NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2051110250|tpg|DAD97294|]
View 

MAG TPA: DNA binding protein [Microviridae sp. ct79Q5]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_ORF5 pfam20577
Phage ORF5 protein; This family of proteins is found in bacteriophage such as Bacteriophage ...
 5-73 5.23e-22

Phage ORF5 protein; This family of proteins is found in bacteriophage such as Bacteriophage phiMH2K and Bacteriophage Chp1. Proteins in this family are typically between 81 and 96 amino acids in length. These proteins appear to have a role in phage packaging.


:

Pssm-ID: 466726  Cd Length: 75  Bit Score: 81.47  E-value: 5.23e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2051110250  5 VFSVFDSKLQVFNTPFFSRSAADASRSFSDLVRDGRTTVGQHPDDFFLYEIGQYSDETGELVASAPTQI 73
Cdd:pfam20577  1 LYSIYDSKAEAFGPPFFARNDGEAIRSFKDAVNDPDSLLSKHPEDFDLYRLGTFDDETGVITPLDPPVH 69
 
Name Accession Description Interval E-value
Phage_ORF5 pfam20577
Phage ORF5 protein; This family of proteins is found in bacteriophage such as Bacteriophage ...
 5-73 5.23e-22

Phage ORF5 protein; This family of proteins is found in bacteriophage such as Bacteriophage phiMH2K and Bacteriophage Chp1. Proteins in this family are typically between 81 and 96 amino acids in length. These proteins appear to have a role in phage packaging.


Pssm-ID: 466726  Cd Length: 75  Bit Score: 81.47  E-value: 5.23e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2051110250  5 VFSVFDSKLQVFNTPFFSRSAADASRSFSDLVRDGRTTVGQHPDDFFLYEIGQYSDETGELVASAPTQI 73
Cdd:pfam20577  1 LYSIYDSKAEAFGPPFFARNDGEAIRSFKDAVNDPDSLLSKHPEDFDLYRLGTFDDETGVITPLDPPVH 69
PHA00198 PHA00198
nonstructural protein
 1-66 7.16e-18

nonstructural protein


Pssm-ID: 222780  Cd Length: 86  Bit Score: 71.07  E-value: 7.16e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2051110250  1 MILKVFSVFDSKLQVFNTPFFSRSAADASRSFSDLVRDG--RTTVGQHPDDFFLYEIGQYSDETGELV 66
Cdd:PHA00198   1 MHMKVFSIFDIKTEIYGQPFFMQATGAAIRAFSDMVNDDpsKNQFAAHPEDFDLYEIGSYDDSTGTFI 68
 
Name Accession Description Interval E-value
Phage_ORF5 pfam20577
Phage ORF5 protein; This family of proteins is found in bacteriophage such as Bacteriophage ...
 5-73 5.23e-22

Phage ORF5 protein; This family of proteins is found in bacteriophage such as Bacteriophage phiMH2K and Bacteriophage Chp1. Proteins in this family are typically between 81 and 96 amino acids in length. These proteins appear to have a role in phage packaging.


Pssm-ID: 466726  Cd Length: 75  Bit Score: 81.47  E-value: 5.23e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2051110250  5 VFSVFDSKLQVFNTPFFSRSAADASRSFSDLVRDGRTTVGQHPDDFFLYEIGQYSDETGELVASAPTQI 73
Cdd:pfam20577  1 LYSIYDSKAEAFGPPFFARNDGEAIRSFKDAVNDPDSLLSKHPEDFDLYRLGTFDDETGVITPLDPPVH 69
PHA00198 PHA00198
nonstructural protein
 1-66 7.16e-18

nonstructural protein


Pssm-ID: 222780  Cd Length: 86  Bit Score: 71.07  E-value: 7.16e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2051110250  1 MILKVFSVFDSKLQVFNTPFFSRSAADASRSFSDLVRDG--RTTVGQHPDDFFLYEIGQYSDETGELV 66
Cdd:PHA00198   1 MHMKVFSIFDIKTEIYGQPFFMQATGAAIRAFSDMVNDDpsKNQFAAHPEDFDLYEIGSYDDSTGTFI 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH