKIMAYSSIAHMGwMMAIISFNPSLTLLNLAIYIML 143
Cdd:MTH00226  300 -IAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIML 355
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 3-124 2.25e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.59  E-value: 2.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717   3 LLAITLNYKQLGTWMF-------QQQTNSLIITMVLISLSM----KLGLAPFHYWLPE-----------------VTQGI 54
Cdd:COG1009   179 LLGILLLGAIAGTLNFsellaaaPTILSSPLLTLILLLLLLgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGV 258

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079966717  55 ELhtglilltwqkIAPLSILLQIYNLINPTITLTLAISSIFiGAWGGLNQTQMRKIMAYSSIAHMGWMMA 124
Cdd:COG1009   259 YL-----------LARLSPLFALSPVWLTVVAIIGAITALF-AALIALAQTDIKRVLAYSTVSQLGYMFL 316
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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