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Conserved domains on  [gi|2069840134|gb|KAG8095612|]
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hypothetical protein GUJ93_ZPchr0012g21270 [Zizania palustris]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBFB_NFYA super family cl02165
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
98-151 1.99e-09

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


The actual alignment was detected with superfamily member smart00521:

Pssm-ID: 445692 [Multi-domain]  Cd Length: 62  Bit Score: 51.65  E-value: 1.99e-09
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2069840134   98 ADEEPIYVNAKQYHAILRRRKRRkiSGPEDETATIQKRQANM----------RPRGAGGRFIST 151
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQAR--AKLEAQGKLPKERKPYLhesrhlhamrRPRGSGGRFLNT 62
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
98-151 1.99e-09

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 51.65  E-value: 1.99e-09
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2069840134   98 ADEEPIYVNAKQYHAILRRRKRRkiSGPEDETATIQKRQANM----------RPRGAGGRFIST 151
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQAR--AKLEAQGKLPKERKPYLhesrhlhamrRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
101-148 8.20e-08

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 47.18  E-value: 8.20e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2069840134 101 EPIYVNAKQYHAILRRRKRRKISgpEDETATIQKRQANM----------RPRGAGGRF 148
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKL--EAEGKLPKNRKPYLhesrhkhamrRPRGPGGRF 56
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
98-151 1.99e-09

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 51.65  E-value: 1.99e-09
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2069840134   98 ADEEPIYVNAKQYHAILRRRKRRkiSGPEDETATIQKRQANM----------RPRGAGGRFIST 151
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQAR--AKLEAQGKLPKERKPYLhesrhlhamrRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
101-148 8.20e-08

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 47.18  E-value: 8.20e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2069840134 101 EPIYVNAKQYHAILRRRKRRKISgpEDETATIQKRQANM----------RPRGAGGRF 148
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKL--EAEGKLPKNRKPYLhesrhkhamrRPRGPGGRF 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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