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Conserved domains on  [gi|2058677|gb|AAB53321|]
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Kv4.3, partial [Rattus norvegicus]

Protein Classification

potassium voltage-gated channel subfamily D member( domain architecture ID 10570971)

potassium voltage-gated channel subfamily D member (KCND) similar to Oryctolagus cuniculus potassium channel alpha subunit Kv4.2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3399 pfam11879
Domain of unknown function (DUF3399); This domain is functionally uncharacterized. This domain ...
 14-109 1.11e-34

Domain of unknown function (DUF3399); This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 100 amino acids in length. This domain is found associated with pfam02214, pfam00520.


:

Pssm-ID: 463381  Cd Length: 76  Bit Score: 115.56  E-value: 1.11e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2058677     14 TTSLIESQHHHLLHCLEKTTglsylvddpllsvrtstikNHEFIDEQMFEQNCMESSMQNYPStRSPSLSSHSGLTTTCC 93
Cdd:pfam11879   1 STSLFESQHHHLLHCLEKTT-------------------NHEFVDEQTYEQNCLEVSLQNRPS-RSPSLSSQDGLTSSCC 60

                          90
                  ....*....|....*.
gi 2058677     94 SRRSKKTTHLPNSNLP 109
Cdd:pfam11879  61 SRRAKRNTRLPNSSVP 76
 
Name Accession Description Interval E-value
DUF3399 pfam11879
Domain of unknown function (DUF3399); This domain is functionally uncharacterized. This domain ...
 14-109 1.11e-34

Domain of unknown function (DUF3399); This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 100 amino acids in length. This domain is found associated with pfam02214, pfam00520.


Pssm-ID: 463381  Cd Length: 76  Bit Score: 115.56  E-value: 1.11e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2058677     14 TTSLIESQHHHLLHCLEKTTglsylvddpllsvrtstikNHEFIDEQMFEQNCMESSMQNYPStRSPSLSSHSGLTTTCC 93
Cdd:pfam11879   1 STSLFESQHHHLLHCLEKTT-------------------NHEFVDEQTYEQNCLEVSLQNRPS-RSPSLSSQDGLTSSCC 60

                          90
                  ....*....|....*.
gi 2058677     94 SRRSKKTTHLPNSNLP 109
Cdd:pfam11879  61 SRRAKRNTRLPNSSVP 76
 
Name Accession Description Interval E-value
DUF3399 pfam11879
Domain of unknown function (DUF3399); This domain is functionally uncharacterized. This domain ...
 14-109 1.11e-34

Domain of unknown function (DUF3399); This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 100 amino acids in length. This domain is found associated with pfam02214, pfam00520.


Pssm-ID: 463381  Cd Length: 76  Bit Score: 115.56  E-value: 1.11e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2058677     14 TTSLIESQHHHLLHCLEKTTglsylvddpllsvrtstikNHEFIDEQMFEQNCMESSMQNYPStRSPSLSSHSGLTTTCC 93
Cdd:pfam11879   1 STSLFESQHHHLLHCLEKTT-------------------NHEFVDEQTYEQNCLEVSLQNRPS-RSPSLSSQDGLTSSCC 60

                          90
                  ....*....|....*.
gi 2058677     94 SRRSKKTTHLPNSNLP 109
Cdd:pfam11879  61 SRRAKRNTRLPNSSVP 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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