NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2052620789|gb|QWQ55687|]
View 

NADH dehydrogenase subunit 6 (mitochondrion) [Gryllodes sigillatus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 22-171 3.17e-18

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 76.77  E-value: 3.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620789  22 HPLSITLLIIAQTLFICSMSGPISYSFWFSYILFLIFLGGMLVLFIYITSLASNEMFSLPIKSSLFISSLSITLLfmllf 101
Cdd:MTH00166   20 HPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLLMLLLML----- 94

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620789 102 lfneLISPLLYKNDSFNNKTMSLNMENSLNQLYNLPNLNLTIMTILYLLLTLIIIVKITYIHEGPLRQSN 171
Cdd:MTH00166   95 ----NNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 22-171 3.17e-18

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 76.77  E-value: 3.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620789  22 HPLSITLLIIAQTLFICSMSGPISYSFWFSYILFLIFLGGMLVLFIYITSLASNEMFSLPIKSSLFISSLSITLLfmllf 101
Cdd:MTH00166   20 HPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLLMLLLML----- 94

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620789 102 lfneLISPLLYKNDSFNNKTMSLNMENSLNQLYNLPNLNLTIMTILYLLLTLIIIVKITYIHEGPLRQSN 171
Cdd:MTH00166   95 ----NNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 22-171 3.17e-18

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 76.77  E-value: 3.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620789  22 HPLSITLLIIAQTLFICSMSGPISYSFWFSYILFLIFLGGMLVLFIYITSLASNEMFSLPIKSSLFISSLSITLLfmllf 101
Cdd:MTH00166   20 HPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLLMLLLML----- 94

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620789 102 lfneLISPLLYKNDSFNNKTMSLNMENSLNQLYNLPNLNLTIMTILYLLLTLIIIVKITYIHEGPLRQSN 171
Cdd:MTH00166   95 ----NNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITNIFKGPLRSKN 160
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-78 1.18e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 48.73  E-value: 1.18e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2052620789   1 MFILSIIFMMMIINIIFTMMIHPLSITLLIIAQTLFICSMSGPISySFWFSYILFLIFLGGMLVLFIYITSLASNEMF 78
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTL-SSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLF 77
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-169 2.17e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 45.38  E-value: 2.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620789   1 MFILSIIFMMMIINIIFTMMIHPLSITLLIIAQTLFICSMSGpISYSFWFSYILFLIFLGGMLVLFIYITSLASNEMFSL 80
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIIT-MESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620789  81 PIKSSLFISSLSITllfmllflfneLISPLLYKNDSFNNKTM-SLNMENSLNQLYNLPNLNLTIMTILYLLLTLIIIVKI 159
Cdd:MTH00212   80 KKYFKGFGMILISL-----------NLYLLLMTLGSSNFSPMlNLKLELNVSKILSNNNIPILLFLGLILLIALLMVVKI 148

                         170
                  ....*....|
gi 2052620789 160 TYIHEGPLRQ 169
Cdd:MTH00212  149 CQYYKGPLRP 158
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 47-74 2.03e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 42.82  E-value: 2.03e-05
                          10        20
                  ....*....|....*....|....*...
gi 2052620789  47 SFwFSYILFLIFLGGMLVLFIYITSLAS 74
Cdd:MTH00138   49 SF-LSLVLFLIYLGGMLVVFAYSAALAA 75
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 51-73 8.90e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 37.91  E-value: 8.90e-04
                          10        20
                  ....*....|....*....|...
gi 2052620789  51 SYILFLIFLGGMLVLFIYITSLA 73
Cdd:MTH00065   52 SLVLFLIYLGGMLVVFAYSAALA 74
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 49-74 2.16e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 37.04  E-value: 2.16e-03
                          10        20
                  ....*....|....*....|....*.
gi 2052620789  49 WFSYILFLIFLGGMLVLFIYITSLAS 74
Cdd:MTH00115   50 FVSLVLFLVYLGGMLVVFAYSVSLAA 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH