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hypothetical protein GUJ93_ZPchr0013g35662 [Zizania palustris]
ribosomal L7Ae/L30e/S12e/Gadd45 family protein( domain architecture ID 10472466)
ribosomal L7Ae/L30e/S12e/Gadd45 family protein belongs to a family of K-turn-binding proteins that are important in ribosome structure, the site-specific modification of RNA, and spliceosome assembly
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Ribosomal_L7Ae | pfam01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ... |
123-218 | 2.12e-34 | |||
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118. : Pssm-ID: 426153 [Multi-domain] Cd Length: 95 Bit Score: 118.47 E-value: 2.12e-34
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PHA01929 super family | cl26622 | putative scaffolding protein |
54-112 | 1.27e-03 | |||
putative scaffolding protein The actual alignment was detected with superfamily member PHA01929: Pssm-ID: 177328 Cd Length: 306 Bit Score: 39.27 E-value: 1.27e-03
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Name | Accession | Description | Interval | E-value | |||
Ribosomal_L7Ae | pfam01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ... |
123-218 | 2.12e-34 | |||
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118. Pssm-ID: 426153 [Multi-domain] Cd Length: 95 Bit Score: 118.47 E-value: 2.12e-34
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Rpl7Ae | COG1358 | Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ... |
138-222 | 6.02e-10 | |||
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 440969 [Multi-domain] Cd Length: 98 Bit Score: 54.78 E-value: 6.02e-10
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SNU13 | cd21104 | U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ... |
110-220 | 1.13e-05 | |||
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA. Pssm-ID: 411046 Cd Length: 122 Bit Score: 43.47 E-value: 1.13e-05
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PTZ00222 | PTZ00222 | 60S ribosomal protein L7a; Provisional |
138-226 | 1.54e-04 | |||
60S ribosomal protein L7a; Provisional Pssm-ID: 140249 Cd Length: 263 Bit Score: 41.99 E-value: 1.54e-04
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PHA01929 | PHA01929 | putative scaffolding protein |
54-112 | 1.27e-03 | |||
putative scaffolding protein Pssm-ID: 177328 Cd Length: 306 Bit Score: 39.27 E-value: 1.27e-03
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Name | Accession | Description | Interval | E-value | |||
Ribosomal_L7Ae | pfam01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ... |
123-218 | 2.12e-34 | |||
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118. Pssm-ID: 426153 [Multi-domain] Cd Length: 95 Bit Score: 118.47 E-value: 2.12e-34
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Rpl7Ae | COG1358 | Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ... |
138-222 | 6.02e-10 | |||
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 440969 [Multi-domain] Cd Length: 98 Bit Score: 54.78 E-value: 6.02e-10
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SNU13 | cd21104 | U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ... |
110-220 | 1.13e-05 | |||
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA. Pssm-ID: 411046 Cd Length: 122 Bit Score: 43.47 E-value: 1.13e-05
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PTZ00222 | PTZ00222 | 60S ribosomal protein L7a; Provisional |
138-226 | 1.54e-04 | |||
60S ribosomal protein L7a; Provisional Pssm-ID: 140249 Cd Length: 263 Bit Score: 41.99 E-value: 1.54e-04
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PRK13602 | PRK13602 | 50S ribosomal protein L7ae-like protein; |
130-219 | 7.20e-04 | |||
50S ribosomal protein L7ae-like protein; Pssm-ID: 184174 [Multi-domain] Cd Length: 82 Bit Score: 37.45 E-value: 7.20e-04
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PHA01929 | PHA01929 | putative scaffolding protein |
54-112 | 1.27e-03 | |||
putative scaffolding protein Pssm-ID: 177328 Cd Length: 306 Bit Score: 39.27 E-value: 1.27e-03
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Blast search parameters | ||||
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