NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2052620785|gb|QWQ55683|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Gryllodes sigillatus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 2.61e-43

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 137.30  E-value: 2.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2052620785  81 QKSSDPLAWLLTLMFFIVILLLGLYHEWNQGALEWAE 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 2.61e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 137.30  E-value: 2.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2052620785  81 QKSSDPLAWLLTLMFFIVILLLGLYHEWNQGALEWAE 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 7.35e-26

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 92.49  E-value: 7.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785  19 MMLSMVLSKKTIlDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKSSdPLAWLLTLMFFIV 98
Cdd:pfam00507   1 LLLSRLLGPKRP-NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFREL-GWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2052620785  99 ILLLGLYHEWNQGALE 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-115 4.55e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.94  E-value: 4.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   7 FIMFILILSTILMMLSMVLSKKTiLDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKSSDP 86
Cdd:COG0838    11 FLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW 89

                          90       100
                  ....*....|....*....|....*....
gi 2052620785  87 LAwLLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:COG0838    90 FG-LIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 2.61e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 137.30  E-value: 2.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2052620785  81 QKSSDPLAWLLTLMFFIVILLLGLYHEWNQGALEWAE 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-115 1.19e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 130.67  E-value: 1.19e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   5 FTFIMFILILSTILMMLSMVLSKKTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKSS 84
Cdd:MTH00161    3 LIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2052620785  85 DPLAWLLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:MTH00161   83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 8.51e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 115.86  E-value: 8.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMII 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2052620785  81 QKSSDPLAWLLTLMFFIVILLLGLYHEWNQGALEWAE 117
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-117 2.50e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 109.62  E-value: 2.50e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTIlDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMII 80
Cdd:MTH00136    1 MNLITTILTITIALSLILAIVSFWLPQMTP-DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2052620785  81 QKSSDPLAWLLTLMFFIVILLLGLYHEWNQGALEWAE 117
Cdd:MTH00136   80 DQLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 1.05e-30

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 105.45  E-value: 1.05e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTiLDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMII 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRS-PDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2052620785  81 QKSSDPLAWLLTLMFFIVILLLGLYHEWNQGALEWAE 117
Cdd:MTH00042   80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 3.41e-30

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 104.17  E-value: 3.41e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMII 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2052620785  81 QKSSDPLAWLLTLMFFIVILLLGLYHEWNQGALEWA 116
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-116 8.74e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 100.73  E-value: 8.74e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   2 MVTFTFIMFILILSTILMMLSMVLSKkTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMP-AMII 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQ-TKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlPWAI 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2052620785  81 QKSSDPLAWLLTLMFFIvILLLGLYHEWNQGALEWA 116
Cdd:MTH00113   80 NLTTPTTTLTWATIILT-LLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-117 4.68e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 98.91  E-value: 4.68e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   4 TFTFIMFILILSTILMMLSMVLSKKTIlDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKS 83
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNP-DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2052620785  84 SDPLAWLLTLMFFIVILLLGLYHEWNQGALEWAE 117
Cdd:MTH00069   81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 7.35e-26

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 92.49  E-value: 7.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785  19 MMLSMVLSKKTIlDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKSSdPLAWLLTLMFFIV 98
Cdd:pfam00507   1 LLLSRLLGPKRP-NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFREL-GWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2052620785  99 ILLLGLYHEWNQGALE 114
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 4-117 8.50e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 93.08  E-value: 8.50e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   4 TFTFIMFILILSTILMMLSMVLSKKTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKS 83
Cdd:MTH00106    2 NLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQT 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2052620785  84 SDPLAWLLTLMFFIVILLLGLYHEWNQGALEWAE 117
Cdd:MTH00106   82 NNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 5-115 1.69e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 92.27  E-value: 1.69e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   5 FTFIMFILILSTILMMLSMVLSK--KTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQK 82
Cdd:MTH00203    2 NLIMLFFLIALLLSLILLFIAFWlpKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQ 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2052620785  83 SSDPlaWLLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:MTH00203   82 LSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-115 4.55e-23

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 85.94  E-value: 4.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   7 FIMFILILSTILMMLSMVLSKKTiLDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKSSDP 86
Cdd:COG0838    11 FLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGW 89

                          90       100
                  ....*....|....*....|....*....
gi 2052620785  87 LAwLLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:COG0838    90 FG-LIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 5-115 1.10e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 85.11  E-value: 1.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   5 FTFIMFILILSTILMMLSMVLSKKtILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKSS 84
Cdd:MTH00018    4 FILLIFSVVLSALFSGASYFLGVK-QPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2052620785  85 DPLAWlLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:MTH00018   83 APFGF-WTMVGFLFILTLGLIYEWIKGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-116 3.54e-21

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 81.45  E-value: 3.54e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   7 FIMFILI---LSTILMMLSMVLSKKTiLDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMP-AMIIQK 82
Cdd:PRK06602   11 FLIFLIVaigLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwAVSFRE 89

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2052620785  83 SSDPLAWllTLMFFIVILLLGLYHEWNQGALEWA 116
Cdd:PRK06602   90 IGWLGFV--EAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 1.67e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 79.75  E-value: 1.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTIlDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMII 80
Cdd:MTH00055    5 FLGIFILLLFSIGLSTVISGASYIVGVKQP-DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2052620785  81 QKSSDPLAWlLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:MTH00055   84 YNQIGLFGF-WVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 11-115 6.53e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 65.34  E-value: 6.53e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785  11 ILILSTILMMLSMVLSKKTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKSSDPLAWL 90
Cdd:MTH00030   19 ILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFW 98

                          90       100
                  ....*....|....*....|....*
gi 2052620785  91 LTLMfFIVILLLGLYHEWNQGALEW 115
Cdd:MTH00030   99 IVYT-FLIVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 34-115 5.76e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 52.68  E-value: 5.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785  34 EKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQKSSDPLAWLLTLMFfIVILLLGLYHEWNQGAL 113
Cdd:CHL00022   39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIF-VLILIVGLVYAWRKGAL 117


                  ..
gi 2052620785 114 EW 115
Cdd:CHL00022  118 EW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
7-115 1.69e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 51.59  E-value: 1.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   7 FIMFIL---ILSTILMMLSMVLSKKTILDRE--KSSPFECGFDP-KSSARLpfSLRFFLIAVIFLIFDVEIALIMPAMII 80
Cdd:PRK08489   14 FVLLVLtfvAFFLTTRLARFISRKLAQKNTEklKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVD 91

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2052620785  81 QKSsdpLAW--LLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:PRK08489   92 FKL---LGLfgLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
2-115 2.17e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 51.28  E-value: 2.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   2 MVTFTFIMFILILSTILMMLSMVLSKKtILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIIQ 81
Cdd:PRK07756   10 MIVLIFLLLGILLPVVALTLGRMLRPN-KPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2052620785  82 KSSDPLAwLLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:PRK07756   89 DKLGLFA-LIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 2-115 9.40e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 49.28  E-value: 9.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   2 MVTFTFIMFILILSTILMMLSMVLSK---KTILDREKSSPFECGFDPKSSARLP--FSLRFFLIAVIFLIFDVEIALIMP 76
Cdd:PRK07928    1 MNVYIPILVLGALAAAFAVVSVVVASlvgPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2052620785  77 AMIiqkSSDPLAW--LLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:PRK07928   81 WAV---SFDALGVfgLVEMALFMLTVFVAYAYVWRRGGLEW 118
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 1-115 7.41e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 41.81  E-value: 7.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTILDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALI--MPAM 78
Cdd:MTH00060    3 VLLFVFFVFFLLFLVIYFFHSGLWNNKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLlnMPFQ 82

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2052620785  79 IIQKSSdplawLLTLMFFIVILLLGLYHEWNQGALEW 115
Cdd:MTH00060   83 GLLFYN-----FWYYYFFLLLLFLGFVVELFSGYVRW 114
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 1.04e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 41.03  E-value: 1.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2052620785   1 MMVTFTFIMFILILSTILMMLSMVLSKKTiLDREKSSPFECGFDPKSSARLPFSLRFFLIAVIFLIFDVEIALIMPAMIi 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLV- 78

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2052620785  81 qksSDPLAWLLTLMFFIVIlLLGLYHEWNQGALEW 115
Cdd:MTH00092   79 ---SDFSSLISFFMLMIFI-FFGFYMEWWYGKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH