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Conserved domains on  [gi|2074038094|dbj|BCS84076|]
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cytochrome b, partial (mitochondrion) [Hynobius utsunomiyaorum]

Protein Classification

cytochrome b( domain architecture ID 1000033)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31791
cytochrome b; Provisional
 1-210 1.82e-167

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00074:

Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 465.69  E-value: 1.82e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2074038094 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPT 210
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-210 1.82e-167

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 465.69  E-value: 1.82e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2074038094 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPT 210
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 4.29e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 252.67  E-value: 4.29e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  10 PLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  90 FFFICIYMHIGRGLYYGSYM--FKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2074038094 168 GFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.52e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 237.67  E-value: 2.52e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  19 FVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYMH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  99 IGRGLYYG--SYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2074038094 177 TRFFAFHFLFPFLIAGASIIHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
19-210 2.08e-74

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 229.68  E-value: 2.08e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  19 FVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYMH 98
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  99 IGRGLYYGSYmfKE----TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKA 174
Cdd:COG1290   107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2074038094 175 TLTRFFAF-HFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:COG1290   185 TLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPP 221
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-210 1.82e-167

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 465.69  E-value: 1.82e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2074038094 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPT 210
CYTB MTH00131
cytochrome b; Provisional
 5-210 2.25e-144

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 407.12  E-value: 2.25e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   5 IRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  85 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2074038094 165 IWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPL 209
CYTB MTH00119
cytochrome b; Provisional
 1-210 2.45e-142

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 401.97  E-value: 2.45e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2074038094 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPL 210
CYTB MTH00100
cytochrome b; Provisional
 4-210 2.41e-141

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 399.40  E-value: 2.41e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   4 PIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  84 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2074038094 164 WIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPS 209
CYTB MTH00191
cytochrome b; Provisional
 5-210 1.48e-137

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 389.27  E-value: 1.48e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   5 IRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  85 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2074038094 165 IWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPL 206
CYTB MTH00156
cytochrome b; Provisional
 12-209 7.82e-132

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 374.50  E-value: 7.82e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  12 IKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  92 FICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2074038094 172 DKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNP 209
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNP 198
CYTB MTH00034
cytochrome b; Validated
 4-210 1.08e-130

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 372.50  E-value: 1.08e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   4 PIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  84 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2074038094 164 WIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPT 209
CYTB MTH00145
cytochrome b; Provisional
 1-209 1.56e-128

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 366.92  E-value: 1.56e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2074038094 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNP 209
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNP 209
CYTB MTH00016
cytochrome b; Validated
 1-209 2.85e-124

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 355.91  E-value: 2.85e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2074038094 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNP 209
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNP 209
CYTB MTH00224
cytochrome b; Provisional
 1-209 1.43e-107

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 313.78  E-value: 1.43e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2074038094 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNP 209
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNP 209
CYTB MTH00022
cytochrome b; Validated
 4-210 2.02e-105

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 308.17  E-value: 2.02e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   4 PIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  84 HANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2074038094 164 WIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPI 208
CYTB MTH00053
cytochrome b; Provisional
 1-210 6.74e-101

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 297.00  E-value: 6.74e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   1 MAHPIRKTHPLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  81 RNIHANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDS 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2074038094 161 LVQWIWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPI 210
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 4.29e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 252.67  E-value: 4.29e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  10 PLIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  90 FFFICIYMHIGRGLYYGSYM--FKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2074038094 168 GFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.52e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 237.67  E-value: 2.52e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  19 FVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYMH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  99 IGRGLYYG--SYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2074038094 177 TRFFAFHFLFPFLIAGASIIHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00033
cytochrome b; Provisional
 5-209 1.01e-76

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 235.22  E-value: 1.01e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094   5 IRKTHpLIKIINGsFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIH 84
Cdd:MTH00033    3 LRKTG-LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  85 ANGASFFFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQW 164
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2074038094 165 IWGGFSVDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNP 209
Cdd:MTH00033  161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEP 205
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
19-210 2.08e-74

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 229.68  E-value: 2.08e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  19 FVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYMH 98
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  99 IGRGLYYGSYmfKE----TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKA 174
Cdd:COG1290   107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2074038094 175 TLTRFFAF-HFLFPFLIAGASIIHLLFLHETGSNNPT 210
Cdd:COG1290   185 TLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPP 221
CYTB MTH00086
cytochrome b; Provisional
 13-209 4.46e-71

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 219.81  E-value: 4.46e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  13 KIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  93 ICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVD 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2074038094 173 KATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNP 209
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSS 197
CYTB MTH00046
cytochrome b; Validated
 11-209 4.28e-54

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 176.33  E-value: 4.28e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  11 LIKIINGSFVDLPTPSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASF 90
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  91 FFICIYMHIGRGLYYGSYMFKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFS 170
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2074038094 171 VDKATLTRFFAFHFLFPFLIAGASIIHLLFLHETGSNNP 209
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNP 199
PRK03735 PRK03735
cytochrome b6; Provisional
 34-178 2.67e-32

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 116.35  E-value: 2.67e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  34 FGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYMHIGRGLYYGSYMFKE- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2074038094 113 -TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKATLTR 178
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTR 190
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-209 9.94e-30

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 108.10  E-value: 9.94e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  89 SFFFICIYMHIGRGLYYGSYMFKE--TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2074038094 167 GGFSVDKATLTRFFAF-HFLFPFLIAGASIIHLLFLHETGSNNP 209
Cdd:pfam13631  81 GGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPP 124
petB CHL00070
cytochrome b6
 25-209 1.10e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 104.03  E-value: 1.10e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094  25 PSNLSSLWNFGSLLGICLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYMHIGRGLY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2074038094 105 YGSymFKE----TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDSLVQWIWGGFSVDKATLTRFF 180
Cdd:CHL00070  107 TGG--FKKprelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFY 184

                         170       180       190
                  ....*....|....*....|....*....|
gi 2074038094 181 AFHFLFPFLIAGASII-HLLFLHETGSNNP 209
Cdd:CHL00070  185 SLHTFVLPLLTAVFMLmHFLMIRKQGISGP 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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