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Conserved domains on  [gi|2079607369|gb|QYU72332|]
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ribosomal protein S17, partial [Drosophila qiongzhouensis]

Protein Classification

eS17 family ribosomal protein( domain architecture ID 10467170)

eS17 family ribosomal protein is a component of the small ribosomal subunit.

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S17e pfam00833
Ribosomal S17;
1-60 6.16e-37

Ribosomal S17;


:

Pssm-ID: 425895  Cd Length: 122  Bit Score: 118.89  E-value: 6.16e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079607369   1 KKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGI 60
Cdd:pfam00833  10 KKAARVIIEKYYSRLTNDFHTNKRICEEVAIIPSKRLRNKIAGYVTHLMKRIQRGPVRGI 69
 
Name Accession Description Interval E-value
Ribosomal_S17e pfam00833
Ribosomal S17;
1-60 6.16e-37

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 118.89  E-value: 6.16e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079607369   1 KKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGI 60
Cdd:pfam00833  10 KKAARVIIEKYYSRLTNDFHTNKRICEEVAIIPSKRLRNKIAGYVTHLMKRIQRGPVRGI 69
PTZ00154 PTZ00154
40S ribosomal protein S17; Provisional
 1-60 6.04e-33

40S ribosomal protein S17; Provisional


Pssm-ID: 240295  Cd Length: 134  Bit Score: 109.35  E-value: 6.04e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079607369   1 KKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGI 60
Cdd:PTZ00154   10 KRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKRIQKGPVRGI 69
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-54 7.54e-14

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 58.72  E-value: 7.54e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 2079607369  1 KKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRH 54
Cdd:COG1383   10 KRIARELLEKYPDLFTEDFEENKKLVEELTDVESKRVRNRIAGYITRKVKKRKR 63
 
Name Accession Description Interval E-value
Ribosomal_S17e pfam00833
Ribosomal S17;
1-60 6.16e-37

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 118.89  E-value: 6.16e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079607369   1 KKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGI 60
Cdd:pfam00833  10 KKAARVIIEKYYSRLTNDFHTNKRICEEVAIIPSKRLRNKIAGYVTHLMKRIQRGPVRGI 69
PTZ00154 PTZ00154
40S ribosomal protein S17; Provisional
 1-60 6.04e-33

40S ribosomal protein S17; Provisional


Pssm-ID: 240295  Cd Length: 134  Bit Score: 109.35  E-value: 6.04e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2079607369   1 KKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGI 60
Cdd:PTZ00154   10 KRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKRIQKGPVRGI 69
rps17E PRK01151
30S ribosomal protein S17e; Validated
 1-50 7.64e-15

30S ribosomal protein S17e; Validated


Pssm-ID: 179234  Cd Length: 58  Bit Score: 61.04  E-value: 7.64e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 2079607369  1 KKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMG 50
Cdd:PRK01151   9 KRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK 58
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-54 7.54e-14

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 58.72  E-value: 7.54e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 2079607369  1 KKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRH 54
Cdd:COG1383   10 KRIARELLEKYPDLFTEDFEENKKLVEELTDVESKRVRNRIAGYITRKVKKRKR 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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