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Conserved domains on  [gi|2065944012|gb|QXM16409|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Scelimena melli]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-165 2.52e-26

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 97.57  E-value: 2.52e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012   1 MSIIMSTSMLLNILFTQTKKPMNIIIIILMQTSIMTMMMSPKTQSPWFPYLLMIIFIGGMMVTFIYITSIMPNEKNNYNK 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012  81 IIITLViltatLLMMMTNTKNYYNNNETQLTETNNLTFSSSLILNKMFNKPMFLLYIMTTIYLFITLIAISNISNIEMGP 160
Cdd:MTH00166   81 KLLILF-----LLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGP 155


                  ....*
gi 2065944012 161 MRKKI 165
Cdd:MTH00166  156 LRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-165 2.52e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 97.57  E-value: 2.52e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012   1 MSIIMSTSMLLNILFTQTKKPMNIIIIILMQTSIMTMMMSPKTQSPWFPYLLMIIFIGGMMVTFIYITSIMPNEKNNYNK 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012  81 IIITLViltatLLMMMTNTKNYYNNNETQLTETNNLTFSSSLILNKMFNKPMFLLYIMTTIYLFITLIAISNISNIEMGP 160
Cdd:MTH00166   81 KLLILF-----LLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGP 155


                  ....*
gi 2065944012 161 MRKKI 165
Cdd:MTH00166  156 LRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 1-165 2.52e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 97.57  E-value: 2.52e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012   1 MSIIMSTSMLLNILFTQTKKPMNIIIIILMQTSIMTMMMSPKTQSPWFPYLLMIIFIGGMMVTFIYITSIMPNEKNNYNK 80
Cdd:MTH00166    1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012  81 IIITLViltatLLMMMTNTKNYYNNNETQLTETNNLTFSSSLILNKMFNKPMFLLYIMTTIYLFITLIAISNISNIEMGP 160
Cdd:MTH00166   81 KLLILF-----LLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGP 155


                  ....*
gi 2065944012 161 MRKKI 165
Cdd:MTH00166  156 LRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-165 4.71e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 44.23  E-value: 4.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012   1 MSIIMSTSMLLNILFTQTKKPMNIIIIILMQTSIMTMMMSPKTQSpWFPYLLMIIFIGGMMVTFIYITSIMPNEKNNYNK 80
Cdd:MTH00212    3 LSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLFFKK 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012  81 IIITLVILTATLLMMMTNTKNYYNNNETQLTETNNLTFSsslilnKMFNKPMFLLYIMTTIYLFITLIAISNISNIEMGP 160
Cdd:MTH00212   82 YFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELNVS------KILSNNNIPILLFLGLILLIALLMVVKICQYYKGP 155


                  ....*
gi 2065944012 161 MRKKI 165
Cdd:MTH00212  156 LRPFL 160
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 3-162 3.96e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 41.80  E-value: 3.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012   3 IIMSTSMLLNILFTQTKKPMNIIIIILMQTSIMTMMMSpKTQSPWFPYLLMIIFIGGMMVTFIYITSIMPNEKNNYNKII 82
Cdd:MTH00152    5 ILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSNFKF 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2065944012  83 ITLVILTATLLMMMTNTKNYYNNNETQLTETNNLTFSSSLILNKMFNKPMFLLYIMTTIYLFITLIAISNISNIEMGPMR 162
Cdd:MTH00152   84 VFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVKICYYEEGSLR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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