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Conserved domains on  [gi|2070135006|gb|QXP99381|]
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IclR family transcriptional regulator, partial [Salmonella enterica subsp. enterica serovar Enteritidis]

Protein Classification

IclR family transcriptional regulator( domain architecture ID 1000191)

IclR family transcriptional regulator functions as an activator or repressor of genes involved in primary and secondary metabolism, virulence, quorum sensing, and sporulation

Gene Ontology:  GO:0003700|GO:0003677
PubMed:  16597823|16472303

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IclR super family cl34258
DNA-binding transcriptional regulator, IclR family [Transcription];
1-73 5.25e-04

DNA-binding transcriptional regulator, IclR family [Transcription];


The actual alignment was detected with superfamily member COG1414:

Pssm-ID: 441024 [Multi-domain]  Cd Length: 253  Bit Score: 35.95  E-value: 5.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070135006   1 ALPILERHAPK-DIVVALGVLWEDQIIYIYH-STPGSQGSQALAGFRMcPAWQSVTGVALLAAESDE--------AQMQR 70
Cdd:COG1414    86 ARPVLEELAEEtGETVHLAVLDGDEVVYVARvEGPRPVRVSSRVGSRL-PLHATASGKALLAFLPEEeleallarAGLPR 164


                  ...
gi 2070135006  71 FTP 73
Cdd:COG1414   165 FTP 167
 
Name Accession Description Interval E-value
IclR COG1414
DNA-binding transcriptional regulator, IclR family [Transcription];
1-73 5.25e-04

DNA-binding transcriptional regulator, IclR family [Transcription];


Pssm-ID: 441024 [Multi-domain]  Cd Length: 253  Bit Score: 35.95  E-value: 5.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070135006   1 ALPILERHAPK-DIVVALGVLWEDQIIYIYH-STPGSQGSQALAGFRMcPAWQSVTGVALLAAESDE--------AQMQR 70
Cdd:COG1414    86 ARPVLEELAEEtGETVHLAVLDGDEVVYVARvEGPRPVRVSSRVGSRL-PLHATASGKALLAFLPEEeleallarAGLPR 164


                  ...
gi 2070135006  71 FTP 73
Cdd:COG1414   165 FTP 167
 
Name Accession Description Interval E-value
IclR COG1414
DNA-binding transcriptional regulator, IclR family [Transcription];
1-73 5.25e-04

DNA-binding transcriptional regulator, IclR family [Transcription];


Pssm-ID: 441024 [Multi-domain]  Cd Length: 253  Bit Score: 35.95  E-value: 5.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070135006   1 ALPILERHAPK-DIVVALGVLWEDQIIYIYH-STPGSQGSQALAGFRMcPAWQSVTGVALLAAESDE--------AQMQR 70
Cdd:COG1414    86 ARPVLEELAEEtGETVHLAVLDGDEVVYVARvEGPRPVRVSSRVGSRL-PLHATASGKALLAFLPEEeleallarAGLPR 164


                  ...
gi 2070135006  71 FTP 73
Cdd:COG1414   165 FTP 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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