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Conserved domains on  [gi|2069840132|gb|KAG8095610|]
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hypothetical protein GUJ93_ZPchr0012g20258 [Zizania palustris]

Protein Classification

DUF3783 domain-containing protein( domain architecture ID 10576934)

DUF3783 domain-containing protein similar to Arabidopsis thaliana vacuolar acid trehalase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3783 pfam12646
Domain of unknown function (DUF3783); This presumed domain is functionally uncharacterized. ...
 228-271 3.73e-08

Domain of unknown function (DUF3783); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 60 amino acids in length.


:

Pssm-ID: 432694  Cd Length: 56  Bit Score: 49.42  E-value: 3.73e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2069840132 228 RICIFFGLTGEEMMMFINAFPETGLEPTAFAALVPNSADKILGE 271
Cdd:pfam12646   1 EMLVFSGFSSEELDKFLKALRKAGIPIPLKAVLTPTNINWTLKE 44
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
59-171 9.84e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14951:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 618  Bit Score: 37.77  E-value: 9.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069840132  59 APPPPPCRRLALARRIRPDSTSPRPCLPTTTSTSPRHLRPADYPLTPPRHLRLALARASSRPPPRPAHTCRSPPPLDRRR 138
Cdd:PRK14951  390 AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE 469

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2069840132 139 HALALTDRAPLLATAGTAVDPAAVGDRHRGWWR 171
Cdd:PRK14951  470 PAVASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
 
Name Accession Description Interval E-value
DUF3783 pfam12646
Domain of unknown function (DUF3783); This presumed domain is functionally uncharacterized. ...
 228-271 3.73e-08

Domain of unknown function (DUF3783); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 60 amino acids in length.


Pssm-ID: 432694  Cd Length: 56  Bit Score: 49.42  E-value: 3.73e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2069840132 228 RICIFFGLTGEEMMMFINAFPETGLEPTAFAALVPNSADKILGE 271
Cdd:pfam12646   1 EMLVFSGFSSEELDKFLKALRKAGIPIPLKAVLTPTNINWTLKE 44
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 59-171 9.84e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 37.77  E-value: 9.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069840132  59 APPPPPCRRLALARRIRPDSTSPRPCLPTTTSTSPRHLRPADYPLTPPRHLRLALARASSRPPPRPAHTCRSPPPLDRRR 138
Cdd:PRK14951  390 AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE 469

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2069840132 139 HALALTDRAPLLATAGTAVDPAAVGDRHRGWWR 171
Cdd:PRK14951  470 PAVASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
 
Name Accession Description Interval E-value
DUF3783 pfam12646
Domain of unknown function (DUF3783); This presumed domain is functionally uncharacterized. ...
 228-271 3.73e-08

Domain of unknown function (DUF3783); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 60 amino acids in length.


Pssm-ID: 432694  Cd Length: 56  Bit Score: 49.42  E-value: 3.73e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2069840132 228 RICIFFGLTGEEMMMFINAFPETGLEPTAFAALVPNSADKILGE 271
Cdd:pfam12646   1 EMLVFSGFSSEELDKFLKALRKAGIPIPLKAVLTPTNINWTLKE 44
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 59-171 9.84e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 37.77  E-value: 9.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069840132  59 APPPPPCRRLALARRIRPDSTSPRPCLPTTTSTSPRHLRPADYPLTPPRHLRLALARASSRPPPRPAHTCRSPPPLDRRR 138
Cdd:PRK14951  390 AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE 469

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2069840132 139 HALALTDRAPLLATAGTAVDPAAVGDRHRGWWR 171
Cdd:PRK14951  470 PAVASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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