|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
81-631 |
3.67e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 3.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 81 LQRDAE------EQEEELDAVSKNLSVL-LREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVAVANQLTALKETID 153
Cdd:COG1196 205 LERQAEkaeryrELKEELKELEAELLLLkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 154 SLAKDKRLSKLHTASLRRQQELLIEKIemfdhtnhslRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFT 233
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERR----------RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 234 NKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTV- 312
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELe 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 313 --------KQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSdwcLRHSKEATAKGQL 384
Cdd:COG1196 435 eeeeeeeeALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE---AEADYEGFLEGVK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 385 EEEVSALKLQVAELSSQLRSAEDKSRTEREE-LRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIK 463
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 464 KHENLVEKYKKKVQQARLESEECCLKLEATQKE----------AREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAE 533
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGrtlvaarleaALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 534 QQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTL 613
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570
....*....|....*...
gi 2069483777 614 IAKEATIRSVQQQLEEKV 631
Cdd:COG1196 752 ALEELPEPPDLEELEREL 769
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
335-681 |
1.26e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 335 LTQQAERAEEsARQLAAKLQEKETQLAqalstssdwcLRHSKEATAK-GQLEEEVSALKLQVAELSSQLRSAEDKSRTER 413
Cdd:COG1196 205 LERQAEKAER-YRELKEELKELEAELL----------LLKLRELEAElEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 414 EELrdqfqhvsaenastkldnQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEEcclkLEAT 493
Cdd:COG1196 274 LEL------------------EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE----LEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 494 QKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEM 573
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 574 FQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVcecnVLSRKLQHTLDDAQRQVD 653
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL----EEAALLEAALAELLEELA 487
|
330 340
....*....|....*....|....*...
gi 2069483777 654 DSMQRVLAKERASQSKALDLQSQLSRAK 681
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALL 515
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-544 |
2.80e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 2.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 169 LRRQQEL--LIEKIEMFDHTNHSLRELLREwSEHERESLvwSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHL 246
Cdd:TIGR02168 673 LERRREIeeLEEKIEELEEKIAELEKALAE-LRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 247 DFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQ-QQRKEEDQEHD 325
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeAANLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 326 QQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEataKGQLEEEVSALKLQVAELSSQLRSA 405
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE---RASLEEALALLRSELEELSEELREL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 406 EDKsrteREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRglqSEARRLKSTIKKHENLVEKYKKKVQQaRLESee 485
Cdd:TIGR02168 907 ESK----RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS---EEYSLTLEEAEALENKIEDDEEEARR-RLKR-- 976
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2069483777 486 cclkLEATQKEAREVTVSLEREKDQVKrellDRLRGLETLPDKLRRAEQQLRDVQEEAD 544
Cdd:TIGR02168 977 ----LENKIKELGPVNLAAIEEYEELK----ERYDFLTAQKEDLTEAKETLEEAIEEID 1027
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
329-687 |
8.12e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 8.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 329 REALALLTQQAERAEESARQLAAKLQEKETQLAQalstssdwclrhskeatakgqLEEEVSALKLQVAELSSQLRSAedk 408
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEE---------------------LEEELEQLRKELEELSRQISAL--- 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 409 sRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLEseeccl 488
Cdd:TIGR02168 732 -RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA------ 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 489 kLEATQKEAREvtvslerekdqVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADvhkrrnvEHSATLSEVRHKVEQQG 568
Cdd:TIGR02168 805 -LDELRAELTL-----------LNEEAANLRERLESLERRIAATERRLEDLEEQIE-------ELSEDIESLAAEIEELE 865
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 569 SQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTLDDA 648
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
330 340 350
....*....|....*....|....*....|....*....
gi 2069483777 649 QRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQL 687
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
383-650 |
5.29e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 5.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 383 QLEEEVSALKLQVAELS-SQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKST 461
Cdd:TIGR02168 224 ELELALLVLRLEELREElEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 462 IKKHEnlveKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQE 541
Cdd:TIGR02168 304 KQILR----ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 542 EADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMsdTLIAKEATIR 621
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE--ELEELQEELE 457
|
250 260
....*....|....*....|....*....
gi 2069483777 622 SVQQQLEEKVCECNVLSRKLQHTLDDAQR 650
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQ 486
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
192-629 |
7.95e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 7.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 192 ELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLE 271
Cdd:PRK02224 276 ELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 272 SQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDReaLALLTQQAERAEESARQLAA 351
Cdd:PRK02224 356 ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF--LEELREERDELREREAELEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 352 KLQEKETQLA---------------QALSTSSDWCLRHSKEAtAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTER--E 414
Cdd:PRK02224 434 TLRTARERVEeaealleagkcpecgQPVEGSPHVETIEEDRE-RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDriE 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 415 ELRDQfqhvsAENASTKLDNQRLTVQltSSEEKLRGLQSEArrlkstiKKHENLVEKYKKKVQQARLESEECclkleatq 494
Cdd:PRK02224 513 RLEER-----REDLEELIAERRETIE--EKRERAEELRERA-------AELEAEAEEKREAAAEAEEEAEEA-------- 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 495 keaREVTVSLEREKDQVKRElLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEmf 574
Cdd:PRK02224 571 ---REEVAELNSKLAELKER-IESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD-- 644
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2069483777 575 QQRNTLLQEENNVHKEKMYNLERKLEdfkvENKEMSDTLIAKEATIRSVQQQLEE 629
Cdd:PRK02224 645 EARIEEAREDKERAEEYLEQVEEKLD----ELREERDDLQAEIGAVENELEELEE 695
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
167-721 |
8.32e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 8.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 167 ASLRRQQELLIEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLlakftNKEKEafklakHL 246
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL-----EQQKQ------IL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 247 DFEKENVKTTEELskiLESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQqqRKEEDQEHDQ 326
Cdd:TIGR02168 308 RERLANLERQLEE---LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES--RLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 327 QDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDwcLRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAE 406
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 407 DKSRTEREELRDQFQHVSAENASTKLDNQRLTVqLTSSEEKLRGLQSEARRL---KSTIKKHENLV-------EKYKKKV 476
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKALlknQSGLSGILGVLselisvdEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 477 --------QQARLESEECCLKLEATQKEAR-------EVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDV-- 539
Cdd:TIGR02168 540 eaalggrlQAVVVENLNAAKKAIAFLKQNElgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAls 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 540 -----------QEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNvhkeKMYNLERKLEDFKVENKE 608
Cdd:TIGR02168 620 yllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRR----EIEELEEKIEELEEKIAE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 609 MSDTLIAKEATIRSVQQQLEEKVCECNVLSRKL-------------QHTLDDAQRQVDDSMQRVLAKERASQSKALDLQS 675
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQIsalrkdlarleaeVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 2069483777 676 QLSRAKSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATNRSLQN 721
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
86-711 |
1.51e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 86 EEQEEELDAVSKNLSVLLREQESNRRSKKADagaegrKVDVLLRALVEAEIDGVAVANQLTALKETIDSLAKDK------ 159
Cdd:pfam15921 244 EDQLEALKSESQNKIELLLQQHQDRIEQLIS------EHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmymr 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 160 RLSKLHTASLRRQQELLIEKIEMFDHTNHSLRELL---REWSEHERESLVWSEQKDALKIRLadseaenTRLLAKFTNKE 236
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVlanSELTEARTERDQFSQESGNLDDQL-------QKLLADLHKRE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 237 KEafklakhLDFEKENVKTTEELSKILESTRDHLesqlsRAETEKRhlNAQIQRMQQSydqqykeLQALQKELQtvKQQQ 316
Cdd:pfam15921 391 KE-------LSLEKEQNKRLWDRDTGNSITIDHL-----RRELDDR--NMEVQRLEAL-------LKAMKSECQ--GQME 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 317 RKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDwclrhskeatAKGQLEEEVSALKLQVA 396
Cdd:pfam15921 448 RQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSD----------LTASLQEKERAIEATNA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 397 ELsSQLRSAEDKSRTEREELRDQFQHVsaENASTKLDNQRLtvQLTSSEEKLRGLQSEARRLKSTIKKHEN-----LVEK 471
Cdd:pfam15921 518 EI-TKLRSRVDLKLQELQHLKNEGDHL--RNVQTECEALKL--QMAEKDKVIEILRQQIENMTQLVGQHGRtagamQVEK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 472 --YKKKVQQARLESEECCL---KLEATQKEAREVTVSLEREKDQVKRELLDRLRGL-------ETLPDKLRRAEQQLRDV 539
Cdd:pfam15921 593 aqLEKEINDRRLELQEFKIlkdKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVkdikqerDQLLNEVKTSRNELNSL 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 540 QEEADVHKR--RNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEE-NNVHKEKMynlerkledfkveNKEMSDTLIAK 616
Cdd:pfam15921 673 SEDYEVLKRnfRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgSDGHAMKV-------------AMGMQKQITAK 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 617 EATIRSVQ---QQLEEKVCECNvlsrKLQHTLDDAQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQE 693
Cdd:pfam15921 740 RGQIDALQskiQFLEEAMTNAN----KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDK 815
|
650
....*....|....*...
gi 2069483777 694 MERRFqSQLQNLKDRLEQ 711
Cdd:pfam15921 816 ASLQF-AECQDIIQRQEQ 832
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
229-556 |
2.88e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 229 LAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDH-LESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQK 307
Cdd:TIGR02169 186 IERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 308 ELQTVKQQQRKEEDQEHDQQDREALALLTQ---------QAERA----EESARQLAAKLQEKETQLAQALSTSSDWCLRH 374
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLGEEEQLRVKEKigeleaeiaSLERSiaekERELEDAEERLAKLEAEIDKLLAEIEELEREI 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 375 SKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRDqfqhvsaenASTKLDnqRLTVQLTSSEEKLRGLQSE 454
Cdd:TIGR02169 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD---------YREKLE--KLKREINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 455 ARRLKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEARevtvSLEREKDQVKRELLDRLRGLETLPDKLRRAEQ 534
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE----QLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330 340
....*....|....*....|..
gi 2069483777 535 QLRDVQEEADVHKRRNVEHSAT 556
Cdd:TIGR02169 491 ELAEAEAQARASEERVRGGRAV 512
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
65-572 |
4.14e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 4.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 65 RRDRSRVQHQSEGGTGLQRDAEEQEEELDAVSKNLSVLLREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVAVANQ 144
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 145 LTALKETIDSLAKDKRLSKLHTASLRRQQELLIEKIEmfdhtnhslrELLREWSEHERESLVWSEQKDALKIRLADSEAE 224
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE----------ALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 225 NTRLLAKFTNKEKEAFKLakhldfEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQA 304
Cdd:COG1196 444 LEEAAEEEAELEEEEEAL------LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 305 LQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQL 384
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 385 EEEVSALKLQVAELSSQLRSAEDksrTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKK 464
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGD---TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 465 HENLVEKYKKKVQQARLESEecclkLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEAD 544
Cdd:COG1196 675 LEAEAELEELAERLAEEELE-----LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
490 500
....*....|....*....|....*...
gi 2069483777 545 VHKRRNVEHSATLSEVRHKVEQQGSQLE 572
Cdd:COG1196 750 EEALEELPEPPDLEELERELERLEREIE 777
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
81-695 |
5.51e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 5.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 81 LQRDAEEQEEELDAVSKNLsvllREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVAVANQLTALKETIDSLAKDKR 160
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKA----EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 161 LSKLHTASLRRQQELLIEKIEmfdhtNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAF 240
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAA-----KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 241 KlAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEE 320
Cdd:PTZ00121 1471 K-ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 321 DQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQalstssdwclrhsKEATAKGQLEEEVSALKLQVAELSS 400
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE-------------ARIEEVMKLYEEEKKMKAEEAKKAE 1616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 401 QLRSAEDKSRTEREELRDQFQHVSAENASTKldnqrltvqltsSEEKLRGLQSEARRLKSTIKKHEnlvEKYKKKVQQAR 480
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKK------------KAEELKKAEEENKIKAAEEAKKA---EEDKKKAEEAK 1681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 481 LESEECCLKLEATQKEAREvtvslEREKDQVKRELLDRLRGLEtlpdKLRRAEQQLRDVQEEAdvhkRRNVEHSATLSEV 560
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEE-----AKKAEELKKKEAEEKKKAE----ELKKAEEENKIKAEEA----KKEAEEDKKKAEE 1748
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 561 RHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTliakeATIRSVQQQLEEKVCECNVLSRK 640
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI-----KDIFDNFANIIEGGKEGNLVIND 1823
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 2069483777 641 LQHTLDDAQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEME 695
Cdd:PTZ00121 1824 SKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKE 1878
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
84-723 |
8.87e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 8.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 84 DAEEQEEELDAVSKNLSVLLREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVAVANQLTALKET------------ 151
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAArkaeeerkaeea 1217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 152 --------IDSLAKDKRLSKLHTASLRRQQELLIEKIEMFDHTN--HSLRELLREWSEHERESlvwSEQKDALKIRLADS 221
Cdd:PTZ00121 1218 rkaedakkAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARmaHFARRQAAIKAEEARKA---DELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 222 --EAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRM---QQSYD 296
Cdd:PTZ00121 1295 akKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeaaEKKKE 1374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 297 QQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSK 376
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 377 EA----TAKGQLEEEVSALKLQvaelssqlRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGlq 452
Cdd:PTZ00121 1455 EAkkaeEAKKKAEEAKKADEAK--------KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA-- 1524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 453 SEARRLKSTIKKHENLVEKYKKKVQQAR----LESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDK 528
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKkaeeLKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 529 LRRAEQQLRDVQEEadvhkRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEdfkvENKE 608
Cdd:PTZ00121 1605 KKMKAEEAKKAEEA-----KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE----EDKK 1675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 609 MSDTLIAKEATIRSVQQQLEEKVCEcnvlSRKLQHTLDDAQRQVDDSMQrVLAKERASQSKALDLQSQLSRAKSEMSQLQ 688
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEE----AKKAEELKKKEAEEKKKAEE-LKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
650 660 670
....*....|....*....|....*....|....*
gi 2069483777 689 RSKQEmerrfQSQLQNLKDRLEQSDATNRSLQNYV 723
Cdd:PTZ00121 1751 KDEEE-----KKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
444-706 |
9.64e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 9.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 444 SEEKLRGLQSEARRLKSTIKKHENLVEKYKK-KVQQARLESEECCLKLEATQKEAREVT---VSLEREKDQVKRELLDRL 519
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEALERQKEAIErqlASLEEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 520 RGLETLPDKLRRAEQQLRDVQEEADVH-KRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERK 598
Cdd:TIGR02169 265 KRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 599 LEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKL---QHTLDDAQRQVDDS---MQRVLAKERASQSKALD 672
Cdd:TIGR02169 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELkdyREKLEKLKREINELkreLDRLQEELQRLSEELAD 424
|
250 260 270
....*....|....*....|....*....|....
gi 2069483777 673 LQSQLSRAKSEMSQLQRSKQEMERRFQSQLQNLK 706
Cdd:TIGR02169 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
470-714 |
1.17e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 470 EKYKK-KVQQARLESEECCLKLEATQKEAREvtvsLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKR 548
Cdd:COG1196 213 ERYRElKEELKELEAELLLLKLRELEAELEE----LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 549 RNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLE 628
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 629 EkvcecnvlsrkLQHTLDDAQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEMERRFQSQLQNLKDR 708
Cdd:COG1196 369 E-----------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
....*.
gi 2069483777 709 LEQSDA 714
Cdd:COG1196 438 EEEEEA 443
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
267-465 |
1.28e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 267 RDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQkelqtvKQQQRKEEDQEHDQQDREaLALLTQQAERAEESA 346
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQ------RLAEYSWDEIDVASAERE-IAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 347 RQLAAkLQEKETQLAQALSTSSDwclRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTE-REELRDQFQHVSA 425
Cdd:COG4913 685 DDLAA-LEEQLEELEAELEELEE---ELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElRALLEERFAAALG 760
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2069483777 426 ENASTKLDnQRLTVQLTSSEEKLRGLQSEARRLKSTIKKH 465
Cdd:COG4913 761 DAVERELR-ENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
81-718 |
1.45e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 81 LQRDAE------EQEEELDAVSKNLSVL-LREQESNRRSKKADAGAEGRKVDVLLRALVEAEidgvavanqlTALKETID 153
Cdd:TIGR02168 205 LERQAEkaerykELKAELRELELALLVLrLEELREELEELQEELKEAEEELEELTAELQELE----------EKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 154 SLAKDKRLSKLHTASLRRQQELLIEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFT 233
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 234 NKEKEAfklakhldfeKENVKTTEELSKILESTRDHLESQ---LSRAETEKRHLNAQIQRMQqsydqqyKELQALQKELQ 310
Cdd:TIGR02168 355 SLEAEL----------EELEAELEELESRLEELEEQLETLrskVAQLELQIASLNNEIERLE-------ARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 311 TVKQQQRKEEDQEHDQQDRE-----------------ALALLTQQAERAEESARQLAAKLQEKETQLAQA---LSTSSDW 370
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKElqaeleeleeeleelqeELERLEEALEELREELEEAEQALDAAERELAQLqarLDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 371 CLRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDN---------------- 434
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAiaflkqnelgrvtflp 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 435 ------QRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLV-----------------EKYKKKVQQARL---------- 481
Cdd:TIGR02168 578 ldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALsyllggvlvvddldnalELAKKLRPGYRIvtldgdlvrp 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 482 ------ESEECCLKLEATQKEAREvtvsLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSA 555
Cdd:TIGR02168 658 ggvitgGSAKTNSSILERRREIEE----LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 556 TLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKL---EDFKVENKEMSDTLIAKEATIRSVQQQLEEKVC 632
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELaeaEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 633 ECNVLSRKLQHTLDDAQRQVDDSMQRVlakERASQSKAlDLQSQLSRAKSEMSQLQRSKQEMERRFQSqLQNLKDRLEQS 712
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRL---EDLEEQIE-ELSEDIESLAAEIEELEELIEELESELEA-LLNERASLEEA 888
|
....*.
gi 2069483777 713 DATNRS 718
Cdd:TIGR02168 889 LALLRS 894
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
469-721 |
1.75e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 469 VEKYKKKVQQARL---ESEECCLKLEATQKEAREVTVSLEREKDQVKR--ELLDRLRGLE--TLPDKLRRAEQQLRDVQE 541
Cdd:TIGR02168 167 ISKYKERRKETERkleRTRENLDRLEDILNELERQLKSLERQAEKAERykELKAELRELElaLLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 542 EADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIR 621
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 622 SVQQQLEEKVCECNVLSRKLQHTLDDAQRQvDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSkqemERRFQSQ 701
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESL-EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ----IASLNNE 401
|
250 260
....*....|....*....|
gi 2069483777 702 LQNLKDRLEQSDATNRSLQN 721
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQ 421
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
300-471 |
2.20e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 300 KELQALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDwcLRHSKEAT 379
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD--LAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 380 AkgQLEEEVSALKLQVAELSSQLRSAEDK---SRTEREELRDQFQHVSAENAS---TKLDNQRLTVQLTSSEEKLR-GLQ 452
Cdd:COG4913 695 E--ELEAELEELEEELDELKGEIGRLEKEleqAEEELDELQDRLEAAEDLARLelrALLEERFAAALGDAVERELReNLE 772
|
170
....*....|....*....
gi 2069483777 453 SEARRLKSTIKKHENLVEK 471
Cdd:COG4913 773 ERIDALRARLNRAEEELER 791
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
383-710 |
2.55e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 383 QLEEEVSALKLQVAELSSQLRSAEdKSRTEREELRDqfqhvsaenastkLDNQRLTVQLTSSEEKLRGLQSEARRLKSTI 462
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQAEKAE-RYKELKAELRE-------------LELALLVLRLEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 463 KKHENLVEKYKKKVQQARLESEEcclkleatqkearevtvsLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEE 542
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSE------------------LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 543 ADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRS 622
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 623 VQQQLEEKVCECNVLSRKLQHtLDDAQRQVDDSMQRVLAKERASQSKALD-----LQSQLSRAKSEMSQLQRSKQEMERR 697
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRER-LQQEIEELLKKLEEAELKELQAELEELEeeleeLQEELERLEEALEELREELEEAEQA 476
|
330
....*....|....*.
gi 2069483777 698 FQS---QLQNLKDRLE 710
Cdd:TIGR02168 477 LDAaerELAQLQARLD 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
446-720 |
2.97e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 446 EKLRGLQSEARRLKST-----IKKHENLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKrELLDRLR 520
Cdd:COG1196 213 ERYRELKEELKELEAEllllkLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 521 GLETlpdKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLE 600
Cdd:COG1196 292 ELLA---ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 601 DFKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTLDDAQRQvDDSMQRVLAKERASQSKALDLQSQLSRA 680
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL-EEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2069483777 681 KSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATNRSLQ 720
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
344-567 |
4.13e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 344 ESARQLAAKLQEKETQLAQALSTssdwCLRHSKEATAKGQLEEEVSALKLQVAELSSQL-RSAEDKSRTEREELRDQFQH 422
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIREL----AERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 423 VSAENASTKLDNQRLTVQLTSSE-EKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEAREVT 501
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2069483777 502 VSLEREKDQVkRELLDRLRgletlpDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQ 567
Cdd:COG4913 394 EALEEELEAL-EEALAEAE------AALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
267-484 |
4.80e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 267 RDHLESQLSRAETEKRHLNAQIQRMQQsydqqykELQALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESA 346
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRK-------ELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 347 RQLAAKLQEKETQLAQALSTSSDwclrhSKEATAKGQLEEEVSALKLQVAELSS-------QLRSAEDKSRTEREELRDQ 419
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPE-----LLQSPVIQQLRAQLAELEAELAELSArytpnhpDVIALRAQIAALRAQLQQE 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2069483777 420 FQHVSAENASTKLDNQRLTVQLTSSEEKLRG-------LQSEARRLKSTIKKHENLVEKYKKKVQQARLESE 484
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEArlaelpeLEAELRRLEREVEVARELYESLLQRLEEARLAEA 382
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
97-398 |
6.18e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 6.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 97 KNLSVLLREQESN-RRSKKADAGAEGR------KVDVLLRALVEAEIDGVAVANQLTALKETIDSLAKDKRLSKLHTASL 169
Cdd:TIGR02168 680 EELEEKIEELEEKiAELEKALAELRKEleeleeELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 170 RRQQELLIEKIEmfdHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFE 249
Cdd:TIGR02168 760 EAEIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 250 KENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHD-QQD 328
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSElRRE 916
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2069483777 329 REALALLTQQAERAEESARQLAAKLQEketQLAQALSTSSDWCLRHSKEATAKGQ-LEEEVSALKLQVAEL 398
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEAEALENKIEDDEEeARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
168-514 |
7.96e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 7.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 168 SLRRQQELLIEKIEMFDHTNHSLRELL----REWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLA 243
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELsdasRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 244 KHL-DFEKENVKTTEELSKILESTRDH----LESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRK 318
Cdd:TIGR02169 765 ARIeELEEDLHKLEEALNDLEARLSHSripeIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 319 EEDQEHDQQDREALalltqqaeraeesarqLAAKLQEKETQLAqalstssdwclrhsKEATAKGQLEEEVSALKLQVAEL 398
Cdd:TIGR02169 845 LKEQIKSIEKEIEN----------------LNGKKEELEEELE--------------ELEAALRDLESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 399 SSQLRSAEDKSRT-----EREELRDQFQHVSAENASTKL----DNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHE--- 466
Cdd:TIGR02169 895 EAQLRELERKIEEleaqiEKKRKRLSELKAKLEALEEELseieDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpvn 974
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2069483777 467 NLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKRE 514
Cdd:TIGR02169 975 MLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
83-416 |
9.68e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 83 RDAEEQEEELDAVSKNLSV--LLREQESNRRSKKADAGAEGRKVDVLLRALVEAEidGVAVANQLTALKETIDSLAKDkr 160
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERldLIIDEKRQQLERLRREREKAERYQALLKEKREYE--GYELLKEKEALERQKEAIERQ-- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 161 lsklhTASLRRQQELLIEKIEMFDHTNHSLRELLREwsEHERESLVWSEQKDALKIRLADSEAENTRLlakftnKEKEAF 240
Cdd:TIGR02169 246 -----LASLEEELEKLTEEISELEKRLEEIEQLLEE--LNKKIKDLGEEEQLRVKEKIGELEAEIASL------ERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 241 KLAKHLDFEKENVKTTEELSKILESTRDhLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQ-----Q 315
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEE-LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDelkdyR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 316 QRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVSALKLQV 395
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340
....*....|....*....|.
gi 2069483777 396 AELSSQLRSAEDKSRTEREEL 416
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQREL 492
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
329-709 |
1.10e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.18 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 329 REALALLTQQAERAEESARQLAaKLQEKETQLAQALSTSSDWcLRHSKEATakgQLEEEVSALKLQVAELSSQLRSAEDk 408
Cdd:COG3096 295 FGARRQLAEEQYRLVEMARELE-ELSARESDLEQDYQAASDH-LNLVQTAL---RQQEKIERYQEDLEELTERLEEQEE- 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 409 srtEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKL-----RGLQ--------SEARRL----KSTIKKHENLVEK 471
Cdd:COG3096 369 ---VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALdvqqtRAIQyqqavqalEKARALcglpDLTPENAEDYLAA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 472 YKKKVQQA---RLESEEcclKL--------------EATQKEAREVTVSlerEKDQVKRELLDRLRGLETLPDKLRRAEQ 534
Cdd:COG3096 446 FRAKEQQAteeVLELEQ---KLsvadaarrqfekayELVCKIAGEVERS---QAWQTARELLRRYRSQQALAQRLQQLRA 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 535 QLRDVqeEADVHKRRNVEHSATLSEVRHKVE-QQGSQLEMFQQRNTLLQEENNVHK----EKMYNLERKLEDFKVENKEm 609
Cdd:COG3096 520 QLAEL--EQRLRQQQNAERLLEEFCQRIGQQlDAAEELEELLAELEAQLEELEEQAaeavEQRSELRQQLEQLRARIKE- 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 610 sdtLIAKEATIRSVQQQLEEkvcecnvLSRKLQHTLDDAQrQVDDSMQRVLAKERAsqskaldlqsqlsrAKSEMSQLQR 689
Cdd:COG3096 597 ---LAARAPAWLAAQDALER-------LREQSGEALADSQ-EVTAAMQQLLERERE--------------ATVERDELAA 651
|
410 420 430
....*....|....*....|....*....|
gi 2069483777 690 SKQEMERR----------FQSQLQNLKDRL 709
Cdd:COG3096 652 RKQALESQierlsqpggaEDPRLLALAERL 681
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
292-543 |
1.23e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 292 QQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDreALALLTQQAERAEESARQLAAKLQEKETQLAQalstssdwc 371
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLK--QLAALERRIAALARRIRALEQELAALEAELAE--------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 372 lrhskeatAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRdqfqhVSAENASTKLDN----QRLTVQLTSSEEK 447
Cdd:COG4942 88 --------LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALL-----LSPEDFLDAVRRlqylKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 448 LRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLEseecclkLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPD 527
Cdd:COG4942 155 LRADLAELAALRAELEAERAELEALLAELEEERAA-------LEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
250
....*....|....*.
gi 2069483777 528 KLRRAEQQLRDVQEEA 543
Cdd:COG4942 228 LIARLEAEAAAAAERT 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
270-482 |
3.44e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 270 LESQLSRAETEKRHLnAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQ---QDREALALLTQQAERAEESA 346
Cdd:COG4913 240 AHEALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAeleELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 347 RQLAAKLQEKETQLAQAlstssdwclrhskEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRT-------EREELRDQ 419
Cdd:COG4913 319 DALREELDELEAQIRGN-------------GGDRLEQLEREIERLERELEERERRRARLEALLAAlglplpaSAEEFAAL 385
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2069483777 420 FQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLE 482
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
177-710 |
3.63e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 177 IEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTT 256
Cdd:PRK03918 154 ILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 257 EELSKILEStrdhLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALLT 336
Cdd:PRK03918 234 EELKEEIEE----LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 337 QQAERAEESARQLAAKLQEKETQLaqalstssdwclrhSKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSR--TERE 414
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKEL--------------EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAkkEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 415 ELRDQFQHVSAENASTKLDN-----QRLTVQLTSSEEKLRGLQSEARRLKSTIKK-------------------HENLVE 470
Cdd:PRK03918 376 RLKKRLTGLTPEKLEKELEElekakEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcgrelteehRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 471 KYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKdqvkrelldRLRGLETLPDKLRRAEQQLRDVQEE---ADVHK 547
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKES---------ELIKLKELAEQLKELEEKLKKYNLEeleKKAEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 548 RRNV-EHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIA-------KEAT 619
Cdd:PRK03918 527 YEKLkEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKelepfynEYLE 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 620 IRSVQQQLEEKVCECNVLSRKLQHTLDDAQR----------QVDDSMQRVLAKE-RASQSKALDLQSQLSRAKSEMSQLQ 688
Cdd:PRK03918 607 LKDAEKELEREEKELKKLEEELDKAFEELAEtekrleelrkELEELEKKYSEEEyEELREEYLELSRELAGLRAELEELE 686
|
570 580
....*....|....*....|..
gi 2069483777 689 RSKQEMERrfqsQLQNLKDRLE 710
Cdd:PRK03918 687 KRREEIKK----TLEKLKEELE 704
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
250-483 |
6.17e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 6.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 250 KENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEED-------- 321
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEelaellra 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 322 -QEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQalstssdwcLRHSKE--ATAKGQLEEEVSALKLQVAEL 398
Cdd:COG4942 113 lYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEE---------LRADLAelAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 399 SSQLRSAEdKSRTEREELRdqfqhvsaenastkldnQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQ 478
Cdd:COG4942 184 EEERAALE-ALKAERQKLL-----------------ARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
....*
gi 2069483777 479 ARLES 483
Cdd:COG4942 246 AGFAA 250
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
280-543 |
1.14e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 280 EKRHLNAQIQRMQQsydqQYKELQALQKELQTVKQQqrkeedqehdqqdREALALLTQQAERAEESARQLAAKLQEKETq 359
Cdd:COG4913 219 EEPDTFEAADALVE----HFDDLERAHEALEDAREQ-------------IELLEPIRELAERYAAARERLAELEYLRAA- 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 360 laqalstssdwcLRHSKEATAKGQLEEEVSALKLQVAELS---SQLRSAEDKSRTEREELRDQ-FQHVSAENASTKLDNQ 435
Cdd:COG4913 281 ------------LRLWFAQRRLELLEAELEELRAELARLEaelERLEARLDALREELDELEAQiRGNGGDRLEQLEREIE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 436 RLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEEcclKLEATQKEAREVTVSLEREKDQvKREL 515
Cdd:COG4913 349 RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE---ELEALEEALAEAEAALRDLRRE-LREL 424
|
250 260
....*....|....*....|....*...
gi 2069483777 516 LDRLRGLETLPDKLRRAEQQLRDVQEEA 543
Cdd:COG4913 425 EAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
239-568 |
1.90e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 45.21 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 239 AFKLAKHLD---FEKENVKTTEELSKILESTRDHLE--SQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVK 313
Cdd:NF012221 1517 EFKGTGHNDglgYILDNVVATSESSQQADAVSKHAKqdDAAQNALADKERAEADRQRLEQEKQQQLAAISGSQSQLESTD 1596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 314 QQqrKEEDQEHDQqdREALalltqqaeraEESARQLAAKLqekeTQLAQALSTSSDwclrhskEATAKGQLEeevsalkl 393
Cdd:NF012221 1597 QN--ALETNGQAQ--RDAI----------LEESRAVTKEL----TTLAQGLDALDS-------QATYAGESG-------- 1643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 394 qvaelssqlrsaedksrterEELRDQFQHVSAENASTKLDNQRLTV--QLTSSEEKLRGLQSearRLKSTIKKHENLVEK 471
Cdd:NF012221 1644 --------------------DQWRNPFAGGLLDRVQEQLDDAKKISgkQLADAKQRHVDNQQ---KVKDAVAKSEAGVAQ 1700
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 472 YKKKVQQARLESEECCLKLEATQKEArevtvsLEREKDQVKRELLD-------RLRG---LETLPDKLRRAEQQLRDVQE 541
Cdd:NF012221 1701 GEQNQANAEQDIDDAKADAEKRKDDA------LAKQNEAQQAESDAnaaandaQSRGeqdASAAENKANQAQADAKGAKQ 1774
|
330 340
....*....|....*....|....*..
gi 2069483777 542 EADVHKRRNVEHSATLSEVRHKVEQQG 568
Cdd:NF012221 1775 DESDKPNRQGAAGSGLSGKAYSVEGVA 1801
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
169-572 |
2.39e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 169 LRRQQELLIEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAEN-----TRLLAKFTNKEKEAFKLA 243
Cdd:COG4717 83 AEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAelaelPERLEELEERLEELRELE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 244 KHLDF-EKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQ 322
Cdd:COG4717 163 EELEElEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 323 EHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQA--LSTSSDWCLRHSKEATAKGQLEEEVSALK-LQVAELS 399
Cdd:COG4717 243 ERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLglLALLFLLLAREKASLGKEAEELQALPALEeLEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 400 SQLRSAEDKSRTEREELRDQFQHV-SAENASTKLDNQRLTVQLTSSEEKLRGLQSEArrlksTIKKHENLVEKYKKKVQQ 478
Cdd:COG4717 323 ELLAALGLPPDLSPEELLELLDRIeELQELLREAEELEEELQLEELEQEIAALLAEA-----GVEDEEELRAALEQAEEY 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 479 ARLESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQeeadvHKRRNVEHSATLS 558
Cdd:COG4717 398 QELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELE-----AELEQLEEDGELA 472
|
410
....*....|....
gi 2069483777 559 EVRHKVEQQGSQLE 572
Cdd:COG4717 473 ELLQELEELKAELR 486
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
264-651 |
2.69e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 264 ESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKElqtvkqqqrkEEDQEHDQQDREALALLTQQAERAE 343
Cdd:pfam15921 495 ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE----------GDHLRNVQTECEALKLQMAEKDKVI 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 344 ESARQLAaklqEKETQLAQalstssdwclRHSKEATA----KGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRD- 418
Cdd:pfam15921 565 EILRQQI----ENMTQLVG----------QHGRTAGAmqveKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDl 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 419 QFQHVSAENAST---------KLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVE------KYKKKVQQARLES 483
Cdd:pfam15921 631 ELEKVKLVNAGSerlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEtttnklKMQLKSAQSELEQ 710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 484 EECCLK-LEATQKEAREVTVSLEREKdQVKRELLDRLRgletlpDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRH 562
Cdd:pfam15921 711 TRNTLKsMEGSDGHAMKVAMGMQKQI-TAKRGQIDALQ------SKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVAT 783
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 563 KVEQQGSQLEMFQQRNTLLqeennvhKEKMYNLERKLEDFKVENKEMSDTliakeatirsVQQQLEEKVcecnvlSRKLQ 642
Cdd:pfam15921 784 EKNKMAGELEVLRSQERRL-------KEKVANMEVALDKASLQFAECQDI----------IQRQEQESV------RLKLQ 840
|
....*....
gi 2069483777 643 HTLDDAQRQ 651
Cdd:pfam15921 841 HTLDVKELQ 849
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
248-715 |
3.18e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 248 FEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEED-----Q 322
Cdd:pfam15921 54 FPKYEVELDSPRKIIAYPGKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDamadiR 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 323 EHDQQDREALALLTQQAERAEESARQLAAK-LQEKETQLAQALST--------SSDWCLRHSKEATAKGQLEEEVSALKL 393
Cdd:pfam15921 134 RRESQSQEDLRNQLQNTVHELEAAKCLKEDmLEDSNTQIEQLRKMmlshegvlQEIRSILVDFEEASGKKIYEHDSMSTM 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 394 QVAELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLtsseeklrgLQSEARRLKSTIKKHENLVEKYK 473
Cdd:pfam15921 214 HFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---------LQQHQDRIEQLISEHEVEITGLT 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 474 KKVQQARLESEECCLKLEATQKEAREvtvslerEKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADvhkRRNVEH 553
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARN-------QNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE---KQLVLA 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 554 SATLSEVRHKVEQqgsqlemFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVCE 633
Cdd:pfam15921 355 NSELTEARTERDQ-------FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNME 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 634 CNVLSRKLQHTLDDAQRQVDDSMQRVLAKERAsqskaldlqsqLSRAKSEMSQLQRSKqEMERRFQSQLQNLKDRLEQSD 713
Cdd:pfam15921 428 VQRLEALLKAMKSECQGQMERQMAAIQGKNES-----------LEKVSSLTAQLESTK-EMLRKVVEELTAKKMTLESSE 495
|
..
gi 2069483777 714 AT 715
Cdd:pfam15921 496 RT 497
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
157-711 |
3.80e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 157 KDKRLSKLHTASLRRQQELLIEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLADSEAENTRLlakfTNKE 236
Cdd:TIGR00618 320 MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTL----TQKL 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 237 KEAFKLAKHLDFEKENVKTteelskiLESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQ 316
Cdd:TIGR00618 396 QSLCKELDILQREQATIDT-------RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSL 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 317 RKEEDQEHDQQDrealalLTQQAERAEESARQLAAKLQEKETQLAQALstssdwclRHSKEATAKGQLEEEVSALKLQVA 396
Cdd:TIGR00618 469 KEREQQLQTKEQ------IHLQETRKKAVVLARLLELQEEPCPLCGSC--------IHPNPARQDIDNPGPLTRRMQRGE 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 397 ELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKstikkheNLVEKYKKKV 476
Cdd:TIGR00618 535 QTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-------DLTEKLSEAE 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 477 QQARLESEECCLKLEATQKEARevTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEhsat 556
Cdd:TIGR00618 608 DMLACEQHALLRKLQPEQDLQD--VRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLA---- 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 557 LSEVRHKVEQQGSQLEMFQQRNTLLQEEnnvhkekmynlERKLEDFKVENKEMSDTLIAKEATIrsvQQQLEekvcecnv 636
Cdd:TIGR00618 682 LQKMQSEKEQLTYWKEMLAQCQTLLREL-----------ETHIEEYDREFNEIENASSSLGSDL---AARED-------- 739
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2069483777 637 lsrKLQHTLDDAQRQVDDSMQ-RVLAKERASQSKALDLQSQlsrakSEMSQLQRSKQEMERRFQSQLQNLKDRLEQ 711
Cdd:TIGR00618 740 ---ALNQSLKELMHQARTVLKaRTEAHFNNNEEVTAALQTG-----AELSHLAAEIQFFNRLREEDTHLLKTLEAE 807
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
258-653 |
5.86e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 258 ELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQrKEEDQEHDQQDREALALLTQ 337
Cdd:pfam07888 45 ELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKY-KELSASSEELSEEKDALLAQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 338 QAERA------EESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVSALKLQVAELSSQ---LRSAEDK 408
Cdd:pfam07888 124 RAAHEarirelEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEfqeLRNSLAQ 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 409 SRTEREELRD---QFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEE 485
Cdd:pfam07888 204 RDTQVLQLQDtitTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQ 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 486 CCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHK----RRNVEHSATLSEVR 561
Cdd:pfam07888 284 LTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEvelgREKDCNRVQLSESR 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 562 HKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEdfKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKL 641
Cdd:pfam07888 364 RELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLE--TVADAKWSEAALTSTERPDSPLSDSEDENPEALQPPRPL 441
|
410
....*....|..
gi 2069483777 642 QHTLDDAQRQVD 653
Cdd:pfam07888 442 GHYSLCEQGQPD 453
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
270-474 |
5.95e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 5.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 270 LESQLSRAETEKRHLN------AQIQRM-------QQSYDQQYKELQALQKELQTVKQQ--------------------Q 316
Cdd:PRK04863 899 IREQLDEAEEAKRFVQqhgnalAQLEPIvsvlqsdPEQFEQLKQDYQQAQQTQRDAKQQafaltevvqrrahfsyedaaE 978
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 317 RKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKeTQLAQALSTSsdwclRHSKEATAKgQLEEEVSALKLQVA 396
Cdd:PRK04863 979 MLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQY-NQVLASLKSS-----YDAKRQMLQ-ELKQELQDLGVPAD 1051
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2069483777 397 ElssqlrSAEDKSRTEREELRDQFQHVSAENAStkldnqrLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKK 474
Cdd:PRK04863 1052 S------GAEERARARRDELHARLSANRSRRNQ-------LEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
257-536 |
6.59e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 6.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 257 EELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYD-QQYKELQ---ALQKeLQTVKQQQRKEEDQEHDQQDReaL 332
Cdd:PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDvQQTRAIQyqqAVQA-LERAKQLCGLPDLTADNAEDW--L 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 333 ALLTQQAERAEESARQLAAKLQ---------EKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVsALKLQVAELSSQLR 403
Cdd:PRK04863 445 EEFQAKEQEATEELLSLEQKLSvaqaahsqfEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQR-HLAEQLQQLRMRLS 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 404 SAEDKSRTER--EELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKH-ENLVEKYKKKVQQAR 480
Cdd:PRK04863 524 ELEQRLRQQQraERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQlEQLQARIQRLAARAP 603
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2069483777 481 --LESEECCLKLEATQKEAREVTVSLerekDQVKRELLDRLRGLETLPDKLRRAEQQL 536
Cdd:PRK04863 604 awLAAQDALARLREQSGEEFEDSQDV----TEYMQQLLERERELTVERDELAARKQAL 657
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
199-708 |
8.81e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 8.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 199 EHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAE 278
Cdd:pfam05483 230 EYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSM 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 279 TEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQR--KEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEK 356
Cdd:pfam05483 310 STQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSfvVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKK 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 357 ETQLAQ--ALSTSSDWCLRHSKEATA--------KGQLEEEVSALKLQVAELSSQLRSAEDK----------SRTEREEL 416
Cdd:pfam05483 390 SSELEEmtKFKNNKEVELEELKKILAedeklldeKKQFEKIAEELKGKEQELIFLLQAREKEihdleiqltaIKTSEEHY 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 417 RDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKE 496
Cdd:pfam05483 470 LKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 497 AREVTVSLEREKDQVKRelldrlrgletlpdKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQ 576
Cdd:pfam05483 550 LESVREEFIQKGDEVKC--------------KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQ 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 577 RNTLLQEEN-------NVHKEKMYNLERKLEDFKVENKEMSDT-----------------------LIAKEATI--RSVQ 624
Cdd:pfam05483 616 ENKALKKKGsaenkqlNAYEIKVNKLELELASAKQKFEEIIDNyqkeiedkkiseeklleevekakAIADEAVKlqKEID 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 625 QQLEEKVCECNVLSRKLQHTLDDAQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRS-------KQEMERR 697
Cdd:pfam05483 696 KRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQleiekeeKEKLKME 775
|
570
....*....|.
gi 2069483777 698 FQSQLQNLKDR 708
Cdd:pfam05483 776 AKENTAILKDK 786
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
263-729 |
9.58e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 9.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 263 LESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQ-YKELQALQKELQtvkqqqRKEEDQEHDQQDREALALLTQQAER 341
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIE------RLERELEERERRRARLEALLAALGL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 342 AEESARQLAAKLQEKETQLAQALSTSSDWC-LRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRDQF 420
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALeEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 421 QH-------------VSAEN---------------------------ASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKS 460
Cdd:COG4913 454 GLdeaelpfvgelieVRPEEerwrgaiervlggfaltllvppehyaaALRWVNRLHLRGRLVYERVRTGLPDPERPRLDP 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 461 tikkhENLVEK--YKKKVQQARLESE-------ECCLKLEATQKEAREVTVSLE-------REKD------------QVK 512
Cdd:COG4913 534 -----DSLAGKldFKPHPFRAWLEAElgrrfdyVCVDSPEELRRHPRAITRAGQvkgngtrHEKDdrrrirsryvlgFDN 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 513 RELLDRLRG-LETLPDKLRRAEQQLRDVQEEADVHKRRNVEHS--ATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHK 589
Cdd:COG4913 609 RAKLAALEAeLAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSDDLA 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 590 EkmynLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTLDDAQRQVD---DSMQRVLAKERAS 666
Cdd:COG4913 689 A----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEERFAAALGDAVE 764
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2069483777 667 QSKALDLQSQLSRAKSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATNRSLQNYVHFLKTS 729
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEED 827
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
215-359 |
1.03e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 215 KIRLADSEAENTRLLAKftnKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQS 294
Cdd:PRK12704 32 KIKEAEEEAKRILEEAK---KEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2069483777 295 YDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDR-EALALLTQ-QA-----ERAEESARQLAAKL-QEKETQ 359
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQElERISGLTAeEAkeillEKVEEEARHEAAVLiKEIEEE 181
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
262-413 |
1.13e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 41.64 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 262 ILESTRDHLESQLSRAETEKR---HLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQehdQQDREALALLTQQ 338
Cdd:pfam00529 62 SAEAQLAKAQAQVARLQAELDrlqALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQID---LARRRVLAPIGGI 138
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2069483777 339 AERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAkgQLEEEVSALKLQVAELSSQLRSA-EDKSRTER 413
Cdd:pfam00529 139 SRESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQA--EVRSELSGAQLQIAEAEAELKLAkLDLERTEI 212
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
311-711 |
1.27e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 311 TVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCL---RHSKEATAKGQLEEE 387
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEvleEHEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 388 VSALKLQVAELSSQLRSAEDKSRTER---EELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKK 464
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRerlEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 465 HENLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKrELLDRLRGLET----LPDKLRRAEQQLRDVQ 540
Cdd:PRK02224 340 HNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIE-ELEEEIEELRErfgdAPVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 541 EEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEkmynlerKLEDFKVENKEMSDTLIAKEATI 620
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVE-------TIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 621 RSVQQQLE--EKVCECNVLSRKLQHTLDDAQRQVDDSMQRVLAKERASQSK---ALDLQSQlSRAKSEMSQLQRSKQEME 695
Cdd:PRK02224 492 EEVEERLEraEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELrerAAELEAE-AEEKREAAAEAEEEAEEA 570
|
410 420
....*....|....*....|
gi 2069483777 696 RR----FQSQLQNLKDRLEQ 711
Cdd:PRK02224 571 REevaeLNSKLAELKERIES 590
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
187-724 |
1.27e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 187 NHSLRELLREWSEHERESLVWSEQKD--ALKIRLADSEAENTRLLAKFTNKEKEAFKLAKHLDFEKENVKTTEELSKILE 264
Cdd:TIGR00606 477 DQELRKAERELSKAEKNSLTETLKKEvkSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKS 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 265 STRDHLESQLSRAETeKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREA------------- 331
Cdd:TIGR00606 557 RHSDELTSLLGYFPN-KKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSsyedklfdvcgsq 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 332 -----LALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAE 406
Cdd:TIGR00606 636 deesdLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTE 715
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 407 dkSRTEREELRDQFQHVSAENASTKLDnqRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYkkkvqQARLESEEC 486
Cdd:TIGR00606 716 --SELKKKEKRRDEMLGLAPGRQSIID--LKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTI-----MPEEESAKV 786
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 487 CLKleatqkearEVTVsLEREKDQVKrelldrlrgletlpDKLRRAEQQlrdvqeeadVHKRRNVEHSATLSEVRHKVEQ 566
Cdd:TIGR00606 787 CLT---------DVTI-MERFQMELK--------------DVERKIAQQ---------AAKLQGSDLDRTVQQVNQEKQE 833
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 567 QGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEAtirsVQQQLEEKVCECNVLSRKLQhtld 646
Cdd:TIGR00606 834 KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ----FEEQLVELSTEVQSLIREIK---- 905
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2069483777 647 DAQRQVddsmqrvlakerasqskaLDLQSQLSRAKSEMSQLQRSKQEMERRFQSQLQNLKDRLEQSDATNRSLQNYVH 724
Cdd:TIGR00606 906 DAKEQD------------------SPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
241-365 |
1.41e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 241 KLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQ--YKELQALQKELQTVKQQQRK 318
Cdd:COG1579 28 ELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEALQKEIESLKRRISD 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2069483777 319 EEDQEHDQQdrEALALLTQQAERAEESARQLAAKLQEKETQLAQALS 365
Cdd:COG1579 108 LEDEILELM--ERIEELEEELAELEAELAELEAELEEKKAELDEELA 152
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
331-544 |
1.59e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 331 ALALLTQQAERAEESARQLAA---KLQEKETQLAQALSTSSDWCLRHSKEATAKGQLEEEVSALKLQVAELSSQLRSAED 407
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQlqqEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 408 KSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEEcc 487
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE-- 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2069483777 488 lkLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEAD 544
Cdd:COG4942 169 --LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
270-549 |
1.80e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 270 LESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTV------KQQQRKEEDQEHDQQDREALALLTQQAERAE 343
Cdd:COG3096 841 LRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQAnlladeTLADRLEELREELDAAQEAQAFIQQHGKALA 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 344 ESARQLAAkLQ---EKETQLAQALSTSSDWCLRHSKEATAKGQLE--------EEVSALKLQVAELSSQLRSAEDKSRTE 412
Cdd:COG3096 921 QLEPLVAV-LQsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVVqrrphfsyEDAVGLLGENSDLNEKLRARLEQAEEA 999
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 413 REELRDQFQHVSAENASTkldNQRLTVQLTSSEEKLRGLQSEARRLKST-IKKHENLVEKykkkvqqARLESEEccLKLE 491
Cdd:COG3096 1000 RREAREQLRQAQAQYSQY---NQVLASLKSSRDAKQQTLQELEQELEELgVQADAEAEER-------ARIRRDE--LHEE 1067
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2069483777 492 ATQKEARevtvslereKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRR 549
Cdd:COG3096 1068 LSQNRSR---------RSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAG 1116
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
294-700 |
1.82e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 294 SYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALLtQQAERAEESARQLaaKLQEKETQLAQalstsSDWCLR 373
Cdd:COG5022 807 GSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLI-QKFGRSLKAKKRF--SLLKKETIYLQ-----SAQRVE 878
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 374 HSKEATAKGQLE-EEVSALKLQVAELSSQLRsaeDKSRTEREELRDQFQHVSAENASTK--LDNQRLTVQLT---SSEEK 447
Cdd:COG5022 879 LAERQLQELKIDvKSISSLKLVNLELESEII---ELKKSLSSDLIENLEFKTELIARLKklLNNIDLEEGPSieyVKLPE 955
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 448 LRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLESEEcCLKLEATQKEAREVTVSLEREKDQVKRE--LLDRLRGLETL 525
Cdd:COG5022 956 LNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSE-LKNFKKELAELSKQYGALQESTKQLKELpvEVAELQSASKI 1034
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 526 PDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQ--GSQLEMFQQRNTLLQEENNVHKEKMYN----LERKL 599
Cdd:COG5022 1035 ISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSllDDKQLYQLESTENLLKTINVKDLEVTNrnlvKPANV 1114
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 600 EDFKVENKEMSDTLIAKEATIRSVQQQLEEKVcecNVLSrKLQHTLDDAQRQvdDSMQRVLA--------KERASQSKAL 671
Cdd:COG5022 1115 LQFIVAQMIKLNLLQEISKFLSQLVNTLEPVF---QKLS-VLQLELDGLFWE--ANLEALPSpppfaalsEKRLYQSALY 1188
|
410 420
....*....|....*....|....*....
gi 2069483777 672 DLQSQLSraKSEMSQLQRSKQEMERRFQS 700
Cdd:COG5022 1189 DEKSKLS--SSEVNDLKNELIALFSKIFS 1215
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
108-480 |
2.57e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 108 SNRRSKKADAGAEGRKvDVL--LRALVEAEIDGVAVANQLTALKETIDSLAKDKRLSKLHTASLR---RQQEllieKIEM 182
Cdd:COG3096 277 ANERRELSERALELRR-ELFgaRRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQtalRQQE----KIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 183 FDHTNHSLRELLRE-----------WSEHERESLVWSEQKDALKIRLADS----EAENTRLLA--KFTNKEKEAFKLAKH 245
Cdd:COG3096 352 YQEDLEELTERLEEqeevveeaaeqLAEAEARLEAAEEEVDSLKSQLADYqqalDVQQTRAIQyqQAVQALEKARALCGL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 246 LDFEKENVKTTEELSKILESTRDH----LESQLSRAETEKRHlnaqiqrmqqsYDQQYKELQALQKEL------QTVKQQ 315
Cdd:COG3096 432 PDLTPENAEDYLAAFRAKEQQATEevleLEQKLSVADAARRQ-----------FEKAYELVCKIAGEVersqawQTAREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 316 QRKEEDQEHDQQDREALAllTQQAEraeesARQLAAKLQEKETQLAQalstssdWCLRHSKEATAKGQLEEEVSALKLQV 395
Cdd:COG3096 501 LRRYRSQQALAQRLQQLR--AQLAE-----LEQRLRQQQNAERLLEE-------FCQRIGQQLDAAEELEELLAELEAQL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 396 AELSSQLRSAEDKS---RTEREELRDQFQHVS--------AENASTKLDNQrLTVQLTSSEEKLRGLQSEARRLKSTIKK 464
Cdd:COG3096 567 EELEEQAAEAVEQRselRQQLEQLRARIKELAarapawlaAQDALERLREQ-SGEALADSQEVTAAMQQLLEREREATVE 645
|
410
....*....|....*.
gi 2069483777 465 HENLVEKYKKKVQQAR 480
Cdd:COG3096 646 RDELAARKQALESQIE 661
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
530-666 |
2.76e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 530 RRAEQQLRDVQEEADVHKRRnvehsaTLSEVRHKVEQQGSQLEM-FQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKE 608
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKE------ALLEAKEEIHKLRNEFEKeLRERRNELQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2069483777 609 msdtLIAKEATIRSVQQQLEEKVCECNVLSRKLQHTL--------DDAQRQVDDSMQRVLAKERAS 666
Cdd:PRK12704 112 ----LEKKEKELEQKQQELEKKEEELEELIEEQLQELerisgltaEEAKEILLEKVEEEARHEAAV 173
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
296-697 |
2.97e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 296 DQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLAAKLQEKETQLAQALSTSSDWCLRHS 375
Cdd:PTZ00121 1090 DEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEA 1169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 376 KEATAKGQLEEEVSALKLQVAElssQLRSAEDKSRTerEELRDQFQHVSAENASTKLDNQRltVQLTSSEEKLRGLQSEA 455
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEVRKAE---ELRKAEDARKA--EAARKAEEERKAEEARKAEDAKK--AEAVKKAEEAKKDAEEA 1242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 456 RRLKstiKKHENLVEKYKKKVQQARLESEECCLKLEATQK-----EAREVTVSLEREKDQVKRElLDRLRGLETLPDKLR 530
Cdd:PTZ00121 1243 KKAE---EERNNEEIRKFEEARMAHFARRQAAIKAEEARKadelkKAEEKKKADEAKKAEEKKK-ADEAKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 531 RAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKV------ 604
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKadeakk 1398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 605 ---ENKEMSDTLIAKEATIRSVQQ--QLEEKVCECNVLSRKLQHT--LDDAQRQVDDSMQRVLAKERASQSKALDLQSQL 677
Cdd:PTZ00121 1399 kaeEDKKKADELKKAAAAKKKADEakKKAEEKKKADEAKKKAEEAkkADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
410 420
....*....|....*....|
gi 2069483777 678 SRAKSEMSQLQRSKQEMERR 697
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKK 1498
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
489-718 |
3.08e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 489 KLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQG 568
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 569 SQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEKvcecnvlSRKLQHTLDDA 648
Cdd:COG4942 111 RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE-------RAELEALLAEL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2069483777 649 QRQvddsmQRVLAKERASQSKAL-DLQSQLSRAKSEMSQLQRSKQemerrfqsQLQNLKDRLEQSDATNRS 718
Cdd:COG4942 184 EEE-----RAALEALKAERQKLLaRLEKELAELAAELAELQQEAE--------ELEALIARLEAEAAAAAE 241
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
187-458 |
3.15e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 187 NHSLRELLREWSEHERESLVWSEQKDALKIRLAdseaentrLLAKFtnkekeaFKLAKHLDFE--KENVKTTEELSKILE 264
Cdd:COG3096 842 RQRRSELERELAQHRAQEQQLRQQLDQLKEQLQ--------LLNKL-------LPQANLLADEtlADRLEELREELDAAQ 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 265 STRDHLESQLSRAETEKRHLNAqIQRMQQSYDQQYKELQALQKELQTVKQQ--------QRKE------------EDQEH 324
Cdd:COG3096 907 EAQAFIQQHGKALAQLEPLVAV-LQSDPEQFEQLQADYLQAKEQQRRLKQQifalsevvQRRPhfsyedavgllgENSDL 985
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 325 DQQDREALALLTQQAERAEESARQLAAKLQEKeTQLAQALSTSsdwclRHSKEATAKgQLEEEVSALKLQVAElssqlrS 404
Cdd:COG3096 986 NEKLRARLEQAEEARREAREQLRQAQAQYSQY-NQVLASLKSS-----RDAKQQTLQ-ELEQELEELGVQADA------E 1052
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 2069483777 405 AEDKSRTEREELRDQFQHVSAENAStkldnqrLTVQLTSSEEKLRGLQSEARRL 458
Cdd:COG3096 1053 AEERARIRRDELHEELSQNRSRRSQ-------LEKQLTRCEAEMDSLQKRLRKA 1099
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
303-647 |
3.25e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 303 QALQKELQTVKQQQRKEEDQEHDQQDRE-ALALLtQQAERAEESARQLAAKLQEKETQLAQALSTSSDwcLRHSKEATAK 381
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEqTLALL-DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEA--LKDDNDEETR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 382 GQLEeevsalKLQVAELSSQLrsaedksrterEELRDQFQHVSAENASTkldNQRLTVQLTSSEEKLRGLQSEARRLK-- 459
Cdd:PRK11281 116 ETLS------TLSLRQLESRL-----------AQTLDQLQNAQNDLAEY---NSQLVSLQTQPERAQAALYANSQRLQqi 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 460 STIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEarevtvsLEREKDQVKRELLDRLRGLETLpdKLRRAEQQLRDV 539
Cdd:PRK11281 176 RNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQR-------KSLEGNTQLQDLLQKQRDYLTA--RIQRLEHQLQLL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 540 QEEADvHKRRnvehsaTLSEvrHKVEQ-QGSQLEMFQQRNTLLQEENNVhkekmynlerkledfkveNKEMSDTLIakEA 618
Cdd:PRK11281 247 QEAIN-SKRL------TLSE--KTVQEaQSQDEAARIQANPLVAQELEI------------------NLQLSQRLL--KA 297
|
330 340 350
....*....|....*....|....*....|....
gi 2069483777 619 TIRS---VQQQLEEKvcecNVLSRKLQ--HTLDD 647
Cdd:PRK11281 298 TEKLntlTQQNLRVK----NWLDRLTQseRNIKE 327
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
228-711 |
3.64e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 228 LLAKFTNKEKEAFKlaKHLDFEKENVKTTEELSKILESTRDHLEsQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQK 307
Cdd:COG4717 47 LLERLEKEADELFK--PQGRKPELNLKELKELEEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 308 ELQTVKQQQRKEEDQEHDQQDREALALLTQQAE---RAEESARQLAAKLQEKETQLAQALSTSSDWCLRHSKEATakgql 384
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEelrELEEELEELEAELAELQEELEELLEQLSLATEEELQDLA----- 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 385 eEEVSALKLQVAELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSeekLRGLQSEARRLKSTIKK 464
Cdd:COG4717 199 -EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAA---LLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 465 HENLVekykkKVQQARLESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPdklrraeqqlRDVQEEAD 544
Cdd:COG4717 275 IAGVL-----FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP----------PDLSPEEL 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 545 VHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKvenkemsdtliAKEATIRSVQ 624
Cdd:COG4717 340 LELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQ-----------ELKEELEELE 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 625 QQLEEKVCECNVLSRKLQhtlddaQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEMERRfqSQLQN 704
Cdd:COG4717 409 EQLEELLGELEELLEALD------EEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELL--QELEE 480
|
....*..
gi 2069483777 705 LKDRLEQ 711
Cdd:COG4717 481 LKAELRE 487
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
231-721 |
4.02e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 231 KFTNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQ 310
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLS 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 311 TVKqqqrkEEDQEHDQQDREALAL------LTQQAERAEESARQLAAKLQEKETQLAQALSTSSDwclrhskeatAKGQL 384
Cdd:TIGR04523 205 NLK-----KKIQKNKSLESQISELkkqnnqLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK----------IKKQL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 385 EEEVSALKlQVAELSSQLRSAEDKSRTEREELRDQFQHVSaenastkldNQRLTVQLTSSEEKLRGLQSEARRLKSTIKK 464
Cdd:TIGR04523 270 SEKQKELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQDW---------NKELKSELKNQEKKLEEIQNQISQNNKIISQ 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 465 HENLVEKYKKKVQQARLESEECCLKLEATQKEARevtvSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEAD 544
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELEEKQNEIE----KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 545 VHKRRNVEHSATLSEVRHKVEQQGSQLEMfqqrntlLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQ 624
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKD-------LTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQ 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 625 QQLEEKVCECNVLSRKlqhtlddaQRQVDDSMQRVLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEMERR-----FQ 699
Cdd:TIGR04523 489 KELKSKEKELKKLNEE--------KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFElkkenLE 560
|
490 500
....*....|....*....|..
gi 2069483777 700 SQLQNLKDRLEQSDATNRSLQN 721
Cdd:TIGR04523 561 KEIDEKNKEIEELKQTQKSLKK 582
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
61-461 |
4.52e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 61 ILSSRRDRSRVQHQSEGGTGLQRDAEEQEEELDAVSKNLSVLLREQESNRRSKKADAGAEGRKVDVLLRALVEAEIDGVA 140
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 141 VANQLTALKETIDSLakDKRLSKLhTASLRRQQELLIEKIEMFDHTNHSLRELLREWSEHERESLVWSEQKDALKIRLAD 220
Cdd:PRK02224 410 AEDFLEELREERDEL--REREAEL-EATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELED 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 221 SEAENTRLLAKFtNKEKEAFKLAKHLDFEKENVKTTEELSKILESTRDHLESQLSRAETEKRHLNAQIQRMQQSYDQQYK 300
Cdd:PRK02224 487 LEEEVEEVEERL-ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 301 ELQALQKELQTVkQQQRKEEDQEHDQQDR--EALALLTQQAERAEESARQLAAkLQEKETQLAQALSTSSDwclRHSK-E 377
Cdd:PRK02224 566 EAEEAREEVAEL-NSKLAELKERIESLERirTLLAAIADAEDEIERLREKREA-LAELNDERRERLAEKRE---RKRElE 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 378 ATAKGQLEEEVSALKLQVAELSSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQRLTvQLTSSEEKLRGLQSEARR 457
Cdd:PRK02224 641 AEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERRE-ALENRVEALEALYDEAEE 719
|
....
gi 2069483777 458 LKST 461
Cdd:PRK02224 720 LESM 723
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
433-552 |
4.53e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 433 DNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQarLESEECCLKLEAtQKEAREVTVSLEREKDQVK 512
Cdd:PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK--LQEEEDKLLEEA-EKEAQQAIKEAKKEADEII 590
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2069483777 513 RELLDRLRGLET------LPDKLRRAEQQLRDVQEEADVHKRRNVE 552
Cdd:PRK00409 591 KELRQLQKGGYAsvkaheLIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
238-519 |
5.42e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 238 EAFKLAKHLDFEKENVKTTeelskiLESTRDHLES-QLSRAETEKrhLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQ 316
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQD------LEQTLALLDKiDRQKEETEQ--LKQQLAQAPAKLRQAQAELEALKDDNDEETRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 317 rkeedqehdqqdrealalltqqaeRAEESARQLAAKLQEKETQLAQALSTSSDWclrHSKEATAKGQLEE---EVSALKL 393
Cdd:PRK11281 118 ------------------------LSTLSLRQLESRLAQTLDQLQNAQNDLAEY---NSQLVSLQTQPERaqaALYANSQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 394 QVAELSSQLRSAEDKSRTEREELRDQFQhvsAE----NASTKLDNQRLTV--QLTSSEEKLRGLQSEarrlkstikkHEN 467
Cdd:PRK11281 171 RLQQIRNLLKGGKVGGKALRPSQRVLLQ---AEqallNAQNDLQRKSLEGntQLQDLLQKQRDYLTA----------RIQ 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 2069483777 468 LVEKYKKKVQQA----RL-ESEECCLKLEATQKEAREVTVSLEREKDQVKRELLDRL 519
Cdd:PRK11281 238 RLEHQLQLLQEAinskRLtLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRL 294
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
386-534 |
5.54e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 386 EEVSALKLQVAELSSQLRSAEDKSRTEREELRDQFQHVSAENAStklDNQRLTVQLtssEEKLRGLQSEARRLKSTIKKH 465
Cdd:COG2433 366 DEVKARVIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELT---EEEEEIRRL---EEQVERLEAEVEELEAELEEK 439
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2069483777 466 ENLVEKYKKKVQQARLESEEcclklEAtqKEAREVTvSLEREKDQVKRELLDRLRGLETLPDKLRRAEQ 534
Cdd:COG2433 440 DERIERLERELSEARSEERR-----EI--RKDREIS-RLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
514-730 |
5.59e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.45 E-value: 5.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 514 ELLDRLRGLETLPDKLRRaEQQLRDVQEEADVHKRRNVEHSATLSEVRHKveqqgsQLEMFQQRNTLLQEennvhKEKMY 593
Cdd:COG5022 811 EYRSYLACIIKLQKTIKR-EKKLRETEEVEFSLKAEVLIQKFGRSLKAKK------RFSLLKKETIYLQS-----AQRVE 878
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 594 NLERKLEDFKVENKE---MSDTLIAKEATI----RSVQQQLEEKVCECNVLSRKLQHTLDDA--------QRQVDDSMQR 658
Cdd:COG5022 879 LAERQLQELKIDVKSissLKLVNLELESEIielkKSLSSDLIENLEFKTELIARLKKLLNNIdleegpsiEYVKLPELNK 958
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 659 VLAKERASQSKALDLQSQLSRAKSEMSQLQRSKQEMERRFQ---------SQLQNLKDRLEQSDATNRSLQNYVHFLKTS 729
Cdd:COG5022 959 LHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKelaelskqyGALQESTKQLKELPVEVAELQSASKIISSE 1038
|
.
gi 2069483777 730 Y 730
Cdd:COG5022 1039 S 1039
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
268-482 |
5.62e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.04 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 268 DHLE-SQLSrAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQ------QRKE--EDQEHD---------QQDR 329
Cdd:PRK10929 190 DELElAQLS-ANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQReaeralESTEllAEQSGDlpksivaqfKINR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 330 EALALLTQQAERAEESA---RQLAAKLQeketQLAQALST---SSDWClrhsKEATAKGQleeevsALKLQVAEL----- 398
Cdd:PRK10929 269 ELSQALNQQAQRMDLIAsqqRQAASQTL----QVRQALNTlreQSQWL----GVSNALGE------ALRAQVARLpempk 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 399 SSQLRSAEDKSRTEREELRDQFQHVSAENASTKLDNQrltvQLTSSEEKLRGLQSEARR--LKSTIKKHENLV-EKYKKK 475
Cdd:PRK10929 335 PQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQADGQ----PLTAEQNRILDAQLRTQRelLNSLLSGGDTLIlELTKLK 410
|
....*..
gi 2069483777 476 VQQARLE 482
Cdd:PRK10929 411 VANSQLE 417
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
224-644 |
7.00e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.62 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 224 ENTRLLAKFTNKEKEAFKLAKHLDFEKENVkttEELSKILESTrdhlESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQ 303
Cdd:TIGR04523 212 KNKSLESQISELKKQNNQLKDNIEKKQQEI---NEKTTEISNT----QTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 304 ALQKELQTVKQQQRKEEDQEHDQQDREALALLTQQAERAEESARQLA------AKLQEKETQLAQALSTSSdwclrhSKE 377
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISqnnkiiSQLNEQISQLKKELTNSE------SEN 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 378 ATAKGQLEEEVSALKLQVAELSSQLRSAEdKSRTEREELRDQFQHVsaenastKLDNQRLTVQLTSSEEKLRGLQSEARR 457
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIK-NLESQINDLESKIQNQ-------EKLNQQKDEQIKKLQQEKELLEKEIER 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 458 LKSTIKKHENLVEKYKKKVQQARLESEECCLKLEATQKEAREVTVSLEREK---DQVKRELLDRLRGLETLPDKLRRAEQ 534
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKqnlEQKQKELKSKEKELKKLNEEKKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 535 QLRDVQEEADVHKRRNVEHSATLSEVRHKVEQQGSQLEMFQQRNT--LLQEENNVHKEKMYNLERKLEDFKVENKEMSDT 612
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQEEKQEL 590
|
410 420 430
....*....|....*....|....*....|..
gi 2069483777 613 LIAKEATIRSVQQQLEEKVCECNVLSRKLQHT 644
Cdd:TIGR04523 591 IDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
122-348 |
7.32e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 122 RKVDVLLRALVEAEIDGVAVANQLTALKETIDSLAKDKRL---------SKLHTASLRRQQELLIEKIEMFDHTNHSLRE 192
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlqrlaeyswDEIDVASAEREIAELEAELERLDASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 193 LLREWSEHERESLVWSEQKDALKIRLADSEAENTRLLAKFTNKEKEAFKLAK----HLDFEKENVKTTEELSKILESTRD 268
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlarlELRALLEERFAAALGDAVERELRE 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 269 HLESQLSRAETEKRHLNAQIQRMQQSYDQQYK--------------ELQALQKELQTVK--QQQRKEEDQEHDQQDREaL 332
Cdd:COG4913 770 NLEERIDALRARLNRAEEELERAMRAFNREWPaetadldadleslpEYLALLDRLEEDGlpEYEERFKELLNENSIEF-V 848
|
250
....*....|....*.
gi 2069483777 333 ALLTQQAERAEESARQ 348
Cdd:COG4913 849 ADLLSKLRRAIREIKE 864
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
256-364 |
7.56e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 39.81 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 256 TEELSKILEStrdhLESQLSRAETEKRHLNAQIQRMQQSYDQQYKELQALQKELQTVKQQQRKEEDQEHDQQDREALALL 335
Cdd:PRK00409 515 KEKLNELIAS----LEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEII 590
|
90 100 110
....*....|....*....|....*....|
gi 2069483777 336 TQQAERAEESARQLAAK-LQEKETQLAQAL 364
Cdd:PRK00409 591 KELRQLQKGGYASVKAHeLIEARKRLNKAN 620
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
326-548 |
8.00e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 326 QQDREALALLTQQAERAEESARQLAAKLQE-KETQLAQALSTSSDwclrhskeatakgQLEEEVSALKLQVAELSSQLRS 404
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEfRQKNGLVDLSEEAK-------------LLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 405 AEDKSRTEREELRDQFQHVSAENASTKLdnQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQarlESE 484
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVI--QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQ---EAQ 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2069483777 485 ECCLKLEATQKEAREVTVSLEREKDQVKRELLdrlrgletlpdKLRRAEQQLRDVQEEADVHKR 548
Cdd:COG3206 313 RILASLEAELEALQAREASLQAQLAQLEARLA-----------ELPELEAELRRLEREVEVARE 365
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
407-630 |
8.15e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 407 DKSRTEREELRDQFQHVSAENASTKLDNQRLTVQLTSSEEKLRGLQSEARRLKSTIKKHENLVEKYKKKVQQARLEseec 486
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 487 clkLEATQKEAREVTVSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQEEADVHKRRNVEHSATLSEVRHKVEQ 566
Cdd:COG4942 99 ---LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2069483777 567 QGSQLEMFQQRNTLLQEENNVHKEKMYNLERKLEDFKVENKEMSDTLIAKEATIRSVQQQLEEK 630
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
383-590 |
9.36e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 9.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 383 QLEEEVSALKLQVAELS--SQLRSAEDKSRTEREELRDQFQHVSAENASTKLDnqRLTVQLTSSEEKLRGLQSEARRLKS 460
Cdd:COG4913 239 RAHEALEDAREQIELLEpiRELAERYAAARERLAELEYLRAALRLWFAQRRLE--LLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069483777 461 TIKKHENLVEKYKKKVQQARLESEEcclkleatqkearevtvSLEREKDQVKRELLDRLRGLETLPDKLRRAEQQLRDVQ 540
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLE-----------------QLEREIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2069483777 541 EEADVHKRRNVEHSATLSEVRHKVEQQGSQLEmfQQRNTLLQEENNVHKE 590
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAE--AALRDLRRELRELEAE 427
|
|
| |
