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Conserved domains on  [gi|2063619034|gb|QXI36008|]
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sarcosine oxidase [Pseudomonas promysalinigenes]

Protein Classification

sarcosine oxidase subunit gamma( domain architecture ID 10008634)

sarcosine oxidase subunit gamma (SoxG) is part of a heterotetrameric enzyme that catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10-methylenetetrahydrofolate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SoxG COG4583
Sarcosine oxidase gamma subunit [Amino acid transport and metabolism];
18-185 1.91e-26

Sarcosine oxidase gamma subunit [Amino acid transport and metabolism];


:

Pssm-ID: 443640  Cd Length: 169  Bit Score: 98.79  E-value: 1.91e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2063619034  18 VALQDLTEFPRVGFRGADAAEYLRGR-----GFDLPDTPnrALAQQDGTVVARLSQTEYFILGCGSDLGQRVADEEAtwE 92
Cdd:COG4583     2 VTLREVPPLGLVSLRARPGQEALAAAlkaalGLALPAPP--RVAAAGGRAALWLGPDEWLLLAPYGAAEDLAAALAA--A 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2063619034  93 LDHRANYLLPREDSHAWFELSGPAIEQVMAKVCGVDLRSTSFSEGQVAQTSAARINVIVIrskRDDTPCYHLLFDRASRD 172
Cdd:COG4583    78 LAGLHAAVVDVSDGRTVFELSGPRARDVLAKLCPLDLHPRAFPVGAAARTVLAHVGVVLW---RTGEDRFRLLVRRSFAD 154

                         170
                  ....*....|...
gi 2063619034 173 YFHGAILDAMQEF 185
Cdd:COG4583   155 YLWHWLEDAAREY 167
 
Name Accession Description Interval E-value
SoxG COG4583
Sarcosine oxidase gamma subunit [Amino acid transport and metabolism];
18-185 1.91e-26

Sarcosine oxidase gamma subunit [Amino acid transport and metabolism];


Pssm-ID: 443640  Cd Length: 169  Bit Score: 98.79  E-value: 1.91e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2063619034  18 VALQDLTEFPRVGFRGADAAEYLRGR-----GFDLPDTPnrALAQQDGTVVARLSQTEYFILGCGSDLGQRVADEEAtwE 92
Cdd:COG4583     2 VTLREVPPLGLVSLRARPGQEALAAAlkaalGLALPAPP--RVAAAGGRAALWLGPDEWLLLAPYGAAEDLAAALAA--A 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2063619034  93 LDHRANYLLPREDSHAWFELSGPAIEQVMAKVCGVDLRSTSFSEGQVAQTSAARINVIVIrskRDDTPCYHLLFDRASRD 172
Cdd:COG4583    78 LAGLHAAVVDVSDGRTVFELSGPRARDVLAKLCPLDLHPRAFPVGAAARTVLAHVGVVLW---RTGEDRFRLLVRRSFAD 154

                         170
                  ....*....|...
gi 2063619034 173 YFHGAILDAMQEF 185
Cdd:COG4583   155 YLWHWLEDAAREY 167
 
Name Accession Description Interval E-value
SoxG COG4583
Sarcosine oxidase gamma subunit [Amino acid transport and metabolism];
18-185 1.91e-26

Sarcosine oxidase gamma subunit [Amino acid transport and metabolism];


Pssm-ID: 443640  Cd Length: 169  Bit Score: 98.79  E-value: 1.91e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2063619034  18 VALQDLTEFPRVGFRGADAAEYLRGR-----GFDLPDTPnrALAQQDGTVVARLSQTEYFILGCGSDLGQRVADEEAtwE 92
Cdd:COG4583     2 VTLREVPPLGLVSLRARPGQEALAAAlkaalGLALPAPP--RVAAAGGRAALWLGPDEWLLLAPYGAAEDLAAALAA--A 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2063619034  93 LDHRANYLLPREDSHAWFELSGPAIEQVMAKVCGVDLRSTSFSEGQVAQTSAARINVIVIrskRDDTPCYHLLFDRASRD 172
Cdd:COG4583    78 LAGLHAAVVDVSDGRTVFELSGPRARDVLAKLCPLDLHPRAFPVGAAARTVLAHVGVVLW---RTGEDRFRLLVRRSFAD 154

                         170
                  ....*....|...
gi 2063619034 173 YFHGAILDAMQEF 185
Cdd:COG4583   155 YLWHWLEDAAREY 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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