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Conserved domains on  [gi|2054262405|gb|QWT71649|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Saussurella borneensis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-310 2.80e-133

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 380.27  E-value: 2.80e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   6 YFMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFG 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  86 FFLSLVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVG 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 166 GYDFFLFFKYQP-VWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLI 244
Cdd:MTH00193  161 SFNLLDFMNYQKyIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2054262405 245 SLFFFGGDFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGMWMII 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-310 2.80e-133

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 380.27  E-value: 2.80e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   6 YFMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFG 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  86 FFLSLVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVG 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 166 GYDFFLFFKYQP-VWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLI 244
Cdd:MTH00193  161 SFNLLDFMNYQKyIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2054262405 245 SLFFFGGDFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGMWMII 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
14-302 3.08e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 281.28  E-value: 3.08e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  14 LLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLSLVIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  94 LLFPY--LTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGYDFFL 171
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 172 FFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISLFFFG 250
Cdd:pfam00146 163 IVEAQaGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2054262405 251 G------DFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-310 3.25e-92

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 277.01  E-value: 3.25e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   1 MFLFDYFMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCF 80
Cdd:COG1005     3 LLLAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  81 SPVFGFFLSLVIWLLFPYLTFF--TSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILL 158
Cdd:COG1005    83 APILAFIPALLAFAVIPFGPGLvlADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 159 SMIVLVGGYDFFLFFKYQ--PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSM 236
Cdd:COG1005   163 GVVLLAGSLNLSEIVEAQagGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYAN 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 237 IIFMSFLISLFFFGG--------DFYSLL----FFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLnYFLFFV 304
Cdd:COG1005   243 MFLVSALATTLFLGGwlgpfpilPLGGLPgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL-VNLVLT 321


                  ....*.
gi 2054262405 305 GMWMII 310
Cdd:COG1005   322 AAVVLL 327
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
14-297 1.88e-46

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 159.48  E-value: 1.88e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  14 LLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLSLVIW 93
Cdd:NF040610   17 LALIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLML 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  94 LLFP----------YLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVL 163
Cdd:NF040610   97 VAIPfgaviingveYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIM 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 164 VGGYDFFLFFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSF 242
Cdd:NF040610  177 AGSLNIVEIVEAQsPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSF 256

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 243 LISLFFFGG--------------DFYSLLFFISISLLSFSFL-WVRGTCPRYRYDKLMYLSWSSFLPVSL 297
Cdd:NF040610  257 LVVLLFLGGwnlpgfvtdipvlgIILPTLFFLMKVAIVLMFIiMIRWAVPRFRIDQVVDLSWKRLLPLSL 326
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-310 2.80e-133

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 380.27  E-value: 2.80e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   6 YFMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFG 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  86 FFLSLVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVG 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 166 GYDFFLFFKYQP-VWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLI 244
Cdd:MTH00193  161 SFNLLDFMNYQKyIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2054262405 245 SLFFFGGDFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGMWMII 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 8-308 3.34e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 342.40  E-value: 3.34e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   8 MCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFF 87
Cdd:MTH00225    2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  88 LSLVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGY 167
Cdd:MTH00225   82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 168 DFFLFFKYQPV-WFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISL 246
Cdd:MTH00225  162 NLFDFSYNQKYfWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2054262405 247 FFFGGDFY--SLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGMWM 308
Cdd:MTH00225  242 LFFGGFFVtiDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 10-307 5.78e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 326.44  E-value: 5.78e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  10 LVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLS 89
Cdd:MTH00143    4 LLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  90 LVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGYDF 169
Cdd:MTH00143   84 LLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSF 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 170 FLFFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISLFF 248
Cdd:MTH00143  164 IEISESQfSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLF 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2054262405 249 FGGDF-----YSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGMW 307
Cdd:MTH00143  244 FGGSSvlfllGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVLV 307
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 7-306 7.64e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 326.85  E-value: 7.64e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   7 FMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGF 86
Cdd:MTH00111    5 LLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILAL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  87 FLSLVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGG 166
Cdd:MTH00111   85 LLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 167 YDFFLFFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLIS 245
Cdd:MTH00111  165 YTLQTLATTQePLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTT 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2054262405 246 LFFFGGDFYSL---LFFISIS----LLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGM 306
Cdd:MTH00111  245 ILFLNPSTLNLppeLFTINLMtktlLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSM 312
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 7-306 5.78e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 316.95  E-value: 5.78e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   7 FMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGF 86
Cdd:MTH00071    5 ISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMAL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  87 FLSLVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGG 166
Cdd:MTH00071   85 TLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 167 YDFFLF-FKYQPVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLIS 245
Cdd:MTH00071  165 FSLMNFnTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLST 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2054262405 246 LFFFGGDFY-------SLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGM 306
Cdd:MTH00071  245 ILFLGSTYNhlqpelsTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISL 312
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 10-310 4.57e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 314.16  E-value: 4.57e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  10 LVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLS 89
Cdd:MTH00218    5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  90 LVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGYDF 169
Cdd:MTH00218   85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 170 FLFFKYQP-VWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISLFF 248
Cdd:MTH00218  165 EGFNLTQEtIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILF 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2054262405 249 FGGDFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGMWMII 310
Cdd:MTH00218  245 LGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSF 306
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 10-297 1.26e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 308.46  E-value: 1.26e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  10 LVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLS 89
Cdd:MTH00134    9 IINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  90 LVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGYDF 169
Cdd:MTH00134   89 LTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTL 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 170 FLFFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISLFF 248
Cdd:MTH00134  169 QTFNTAQeSIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILF 248

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2054262405 249 FGGDFYSLL-------FFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSL 297
Cdd:MTH00134  249 LGASHIPTLpelttinLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTL 304
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 8-306 2.71e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 305.01  E-value: 2.71e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   8 MCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFF 87
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  88 LSLVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGY 167
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 168 DFFLFFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISL 246
Cdd:MTH00104  161 TLSTLITTQeHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2054262405 247 FFFGG-------DFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGM 306
Cdd:MTH00104  241 LFLGAfhnpympELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISL 307
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 5-304 1.30e-99

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 295.73  E-value: 1.30e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   5 DYFMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVF 84
Cdd:MTH00040    2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  85 GFFLSLVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLV 164
Cdd:MTH00040   82 FLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 165 GGYDFFLFFKYQP-VWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFL 243
Cdd:MTH00040  162 GSFSLSSISNSQNgSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2054262405 244 ISLFFFGGD-FYSLLFFISI-------SLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFV 304
Cdd:MTH00040  242 SVILFLGGGsPFNEIFPINIiivgiktTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYL 310
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 8-304 1.00e-98

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 292.80  E-value: 1.00e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   8 MCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFF 87
Cdd:MTH00195    3 ISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  88 LSLVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGY 167
Cdd:MTH00195   83 LALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSF 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 168 DFFLFFKYQPV-WFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISL 246
Cdd:MTH00195  163 DFTIMVISQGFsWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTI 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2054262405 247 FFFGGDfYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFV 304
Cdd:MTH00195  243 LFLGGG-GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLA 299
NADHdh pfam00146
NADH dehydrogenase;
14-302 3.08e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 281.28  E-value: 3.08e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  14 LLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLSLVIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  94 LLFPY--LTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGYDFFL 171
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 172 FFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISLFFFG 250
Cdd:pfam00146 163 IVEAQaGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2054262405 251 G------DFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-310 3.25e-92

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 277.01  E-value: 3.25e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   1 MFLFDYFMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCF 80
Cdd:COG1005     3 LLLAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  81 SPVFGFFLSLVIWLLFPYLTFF--TSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILL 158
Cdd:COG1005    83 APILAFIPALLAFAVIPFGPGLvlADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 159 SMIVLVGGYDFFLFFKYQ--PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSM 236
Cdd:COG1005   163 GVVLLAGSLNLSEIVEAQagGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYAN 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 237 IIFMSFLISLFFFGG--------DFYSLL----FFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLnYFLFFV 304
Cdd:COG1005   243 MFLVSALATTLFLGGwlgpfpilPLGGLPgilwFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL-VNLVLT 321


                  ....*.
gi 2054262405 305 GMWMII 310
Cdd:COG1005   322 AAVVLL 327
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 14-310 8.07e-91

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 272.81  E-value: 8.07e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  14 LLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLSLVIW 93
Cdd:MTH00010   10 LLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLW 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  94 LLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGYDFFLFF 173
Cdd:MTH00010   90 SLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKII 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 174 KYQPVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISLFFFG--- 250
Cdd:MTH00010  170 MSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSfip 249

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2054262405 251 GDFYSLLFFISISL-LSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGMWMII 310
Cdd:MTH00010  250 SIFISDLMLILKTVfLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
10-297 8.86e-86

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 260.12  E-value: 8.86e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  10 LVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLS 89
Cdd:PRK06076   13 LLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPA 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  90 LVIWLLFPYLTFF--TSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGY 167
Cdd:PRK06076   93 FLAWAVIPFGPELviADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 168 DFFLFFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISL 246
Cdd:PRK06076  173 NLSDIVEAQfLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITT 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2054262405 247 FFFGG----------DFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSL 297
Cdd:PRK06076  253 LFLGGwlppfplgggIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 8-306 9.87e-83

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 252.73  E-value: 9.87e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   8 MCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFF 87
Cdd:MTH00054    3 IIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  88 LSLVIWLLFPYLT--FFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVG 165
Cdd:MTH00054   83 LAFIAWGVIPYGEgvVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 166 GYDFFLFFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLI 244
Cdd:MTH00054  163 SLNLTEIVLAQkNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFG 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2054262405 245 SLFFFGGDFY----------SLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGM 306
Cdd:MTH00054  243 VILFLGGWLVisgptsyfsnFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGI 314
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 10-306 1.89e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 251.96  E-value: 1.89e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  10 LVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLS 89
Cdd:MTH00216    9 LIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  90 LVIWLLFPYL--TFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGY 167
Cdd:MTH00216   89 LIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSL 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 168 DF--FLFFKYQPVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLIS 245
Cdd:MTH00216  169 SIteIVLAQNNGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTT 248

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2054262405 246 LFFFGG--------DFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGM 306
Cdd:MTH00216  249 ILFLGGwlspikyfKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASV 317
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-306 7.35e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 217.96  E-value: 7.35e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   1 MFLFDYFMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCF 80
Cdd:MTH00029    1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  81 SPVFGFFLSLVIWLLFPYL--TFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILL 158
Cdd:MTH00029   81 APIISFTLAILAWAIVTMDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIII 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 159 SMIVLVGGYDFF-LFFKYQPVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMI 237
Cdd:MTH00029  161 SVILCVGSLNISeIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 238 IFMSFLISLFFFGG-----------------------DFYSLLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLP 294
Cdd:MTH00029  241 ILMSCMMTIFFLGGwlspldgiptppeafsifeqiasSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLP 320

                         330
                  ....*....|..
gi 2054262405 295 VSLNYFLFFVGM 306
Cdd:MTH00029  321 LSLGLVILTAGI 332
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-308 4.92e-60

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 193.19  E-value: 4.92e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  12 NFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLSLV 91
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  92 IWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGYDFFL 171
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 172 FfkyqpvwFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISLFFFgg 251
Cdd:MTH00090  161 S-------FSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFF-- 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2054262405 252 DFYSLLFFISISLLSFsflwVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFVGMWM 308
Cdd:MTH00090  232 KFSFLMLFLIFSLLIF----IRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
14-297 1.88e-46

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 159.48  E-value: 1.88e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  14 LLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLSLVIW 93
Cdd:NF040610   17 LALIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLML 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  94 LLFP----------YLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVL 163
Cdd:NF040610   97 VAIPfgaviingveYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIM 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 164 VGGYDFFLFFKYQ-PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSF 242
Cdd:NF040610  177 AGSLNIVEIVEAQsPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSF 256

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 243 LISLFFFGG--------------DFYSLLFFISISLLSFSFL-WVRGTCPRYRYDKLMYLSWSSFLPVSL 297
Cdd:NF040610  257 LVVLLFLGGwnlpgfvtdipvlgIILPTLFFLMKVAIVLMFIiMIRWAVPRFRIDQVVDLSWKRLLPLSL 326
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 10-304 4.42e-44

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 152.00  E-value: 4.42e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  10 LVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSPVFGFFLS 89
Cdd:MTH00058    4 LVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  90 LVIWLLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMIVLVGGYDF 169
Cdd:MTH00058   84 VFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 170 FLFfkYQPVWFIFVSFPLFLCCFCSC-LAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEYSMIIFMSFLISLFF 248
Cdd:MTH00058  164 VDF--YYSGWLSVLLFPLIYILWLVCiLCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLF 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2054262405 249 FGGDFYSLLFFISIsllsFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFV 304
Cdd:MTH00058  242 FGGGFVSIMLLFHL----LFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-297 1.91e-35

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 131.23  E-value: 1.91e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   3 LFDYFMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPNSVGFVGILQPFGDAVKLFTSEQNIPVFSNNILFCFSP 82
Cdd:CHL00032   23 VYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGP 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  83 ---VFGFFLS-LVIwlLFPYLTFFTSFSLGFLYFLCISSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILL 158
Cdd:CHL00032  103 siaVISILLSyLVI--PFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVL 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 159 SMIVL---------VGGYDFFLFFKY----QPVWFIFVsfplflccFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGG 225
Cdd:CHL00032  181 SISLLsnslstvdiVEAQSKYGFWGWnlwrQPIGFIVF--------LISSLAECERLPFDLPEAEEELVAGYQTEYSGIK 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 226 FALIFLAEYSMIIFMSFLISLFFFGGDFYSLLFF--------------------ISISLL-SFSFLWV----RGTCPRYR 280
Cdd:CHL00032  253 FGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIfipelfeinktggvfgttigIFITLAkTYLFLFIsittRWTLPRLR 332

                         330
                  ....*....|....*..
gi 2054262405 281 YDKLMYLSWSSFLPVSL 297
Cdd:CHL00032  333 MDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
7-304 2.63e-27

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 107.96  E-value: 2.63e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405   7 FMCLVNFLLIIVFVLISVAFLTLLERSVLGYVQIRKGPnsvgfvGILQPFGDAVKLFTSEQNIPVfSNNILFCFSPVFGF 86
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPE-TASWLFRAAPYVAL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405  87 FLSLVIWLLFPYLTFFTSFS-----LGFLYFLcisSLGVYGLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLAMILLSMI 161
Cdd:COG0650    74 AAMLLAALLVPVLTTGPPLSfsgdlIVLVYLL---ALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2054262405 162 VLVGGYDFFLFFKYQ----PVWFIFVSFPLFLCCFCSCLAETNRTPFDFAEGESELVSGFNVEYSGGGFALIFLAEY-SM 236
Cdd:COG0650   151 LLAGSTSLSDIVAYQaahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAAlKL 230

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2054262405 237 IIFMSFLISLFFFGGDFYS-----LLFFISISLLSFSFLWVRGTCPRYRYDKLMYLSWSSFLPVSLNYFLFFV 304
Cdd:COG0650   231 FVLLSLFVNLFLPWGIALTlllalLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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