|
Name |
Accession |
Description |
Interval |
E-value |
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-2259 |
0e+00 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 2392.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1 MSVSTQLGLLLWKNFTYRRRQTLQLLVEIIWPLLIFFILIAVRLNYPPYEQHECHFPNKAMPSAGTLPWLQGILCNANNP 80
Cdd:TIGR01257 1 MGFLRQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNANPLYSQHECHFPNKAMPSAGMLPWLQGIFCNVNNP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 81 CFRNPTPGESPGVVGNFNGSIISRLFSDTKKILLYSQNDKNLDG----FKELAQALQVLQ-HSQS----GFKLKHFLRED 151
Cdd:TIGR01257 81 CFQSPTPGESPGIVSNYNNSILARVYRDFQELLMDAPESQHLGQvwaeLRTLSQFMDTLRtHPERiagrGIRIRDILKDE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 152 ETLSSFLLRNASFSEHSVQQISEAGINLEKVLLKGFGVHLRDMCPRKGgkwSLGDFVTISDPQVSLLVQEVICQAPPTWL 231
Cdd:TIGR01257 161 EALTLFLMKNIGLSDSVVYLLVNSQVRPEQFAYGVPDLELKDIACSEA---LLERFIIFSQRRGAQTVRDALCSLSQGTL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 232 NHAEEHFLNNADFFK-----PIQRDMTSDPEAVRQVARatnnLLDSLGSLAVELASMKSWIDLrneiIFLTKN--ATSSP 304
Cdd:TIGR01257 238 QWIEDTLYANVDFFKlfhvlPTLLDSRSQGINLRSWGG----ILSDMSPRIQEFIHRPSVQDL----LWVTRPllQNGGP 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 305 SAMYQ---AVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNhNSSEDEPASLYDNSSTPYCNSLMKNMDSNPMSRMIWQ 381
Cdd:TIGR01257 310 ETFTQlmgILSDLLCGYPEGGGSRVFSFNWYEDNNYKAFLGI-DSTRKDPIYSYDKRTTSFCNALIQSLESNPLTKIAWR 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 382 ALKPLLMGKILYTPHTPATQRVIHEVNRTFQELGVFRDLGGMWEEMRPKVWNFMENSEHMDLIRTLLKNNITASFFHAQL 461
Cdd:TIGR01257 389 AAKPLLMGKILFTPDSPAARRILKNANSTFEELERVRKLVKAWEEVGPQIWYFFDKSTQMTMIRDTLQNPTVKDFINRQL 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 462 TDTDWTVADISDFLSK-----QAEDPrppgSVLTWREVFNETDQAIMSISRFMECVNLDKLEPVSSEERLVNQSMLLLED 536
Cdd:TIGR01257 469 GEEGITAEAVLNFLYNgprekQADDM----TNFDWRDIFNITDRFLRLANQYLECLVLDKFESYDDEVQLTQRALSLLEE 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 537 RKFWAGIVFPDVDPNATELPAKLDYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFSYLQDVIEHGIIRAMT 616
Cdd:TIGR01257 545 NRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQM 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 617 GTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIILKSVVYEKEARLKETMRIMGLNNGILWFSWFISS 696
Cdd:TIGR01257 625 QAEPPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDS 704
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 697 LIPLLISAGLLVLLLKKGNLLPYSDPGVVFLFLGSFAVVTIMQCFLLSTAFARANLAAACGGIIYFTLYLPYVLCVAWQD 776
Cdd:TIGR01257 705 FSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQD 784
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 777 YIGFGAKVFASLLSPVAFGFGCEYFALFEEQGVGIQWKNLVSSPLEEDDFSLRTAITIMYFDSFLYGVLTWYIEAVFPGQ 856
Cdd:TIGR01257 785 RMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGD 864
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 857 YGIPRPWYFPFTKSYWFGeNEGKSNKVPLNRKGNAGAVCIEEEPAHLE---------------PGVYIENLVKVYRHGKK 921
Cdd:TIGR01257 865 YGTPLPWYFLLQESYWLG-GEGCSTREERALEKTEPLTEEMEDPEHPEgindsfferelpglvPGVCVKNLVKIFEPSGR 943
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 922 LAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEH 1001
Cdd:TIGR01257 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEH 1023
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1002 IWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL 1081
Cdd:TIGR01257 1024 ILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1082 LLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKeaepslsscrnsSSTVSFTKK 1161
Cdd:TIGR01257 1104 LLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRK------------MKNIQSQRG 1171
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1162 --EGECaSVSSSDAGLGSEHESEAATIENgpaasicdvpFVPPDVSLVSGLILCHVPAARLVEDLRHELTYVLPYSAAKD 1239
Cdd:TIGR01257 1172 gcEGTC-SCTSKGFSTRCPARVDEITPEQ----------VLDGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQ 1240
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1240 GAFVELFKDLDRKLPDLGISSYGVSDTTLEEIFLKVAEDNGVDtevpsdgtlpvqrrrrtHAFGGGDHQS---------C 1310
Cdd:TIGR01257 1241 RAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSG-----------------SLFAGGAQQKrenanlrhpC 1303
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1311 LRPL-----TEDDNNDCneSDGDP-DCRETDWLNCTDGKGSYQVSGWSLKRQQFVALMWKRFLYARRSRKGFFAQIVLPA 1384
Cdd:TIGR01257 1304 SGPTekagqTPQASHTC--SPGQPaAHPEGQPPPEPEDPGVPLNTGARLILQHVQALLVKRFQHTIRSHKDFLAQIVLPA 1381
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1385 VFVCIALVFSLIVPPFGKYPSLELQPWIYEDQVTFISDDAPGDANMLKLLNALLDPPSFGTRCMDGHPIPEAPCtMGDED 1464
Cdd:TIGR01257 1382 TFVFLALMLSIIIPPFGEYPALTLHPWMYGQQYTFFSMDEPNSEHLEVLADVLLNKPGFGNRCLKEEWLPEYPC-GNSTP 1460
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1465 WQTPDVPESVQQLFSSTNWTMENPSPACFCSCGGKKKMLPDCPPGAGGPPPPEMKLSATDTLQNLTGRNISDYLVKTYAQ 1544
Cdd:TIGR01257 1461 WKTPSVSPNITHLFQKQKWTAAHPSPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVKTYPA 1540
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1545 IIGKSLKNKVWVNEFRYGGFSLGARstqvLPPANEIDEA----IERVRRVFELQKGAAADRFLDSLSSFINGLDTKNNVK 1620
Cdd:TIGR01257 1541 LIRSSLKSKFWVNEQRYGGISIGGK----LPAIPITGEAlvgfLSDLGQMMNVSGGPVTREASKEMPDFLKHLETEDNIK 1616
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1621 IWFNNKGWHSIGAFINVMNNGILRAHLPEGSDASKYGISAFNHPLNLTKEQLSQVALVTTSVDVLVSICVIFAMSFVPAS 1700
Cdd:TIGR01257 1617 VWFNNKGWHALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPAS 1696
|
1770 1780 1790 1800 1810 1820 1830 1840
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1701 FVVFLIQERVSKAKHMQFISGVQPLLYWVANFIWDMCNYVVPATLVILIFICFQQKAYVSSTNLPVLALLLLLYGWSITP 1780
Cdd:TIGR01257 1697 FVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIP 1776
|
1850 1860 1870 1880 1890 1900 1910 1920
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1781 LMYPASFFFKIPSTAYVVLTSVNILIGINGSISTFVMELFGNNE-IGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMAD 1859
Cdd:TIGR01257 1777 MMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRtLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTD 1856
|
1930 1940 1950 1960 1970 1980 1990 2000
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1860 ALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFFIkARSVSKLTKlGALGEEDEDVARERQRIVHGLGH 1939
Cdd:TIGR01257 1857 VYAQFGEEHSANPFQWDLIGKNLVAMAVEGVVYFLLTLLIQHHFFL-SRWIAEPAK-EPIFDEDDDVAEERQRIISGGNK 1934
|
2010 2020 2030 2040 2050 2060 2070 2080
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1940 GDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNM 2019
Cdd:TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014
|
2090 2100 2110 2120 2130 2140 2150 2160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFL 2099
Cdd:TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094
|
2170 2180 2190 2200 2210 2220 2230 2240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2100 DEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGP 2179
Cdd:TIGR01257 2095 DEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSP 2174
|
2250 2260 2270 2280 2290 2300 2310 2320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2180 D----PDLSPVMKFIESELSGSTLKEKHRNMLQYQLPSSltSLTHIFSILAKNKETLRIEDYSVTQTTLDQVFVNFAKDQ 2255
Cdd:TIGR01257 2175 KddllPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSS--SLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQ 2252
|
....
gi 2048025527 2256 SDDY 2259
Cdd:TIGR01257 2253 TETY 2256
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
1943-2163 |
3.59e-114 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 361.44 E-value: 3.59e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2103 TTGMDPKARRALWNCIHSViKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLK 2163
Cdd:cd03263 161 TSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
907-1126 |
6.87e-114 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 360.28 E-value: 6.87e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVC 986
Cdd:cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1067 TAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLK 1126
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
909-1143 |
5.77e-89 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 289.66 E-value: 5.77e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQ 988
Cdd:COG1131 3 VRGLTKRY--GDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1069 GVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKEAE 1143
Cdd:COG1131 161 GLDPEARRELWELLRELAaEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARLLEDVFLELTGEEAR 236
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
1943-2166 |
1.78e-80 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 265.39 E-value: 1.78e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:COG1131 1 IEVRGLTKRYGDKT--ALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:COG1131 79 PQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRF 2166
Cdd:COG1131 159 TSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
1958-2251 |
2.57e-68 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 233.05 E-value: 2.57e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1958 PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYCPQFDSINELLTGREH 2037
Cdd:TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2038 LELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNC 2117
Cdd:TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2118 IHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDLSPVMKFIESELSGS 2197
Cdd:TIGR01188 167 IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVSMLIAELGETGL 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2198 TLKEKHRNMLQYQLPSSLTS--LTHIFSILAKNKetLRIEDYSVTQTTLDQVFVNF 2251
Cdd:TIGR01188 247 GLLAVTVDSDRIKILVPDGDetVPEIVEAAIRNG--IRIRSISTERPSLDDVFLKL 300
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
909-1116 |
4.32e-67 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 227.43 E-value: 4.32e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQ 988
Cdd:COG4555 4 VENLSKKY--GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:COG4555 82 ERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTN 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2048025527 1069 GVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG4555 162 GLDVMARRLLREILRALKkEGKTVLFSSHIMQEVEALCDRVVILHKGKV 210
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
909-1116 |
3.32e-65 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 218.81 E-value: 3.32e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQ 988
Cdd:cd03230 3 VRNLSKRY--GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWfygrlkglseqqvkgeieqilqdtglphkrssrtsaLSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:cd03230 81 EPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTS 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2048025527 1069 GVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03230 125 GLDPESRREFWELLRELKkEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
909-1126 |
1.30e-64 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 219.16 E-value: 1.30e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQ 988
Cdd:cd03265 3 VENLVKKY--GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1069 GVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLK 1126
Cdd:cd03265 161 GLDPQTRAHVWEYIekLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
1943-2163 |
2.29e-63 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 215.70 E-value: 2.29e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:cd03265 1 IEVENLVKKYG--DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLK 2163
Cdd:cd03265 159 TIGLDPQTRAHVWEYIEKLKEEfGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
914-1130 |
7.37e-63 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 217.64 E-value: 7.37e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 914 KVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQHNVLF 993
Cdd:TIGR01188 1 KVY--GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 SMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPY 1073
Cdd:TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1074 ARRGIWDLLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLG 1130
Cdd:TIGR01188 159 TRRAIWDYIRALKEeGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG 216
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1943-2168 |
3.28e-58 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 201.62 E-value: 3.28e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:COG4555 2 IEVENLSKKYG--KVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:COG4555 80 PDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGD 2168
Cdd:COG4555 160 TNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGE 225
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
1943-2153 |
3.68e-58 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 198.78 E-value: 3.68e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKqkPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLElyavlrgipekevcdvaewgirklglvkyadkaagsYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:cd03230 79 PEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEP 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:cd03230 123 TSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
909-1116 |
7.17e-55 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 190.87 E-value: 7.17e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKklAVDGLTLGFYEGqITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQ 988
Cdd:cd03264 3 LENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2048025527 1069 GVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03264 160 GLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKL 207
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
909-1115 |
4.87e-52 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 182.67 E-value: 4.87e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQSLGVCP 987
Cdd:cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLsLKELRRKVGLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QH-NVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:cd03225 82 QNpDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1067 TAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:cd03225 162 TAGLDPAGRRELLELLKKLkAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
909-1121 |
3.51e-51 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 180.99 E-value: 3.51e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQSLGVCP 987
Cdd:COG1122 3 LENLSFSYPGGTP-ALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKnLRELRRKVGLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QH--NVLFsMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDE 1065
Cdd:COG1122 82 QNpdDQLF-APTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1066 PTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:COG1122 161 PTAGLDPRGRRELLELLKRLnKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGT 217
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
909-1134 |
5.27e-51 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 183.00 E-value: 5.27e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKvyRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSElsaIRQSLGVCPQ 988
Cdd:COG4152 4 LKGLTK--RFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPE---DRRRIGYLPE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:COG4152 79 ERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1069 GVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYY 1134
Cdd:COG4152 159 GLDPVNVELLKDVIRELAaKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNTL 225
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
907-1120 |
5.53e-49 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 174.48 E-value: 5.53e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHGKK--LAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLG 984
Cdd:cd03266 2 ITADALTKRFRDVKKtvQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 985 VCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILD 1064
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1065 EPTAGVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRaLGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1942-2157 |
1.17e-47 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 170.63 E-value: 1.17e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKP--AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNM 2019
Cdd:cd03266 1 MITADALTKRFRDVKKTvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFL 2099
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2100 DEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLG 2157
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
909-1116 |
2.29e-47 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 169.32 E-value: 2.29e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQsLGVCPQ 988
Cdd:cd03268 3 TNDLTKTY--GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR-IGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWFYGRLKGLSEQqvkgEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:cd03268 80 APGFYPNLTARENLRLLARLLGIRKK----RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2048025527 1069 GVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03268 156 GLDPDGIKELRELILSLRdQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1942-2199 |
7.30e-46 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 168.45 E-value: 7.30e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGY 2021
Cdd:PRK13537 7 PIDFRNVEKRYG--DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2022 CPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDE 2101
Cdd:PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2102 PTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL-KNRFGdgyTIILRVAGPD 2180
Cdd:PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALiESEIG---CDVIEIYGPD 241
|
250 260
....*....|....*....|....
gi 2048025527 2181 PD-----LSPVMKfiESELSGSTL 2199
Cdd:PRK13537 242 PValrdeLAPLAE--RTEISGETL 263
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
1943-2152 |
1.39e-45 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 164.31 E-value: 1.39e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIdEVHQNMGYC 2022
Cdd:cd03268 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNI-EALRRIGAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVCDVaewgIRKLGLVKYADKAAGSYSGGnMR-KLSTAMALIGAPPVVFLDE 2101
Cdd:cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEV----LDVVGLKDSAKKKVKGFSLG-MKqRLGIALALLGNPDLLILDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2102 PTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
907-1115 |
7.50e-45 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 162.06 E-value: 7.50e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKdirSELSAIRQSLGVC 986
Cdd:cd03269 1 LEVENVTKRF--GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK---PLDIAARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1067 TAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:cd03269 156 FSGLDPVNVELLKDVIRELaRAGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
1943-2154 |
9.14e-45 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 161.98 E-value: 9.14e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGeCFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:cd03264 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2103 TTGMDPKARRALWNCIhSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFR 2154
Cdd:cd03264 158 TAGLDPEERIRFRNLL-SELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
909-1121 |
1.37e-44 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 162.29 E-value: 1.37e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQSLG 984
Cdd:cd03261 3 LRGLTKSF--GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIsglsEAELYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 985 VCPQHNVLFSMLTVEEHIWFYGRLKG-LSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVIL 1063
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTrLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1064 DEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKelGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
904-1121 |
2.24e-44 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 162.07 E-value: 2.24e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAI 979
Cdd:COG1127 3 EPMIEVRNLTKSF--GDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDItglsEKELYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 980 RQSLGVCPQHNVLFSMLTVEEHIWFYGR-LKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGS 1058
Cdd:COG1127 81 RRRIGMLFQGGALFDSLTVFENVAFPLReHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:COG1127 161 EILLYDEPTAGLDPITSAVIDELIRELRDelGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGT 225
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1942-2257 |
3.31e-44 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 163.36 E-value: 3.31e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILReidEVHQNMGY 2021
Cdd:COG4152 1 MLELKGLTKRFGDKT--AVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDP---EDRRRIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2022 CPqfdsinE---L---LTGREHLELYAVLRGIPEKEVCD-VAEWgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAP 2094
Cdd:COG4152 76 LP------EergLypkMKVGEQLVYLARLKGLSKAEAKRrADEW-LERLGLGDRANKKVEELSKGNQQKVQLIAALLHDP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2095 PVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGdGYTIIL 2174
Cdd:COG4152 149 ELLILDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFG-RNTLRL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2175 RVAGPDPDLspvmkfieSELSGSTLKEKHRNMLQYQLPSSlTSLTHIFSILAKNKEtlrIEDYSVTQTTLDQVFVNFAKD 2254
Cdd:COG4152 228 EADGDAGWL--------RALPGVTVVEEDGDGAELKLEDG-ADAQELLRALLARGP---VREFEEVRPSLNEIFIEVVGE 295
|
...
gi 2048025527 2255 QSD 2257
Cdd:COG4152 296 KAE 298
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
917-1115 |
7.53e-44 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 162.67 E-value: 7.53e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSML 996
Cdd:PRK13537 16 RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 997 TVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARR 1076
Cdd:PRK13537 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2048025527 1077 GIWDLLLK-YRQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:PRK13537 176 LMWERLRSlLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
924-1068 |
1.09e-43 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 156.27 E-value: 1.09e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 924 VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFSMLTVEEHI 1002
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDdERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1003 WFYGRLKGLSEQQVKGEIEQILQDTGLPHKR----SSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLAdrpvGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
909-1116 |
1.20e-43 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 158.84 E-value: 1.20e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQSLGVCPQ 988
Cdd:cd03259 3 LKGLSKTY--GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV-TGVPPERRNIGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1069 GVDPYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03259 160 ALDAKLREELREELKELqrELGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
907-1116 |
3.78e-43 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 157.65 E-value: 3.78e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHG--KKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIR 980
Cdd:cd03255 1 IELKNLSKTYGGGgeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIsklsEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 981 -QSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSK 1059
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1060 VVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADiLGDRIAIISHGKL 1116
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKeaGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
909-1121 |
1.22e-42 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 157.08 E-value: 1.22e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQSLGVCP 987
Cdd:cd03295 3 FENVTKRYGGGKK-AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQdPVELRRKIGYVI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLP--HKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDE 1065
Cdd:cd03295 82 QQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDpaEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1066 PTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:cd03295 162 PFGALDPITRDQLQEEFKRLQQelGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
880-1115 |
2.02e-42 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 159.61 E-value: 2.02e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 880 SNKVPLNRKGNAGAVCIEEEPAHLEPgVYIE--NLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGL 957
Cdd:PRK13536 14 LELSPIERKHQGISEAKASIPGSMST-VAIDlaGVSKSY--GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 958 FPPTSGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRT 1037
Cdd:PRK13536 91 TSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1038 SALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK-YRQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:PRK13536 171 SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSlLARGKTILLTTHFMEEAERLCDRLCVLEAGR 249
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
909-1108 |
3.22e-42 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 154.56 E-value: 3.22e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQ 988
Cdd:COG4133 5 AENLSCRR--GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLGH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWFYGRLKGLSeqQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:COG4133 83 ADGLKPELTVRENLRFWAALYGLR--ADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFT 160
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2048025527 1069 GVDPYARRGIWDLLLKYR-QGRTIILSTHhmDEADILGDRI 1108
Cdd:COG4133 161 ALDAAGVALLAELIAAHLaRGGAVLLTTH--QPLELAAARV 199
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
909-1112 |
8.72e-42 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 153.78 E-value: 8.72e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGK--KLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIrqslGVC 986
Cdd:cd03293 3 VRNVSKTYGGGGgaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDR----GYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:cd03293 79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2048025527 1067 TAGVDPYARRGIWDLLLK--YRQGRTIILSTHHMDEADILGDRIAIIS 1112
Cdd:cd03293 159 FSALDALTREQLQEELLDiwRETGKTVLLVTHDIDEAVFLADRVVVLS 206
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1943-2133 |
1.03e-41 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 153.02 E-value: 1.03e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVfkRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:COG4133 3 LEAENLSCR--RGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVcDVAEWgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:COG4133 81 GHADGLKPELTVRENLRFWAALYGLRADRE-AIDEA-LEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEP 158
|
170 180 190
....*....|....*....|....*....|.
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSH 2133
Cdd:COG4133 159 FTALDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
904-1114 |
1.41e-40 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 151.78 E-value: 1.41e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYRH--GKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRselsAIRQ 981
Cdd:COG1116 5 APALELRGVSKRFPTggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVT----GPGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:COG1116 81 DRGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1062 ILDEPTAGVDPYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHG 1114
Cdd:COG1116 161 LMDEPFGALDALTRERLQDELLRLwqETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
904-1116 |
1.56e-40 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 150.19 E-value: 1.56e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYRHGKKL--AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELS 977
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGEvtALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDIsslsERELA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIR-QSLGVCPQ-HNvLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFV 1055
Cdd:COG1136 82 RLRrRHIGFVFQfFN-LLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLLLKY--RQGRTIILSTHHMDEADIlGDRIAIISHGKL 1116
Cdd:COG1136 161 NRPKLILADEPTGNLDSKTGEEVLELLRELnrELGTTIVMVTHDPELAAR-ADRVIRLRDGRI 222
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
909-1121 |
3.45e-40 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 149.51 E-value: 3.45e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKvyRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCP- 987
Cdd:cd03219 3 VRGLTK--RFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRt 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 -QHNVLFSMLTVEE------------HIWFYGRLKglSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAF 1054
Cdd:cd03219 81 fQIPRLFPELTVLEnvmvaaqartgsGLLLARARR--EEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1055 VGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRErGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
909-1115 |
4.15e-40 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 146.62 E-value: 4.15e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI-RSELSAIRQSLGVCP 987
Cdd:cd00267 2 IENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIaKLPLEELRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QhnvlfsmltveehiwfygrlkglseqqvkgeieqilqdtglphkrssrtsaLSGGMQRKLSVALAFVGGSKVVILDEPT 1067
Cdd:cd00267 80 Q---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPT 108
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2048025527 1068 AGVDPYARRGIWDLLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:cd00267 109 SGLDPASRERLLELLRELAEeGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
1943-2157 |
5.43e-39 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 145.12 E-value: 5.43e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlreIDEVHQNMGYC 2022
Cdd:cd03269 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL---DIAARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVC-DVAEWgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDE 2101
Cdd:cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARrRIDEW-LERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2102 PTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLG 2157
Cdd:cd03269 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
909-1117 |
6.45e-39 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 145.37 E-value: 6.45e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVkvYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIrqslGVCPQ 988
Cdd:cd03235 2 VEDLT--VSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI----GYVPQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 H-NVLFSM-LTVEE--------HIWFYGRLKglseQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGS 1058
Cdd:cd03235 76 RrSIDRDFpISVRDvvlmglygHKGLFRRLS----KADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKLC 1117
Cdd:cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRReGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1943-2199 |
8.33e-39 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 149.21 E-value: 8.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:PRK13536 42 IDLAGVSKSYG--DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL-KNRFGdgyTIILRVAGPDP 2181
Cdd:PRK13536 200 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALiDEHIG---CQVIEIYGGDP 276
|
250 260
....*....|....*....|...
gi 2048025527 2182 D-----LSPVMKFIesELSGSTL 2199
Cdd:PRK13536 277 HelsslVKPYARRI--EVSGETL 297
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
909-1121 |
2.05e-38 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 145.19 E-value: 2.05e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVkvYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSA--IRQSLGVC 986
Cdd:COG1120 4 AENLS--VGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDL-ASLSRreLARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEE--------HIwfyGRLKGLSEQQVKgEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGS 1058
Cdd:COG1120 81 PQEPPAPFGLTVRElvalgrypHL---GLFGRPSAEDRE-AVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:COG1120 157 PLLLLDEPTSHLDLAHQLEVLELLrrLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGP 221
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
909-1122 |
2.90e-38 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 151.98 E-value: 2.90e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVY---RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQ 981
Cdd:COG1123 263 VRNLSKRYpvrGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLtklsRRSLRELRR 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGVCPQH--NVLFSMLTVEEHIWF-YGRLKGLSEQQVKGEIEQILQDTGLPHK-RSSRTSALSGGMQRKLSVALAFVGG 1057
Cdd:COG1123 343 RVQMVFQDpySSLNPRMTVGDIIAEpLRLHGLLSRAERRERVAELLERVGLPPDlADRYPHELSGGQRQRVAIARALALE 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1058 SKVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSS 1122
Cdd:COG1123 423 PKLLILDEPTSALDVSVQAQILNLLRDLQRelGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPT 489
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
909-1116 |
3.26e-38 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 143.88 E-value: 3.26e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVY--RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQS 982
Cdd:cd03258 4 LKNVSKVFgdTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLtllsGKELRKARRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVI 1062
Cdd:cd03258 84 IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1063 LDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03258 164 CDEATSALDPETTQSILALLRDINRelGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
909-1115 |
9.62e-38 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 140.40 E-value: 9.62e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI---RSELSAIRQSLGV 985
Cdd:cd03229 3 LKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdlEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQHNVLFSMLTVEEHIWFygrlkglseqqvkgeieqilqdtglphkrssrtsALSGGMQRKLSVALAFVGGSKVVILDE 1065
Cdd:cd03229 81 VFQDFALFPHLTVLENIAL----------------------------------GLSGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1066 PTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:cd03229 127 PTSALDPITRREVRALLksLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
884-1115 |
1.22e-37 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 154.90 E-value: 1.22e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 884 PLNRKGNAGAVCIEEEPAHLEPGVYIE--NLVKvyRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT 961
Cdd:NF033858 242 PEEKRRGHQPVVIPPRPADDDDEPAIEarGLTM--RFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPAS 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 962 SGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALS 1041
Cdd:NF033858 320 EGEAWLFGQPVDAGDIATRRRVGYMSQAFSLYGELTVRQNLELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLP 399
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1042 GGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADiLGDRIAIISHGK 1115
Cdd:NF033858 400 LGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLieLSREDGVTIFISTHFMNEAE-RCDRISLMHAGR 474
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
909-1135 |
1.43e-37 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 141.91 E-value: 1.43e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVC-- 986
Cdd:cd03218 3 AENLSKRY--GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGyl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1067 TAGVDPYARRGIWDLLLKYRQgRTI-ILST-HHMDEADILGDRIAIISHGKLCCVGSSLYL-KNQLGTGYYL 1135
Cdd:cd03218 161 FAGVDPIAVQDIQKIIKILKD-RGIgVLITdHNVRETLSITDRAYIIYEGKVLAEGTPEEIaANELVRKVYL 231
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
909-1127 |
3.35e-37 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 141.26 E-value: 3.35e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGV--C 986
Cdd:TIGR04406 4 AENLIKSY--KKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIgyL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIW-FYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDE 1065
Cdd:TIGR04406 82 PQEASIFRKLTVEENIMaVLEIRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1066 PTAGVDPYARRGIWDLLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKN 1127
Cdd:TIGR04406 162 PFAGVDPIAVGDIKKIIKHLKErGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVA 224
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
904-1118 |
6.12e-37 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 140.61 E-value: 6.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVkvYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSElsaiRQSL 983
Cdd:COG1121 4 MPAIELENLT--VSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRA----RRRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 984 GVCPQH-NVLFSM-LTVEE--------HIWFYGRLKglseQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALA 1053
Cdd:COG1121 78 GYVPQRaEVDWDFpITVRDvvlmgrygRRGLFRRPS----RADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1054 FVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKLCC 1118
Cdd:COG1121 154 LAQDPDLLLLDEPFAGVDAATEEALYELLRELRrEGKTILVVTHDLGAVREYFDRVLLLNRGLVAH 219
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1944-2152 |
2.74e-36 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 137.60 E-value: 2.74e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1944 ELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL-REIDEVHQNMGYC 2022
Cdd:cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTkLSLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQF-DS-------INELLTGREHLelyavlrGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAP 2094
Cdd:cd03225 81 FQNpDDqffgptvEEEVAFGLENL-------GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2095 PVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
907-1115 |
6.12e-36 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 135.20 E-value: 6.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGV 985
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQHNVLFSMlTVEEHIwfygrlkglseqqvkgeieqilqdtglphkrssrtsaLSGGMQRKLSVALAFVGGSKVVILDE 1065
Cdd:cd03228 81 VPQDPFLFSG-TIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1066 PTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADiLGDRIAIISHGK 1115
Cdd:cd03228 123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
909-1116 |
9.09e-36 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 137.48 E-value: 9.09e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKvyRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCP- 987
Cdd:COG0411 7 VRGLTK--RFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLGIARt 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 -QHNVLFSMLTVEEHI---------------WFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVA 1051
Cdd:COG0411 85 fQNPRLFPELTVLENVlvaaharlgrgllaaLLRLPRARREEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1052 LAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR--QGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG0411 165 RALATEPKLLLLDEPAAGLNPEETEELAELIRRLRdeRGITILLIEHDMDLVMGLADRIVVLDFGRV 231
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
909-1116 |
9.76e-36 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 136.34 E-value: 9.76e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKlAVDGLTLGFYEGQITsFL-GHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQSL 983
Cdd:COG2884 4 FENVSKRYPGGRE-ALSDVSLEIEKGEFV-FLtGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLsrlkRREIPYLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 984 GVCPQ-HNVLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVI 1062
Cdd:COG2884 82 GVVFQdFRLLPDR-TVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1063 LDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG2884 161 ADEPTGNLDPETSWEIMELLEEInRRGTTVLIATHDLELVDRMPKRVLELEDGRL 215
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1942-2247 |
1.26e-35 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 139.45 E-value: 1.26e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKP-------------------AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGdTLV-TSGEA 2001
Cdd:COG4586 1 IIEVENLSKTYRVYEKEpglkgalkglfrreyreveAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTG-ILVpTSGEV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2002 FLAG-------KSILREIDEVhqnMGycpQ-----FDsinelLTGREHLELYAVLRGIPEKEvcdvaewgIRK------- 2062
Cdd:COG4586 80 RVLGyvpfkrrKEFARRIGVV---FG---QrsqlwWD-----LPAIDSFRLLKAIYRIPDAE--------YKKrldelve 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2063 -LGLVKYADKAAgsysggnmRKLS--------TAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTS 2132
Cdd:COG4586 141 lLDLGELLDTPV--------RQLSlgqrmrceLAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRErGTTILLTS 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2133 HSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDLspvmkfiesELS-GSTLKEKHRNMLQYQL 2211
Cdd:COG4586 213 HDMDDIEALCDRVIVIDHGRIIYDGSLEELKERFGPYKTIVLELAEPVPPL---------ELPrGGEVIEREGNRVRLEV 283
|
330 340 350
....*....|....*....|....*....|....*.
gi 2048025527 2212 PSSlTSLTHIFSILAKNKEtlrIEDYSVTQTTLDQV 2247
Cdd:COG4586 284 DPR-ESLAEVLARLLARYP---VRDLTIEEPPIEEV 315
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
1943-2152 |
2.31e-35 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 135.54 E-value: 2.31e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFkRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGdtLV--TSGEAFLAGKSILRE-IDEVHQNM 2019
Cdd:COG1122 1 IELENLSFSY-PGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNG--LLkpTSGEVLVDGKDITKKnLRELRRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQF-DS-------INELLTGREHLelyavlrGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALI 2091
Cdd:COG1122 78 GLVFQNpDDqlfaptvEEDVAFGPENL-------GLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2092 GAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG1122 151 MEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGR 211
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
909-1115 |
2.23e-34 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 133.08 E-value: 2.23e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQSLG 984
Cdd:cd03256 3 VENLSKTYPNGKK-ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDInklkGKALRQLRRQIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 985 VCPQH-----------NVLFSMLTveEHIWFYGRLKGLSEQQVKGEIEqILQDTGLPHKRSSRTSALSGGMQRKLSVALA 1053
Cdd:cd03256 82 MIFQQfnlierlsvleNVLSGRLG--RRSTWRSLFGLFPKEEKQRALA-ALERVGLLDKAYQRADQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 1054 FVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINReeGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1944-2152 |
2.28e-34 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 130.06 E-value: 2.28e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1944 ELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR-EIDEVHQNMGYC 2022
Cdd:cd00267 1 EIENLSFRYG--GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKlPLEELRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFdsinelltgrehlelyavlrgipekevcdvaewgirklglvkyadkaagsySGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:cd00267 79 PQL---------------------------------------------------SGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd00267 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
909-1122 |
2.41e-34 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 132.85 E-value: 2.41e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI-------RSelsaiRQ 981
Cdd:COG1137 6 AENLVKSY--GKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDIthlpmhkRA-----RL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:COG1137 79 GIGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFI 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1062 ILDEPTAGVDPYARRGIWDLLLKYRQgRTI-ILST-HHMDEadILG--DRIAIISHGKLCCVGSS 1122
Cdd:COG1137 159 LLDEPFAGVDPIAVADIQKIIRHLKE-RGIgVLITdHNVRE--TLGicDRAYIISEGKVLAEGTP 220
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
904-1116 |
2.48e-34 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 140.42 E-value: 2.48e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT---SGTAYILGKDIRSELSAIR 980
Cdd:COG1123 2 TPLLEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 981 -QSLGVCPQH-NVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGS 1058
Cdd:COG1123 82 gRRIGMVFQDpMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG1123 162 DLLIADEPTTALDVTTQAEILDLLreLQRERGTTVLLITHDLGVVAEIADRVVVMDDGRI 221
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
909-1116 |
4.68e-34 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 131.86 E-value: 4.68e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKL--AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQS 982
Cdd:cd03257 4 VKNLSVSFPTGGGSvkALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLlklsRRLRKIRRKE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQhNVLFSM---LTVEEHI----WFYGRLKGLSEQQVKgeIEQILQDTGLPHKRSSR-TSALSGGMQRKLSVALAF 1054
Cdd:cd03257 84 IQMVFQ-DPMSSLnprMTIGEQIaeplRIHGKLSKKEARKEA--VLLLLVGVGLPEEVLNRyPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 1055 VGGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLkkLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
907-1121 |
5.27e-34 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 131.59 E-value: 5.27e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQSLGVC 986
Cdd:cd03300 1 IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI-TNLPPHKRPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1067 TAGVDPYARRgiwDLLLKYRQ-----GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:cd03300 158 LGALDLKLRK---DMQLELKRlqkelGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
909-1115 |
5.50e-34 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 131.40 E-value: 5.50e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGV--C 986
Cdd:cd03224 3 VENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIgyV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIwfygRL--KGLSEQQVKGEIEQILQD-TGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVIL 1063
Cdd:cd03224 81 PEGRRIFPELTVEENL----LLgaYARRRAKRKARLERVYELfPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1064 DEPTAGVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:cd03224 157 DEPSEGLAPKIVEEIFEAIRELRdEGVTILLVEQNARFALEIADRAYVLERGR 209
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
909-1116 |
6.42e-34 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 131.15 E-value: 6.42e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFP-----PTSGTAYILGKDIRS---ELSAIR 980
Cdd:cd03260 3 LRDLNVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDIYDldvDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 981 QSLGVCPQHNVLFSMlTVEEHIWFYGRLKG-LSEQQVKGEIEQILQDTGLPHKRSSRTSA--LSGGMQRKLSVALAFVGG 1057
Cdd:cd03260 81 RRVGMVFQKPNPFPG-SIYDNVAYGLRLHGiKLKEELDERVEEALRKAALWDEVKDRLHAlgLSGGQQQRLCLARALANE 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1058 SKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
910-1116 |
5.53e-33 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 128.29 E-value: 5.53e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLVKVYRHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQSLGV 985
Cdd:cd03292 4 INVTKTYPNGTA-ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsdlrGRAIPYLRRKIGV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDE 1065
Cdd:cd03292 83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1066 PTAGVDPYARRGIWDLLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03292 163 PTGNLDPDTTWEIMNLLKKINKaGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1942-2161 |
6.36e-33 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 129.05 E-value: 6.36e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSilreIDEVHQNMGY 2021
Cdd:COG1121 6 AIELENLT--VSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKP----PRRARRRIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2022 CPQFDSINEL--LTGREHLELYAV----LRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPP 2095
Cdd:COG1121 80 VPQRAEVDWDfpITVRDVVLMGRYgrrgLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPD 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2096 VVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRmAIMVNGRFRCLGSVQH 2161
Cdd:COG1121 160 LLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDR-VLLLNRGLVAHGPPEE 224
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
897-1135 |
7.23e-33 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 136.82 E-value: 7.23e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 897 EEEPAHLEPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-E 975
Cdd:COG4987 324 EPAPAPGGPSLELEDVSFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDlD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 976 LSAIRQSLGVCPQHNVLFSMlTVEEHIwfygRL--KGLSEQqvkgEIEQILQDTGL-------PHKRSSRT----SALSG 1042
Cdd:COG4987 404 EDDLRRRIAVVPQRPHLFDT-TLRENL----RLarPDATDE----ELWAALERVGLgdwlaalPDGLDTWLgeggRRLSG 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1043 GMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADiLGDRIAIISHGKLCCVGSS 1122
Cdd:COG4987 475 GERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLE-RMDRILVLEDGRIVEQGTH 553
|
250
....*....|...
gi 2048025527 1123 LYLKNQLGTGYYL 1135
Cdd:COG4987 554 EELLAQNGRYRQL 566
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
909-1120 |
1.40e-32 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 125.63 E-value: 1.40e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVkvYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCP 987
Cdd:cd03214 2 VENLS--VGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASlSPKELARKIAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QhnvlfsmltveehiwfygrlkglseqqvkgeieqILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPT 1067
Cdd:cd03214 80 Q----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1068 AGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:cd03214 126 SHLDIAHQIELLELLrrLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
917-1120 |
2.70e-32 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 128.14 E-value: 2.70e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIR-QSLGVCPQHNV 991
Cdd:cd03294 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIaamsRKELRELRrKKISMVFQSFA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 992 LFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVD 1071
Cdd:cd03294 113 LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1072 PYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:cd03294 193 PLIRREMQDELLRLqaELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
923-1101 |
4.49e-32 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 124.84 E-value: 4.49e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI---RSELSAIRQSLGVCPQH--NVLFSMlT 997
Cdd:TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLdysRKGLLERRQRVGLVFQDpdDQLFAA-D 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 998 VEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRG 1077
Cdd:TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165
|
170 180
....*....|....*....|....*
gi 2048025527 1078 IWDLLLKYR-QGRTIILSTHHMDEA 1101
Cdd:TIGR01166 166 MLAILRRLRaEGMTVVISTHDVDLA 190
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
1943-2164 |
6.12e-32 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 126.01 E-value: 6.12e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVF---KrkqkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREidEVHQ-- 2017
Cdd:cd03219 1 LEVRGLTKRFgglV-----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL--PPHEia 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2018 NMGYCPQFDSINEL--LTGREHLELYAVLRGIP----------EKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLS 2085
Cdd:cd03219 74 RLGIGRTFQIPRLFpeLTVLENVMVAAQARTGSglllararreEREARERAEELLERVGLADLADRPAGELSYGQQRRLE 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2086 TAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2164
Cdd:cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1942-2160 |
6.74e-32 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 126.31 E-value: 6.74e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlREID--EVHQNM 2019
Cdd:COG1120 1 MLEAENLS--VGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDL-ASLSrrELARRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQFDSINELLTGREhlelyAVLRG---------IPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMAL 2090
Cdd:COG1120 78 AYVPQEPPAPFGLTVRE-----LVALGryphlglfgRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARAL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2091 IGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQ 2160
Cdd:COG1120 153 AQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARErGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPE 223
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
904-1121 |
2.30e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 125.49 E-value: 2.30e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQS 982
Cdd:PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEnLKEIRKK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQH-NVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:PRK13632 85 IGIIFQNpDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1062 ILDEPTAGVDPYARRGIWDLLLKYRQGR--TIILSTHHMDEAdILGDRIAIISHGKLCCVGS 1121
Cdd:PRK13632 165 IFDESTSMLDPKGKREIKKIMVDLRKTRkkTLISITHDMDEA-ILADKVIVFSEGKLIAQGK 225
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
1943-2164 |
3.16e-31 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 123.81 E-value: 3.16e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILReiDEVHQ----N 2018
Cdd:cd03218 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITK--LPMHKrarlG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2019 MGYCPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVF 2098
Cdd:cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2099 LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2164
Cdd:cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
909-1121 |
3.32e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 125.55 E-value: 3.32e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHG---KKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE---LSAIRQS 982
Cdd:PRK13637 5 IENLTHIYMEGtpfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKkvkLSDIRKK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVC---PQHNvLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSA--LSGGMQRKLSVALAFVGG 1057
Cdd:PRK13637 85 VGLVfqyPEYQ-LFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPfeLSGGQKRRVAIAGVVAME 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1058 SKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK13637 163 PKILILDEPTAGLDPKGRDEILNKIkeLHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
909-1120 |
8.39e-31 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 122.44 E-value: 8.39e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhgKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQSLGVCPQ 988
Cdd:cd03299 3 VENLSKDW---KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI-TNLPPEKRDISYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPH--KRSSRTsaLSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHllNRKPET--LSGGEQQRVAIARALVVNPKILLLDEP 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1067 TAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:cd03299 157 FSALDVRTKEKLREELKKIRKefGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1942-2152 |
9.25e-31 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 123.23 E-value: 9.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVF---KrkqkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR----EIde 2014
Cdd:COG0411 4 LLEVRGLTKRFgglV-----AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGlpphRI-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 VH-------QNMGYCPQFDSINELLTGREHLELYAVLRGI--------PEKEVCDVAEWGIRKLGLVKYADKAAGSYSGG 2079
Cdd:COG0411 77 ARlgiartfQNPRLFPELTVLENVLVAAHARLGRGLLAALlrlprarrEEREARERAEELLERVGLADRADEPAGNLSYG 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2080 NMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG0411 157 QQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDErGITILLIEHDMDLVMGLADRIVVLDFGR 230
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
1618-1898 |
1.53e-30 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 125.19 E-value: 1.53e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1618 NVKIWFNNKGWHSIGAFINVMNNGILRAHLPEGSDASKYGISAFNHPLNLTKEQLSQvalvTTSVDVLVSICVIFAMSFV 1697
Cdd:pfam12698 100 TVTVYINSSNLLVSKLILNALQSLLQQLNASALVLLLEALSTSAPIPVESTPLFNPQ----SGYAYYLVGLILMIIILIG 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1698 PASFVVFLIQERVSKAKHMQFISGVQPLLYWVANFIWDMCNYVVPatLVILIFICFQqkAYVSSTNLPVLALLLLLYGWS 1777
Cdd:pfam12698 176 AAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGDFLVGLLQ--LLIILLLLFG--IGIPFGNLGLLLLLFLLYGLA 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1778 ITPLMYPASFFFKIPSTAYVVLTSVNILIGInGSISTFVMElfgnneigGINDILKNVLLIFPHFCLGRGLIDMVKNQAM 1857
Cdd:pfam12698 252 YIALGYLLGSLFKNSEDAQSIIGIVILLLSG-FFGGLFPLE--------DPPSFLQWIFSIIPFFSPIDGLLRLIYGDSL 322
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2048025527 1858 ADalerfgenrfrsplewdmVGKNLFAMAVEGVVFFIITVL 1898
Cdd:pfam12698 323 WE------------------IAPSLIILLLFAVVLLLLALL 345
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
907-1120 |
2.94e-30 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 120.44 E-value: 2.94e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQSLGVC 986
Cdd:cd03301 1 VELENVTKRF--GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV-TDLPPKDRDIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1067 TAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:cd03301 158 LSNLDAKLRVQMRAELkrLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
899-1142 |
3.02e-30 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 129.95 E-value: 3.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 899 EPAHLEPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELS 977
Cdd:COG2274 466 SLPRLKGDIELENVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiDPA 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIRQSLGVCPQHNVLFSMlTVEEHIWFyGRlKGLSEQqvkgEIEQILQDTG-------LPHKR----SSRTSALSGGMQR 1046
Cdd:COG2274 546 SLRRQIGVVLQDVFLFSG-TIRENITL-GD-PDATDE----EIIEAARLAGlhdfieaLPMGYdtvvGEGGSNLSGGQRQ 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1047 KLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTH---HMDEAdilgDRIAIISHGKLCCVGSSL 1123
Cdd:COG2274 619 RLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHrlsTIRLA----DRIIVLDKGRIVEDGTHE 694
|
250
....*....|....*....
gi 2048025527 1124 YLKNQlgTGYYLTLVKKEA 1142
Cdd:COG2274 695 ELLAR--KGLYAELVQQQL 711
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
897-1121 |
3.67e-30 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 128.34 E-value: 3.67e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 897 EEEPAHLEPGVYIENLVkVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-E 975
Cdd:COG4988 327 APLPAAGPPSIELEDVS-FSYPGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDlD 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 976 LSAIRQSLGVCPQHNVLFSMlTVEEHIWFYGRlkGLSEQqvkgEIEQILQDTG-------LPHK-------RSSRtsaLS 1041
Cdd:COG4988 406 PASWRRQIAWVPQNPYLFAG-TIRENLRLGRP--DASDE----ELEAALEAAGldefvaaLPDGldtplgeGGRG---LS 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1042 GG-MQRkLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADiLGDRIAIISHGKLCCVG 1120
Cdd:COG4988 476 GGqAQR-LALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLALLA-QADRILVLDDGRIVEQG 553
|
.
gi 2048025527 1121 S 1121
Cdd:COG4988 554 T 554
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
904-1121 |
7.74e-30 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 126.29 E-value: 7.74e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK--DIRSELSAIRQ 981
Cdd:COG3845 3 PPALELRGITKRF--GGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvRIRSPRDAIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGVCPQHNVLFSMLTVEEHIWFY---GRLKGLSEQQVKGEIEQILQDTGL---PHKrssRTSALSGGMQRKLSVALAFV 1055
Cdd:COG3845 81 GIGMVHQHFMLVPNLTVAENIVLGlepTKGGRLDRKAARARIRELSERYGLdvdPDA---KVEDLSVGEQQRVEILKALY 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKLccVGS 1121
Cdd:COG3845 158 RGARILILDEPTAVLTPQEADELFEILRRLAaEGKSIIFITHKLREVMAIADRVTVLRRGKV--VGT 222
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
1967-2104 |
1.31e-29 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 116.21 E-value: 1.31e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL-REIDEVHQNMGYCPQFDSINELLTGREHLELYAVLR 2045
Cdd:pfam00005 8 LNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTdDERKSLRKEIGYVFQDPQLFPRLTVRENLRLGLLLK 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2046 GIPEKEVCDVAEWGIRKLGLVKYADKAAG----SYSGGNMRKLSTAMALIGAPPVVFLDEPTT 2104
Cdd:pfam00005 88 GLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
909-1116 |
3.08e-29 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 120.95 E-value: 3.08e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKK--LAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQS 982
Cdd:COG1135 4 LENLSKTFPTKGGpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLtalsERELRAARRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQH-NvLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:COG1135 84 IGMIFQHfN-LLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKVL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1062 ILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG1135 163 LCDEATSALDPETTRSILDLLKDINRelGLTIVLITHEMDVVRRICDRVAVLENGRI 219
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
1943-2152 |
3.17e-29 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 117.59 E-value: 3.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKR--KQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILRE-----IDEV 2015
Cdd:cd03255 1 IELKNLSKTYGGggEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLsekelAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQNMGYCPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPP 2095
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2096 VVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEEcEALCTRMAIMVNGR 2152
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEaGTTIVVVTHDPEL-AEYADRIIELRDGK 217
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1944-2157 |
4.78e-29 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 116.86 E-value: 4.78e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1944 ELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVhqnmGYCP 2023
Cdd:cd03235 1 EVEDLT--VSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI----GYVP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2024 QFDSIN--------EL-LTGREHlelYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAP 2094
Cdd:cd03235 75 QRRSIDrdfpisvrDVvLMGLYG---HKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2095 PVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRmAIMVNGRFRCLG 2157
Cdd:cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
1943-2152 |
5.63e-29 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 116.46 E-value: 5.63e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREidEVHQ-NMGY 2021
Cdd:cd03259 1 LELKGLSKTYG--SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV--PPERrNIGM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2022 CPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDE 2101
Cdd:cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2102 PTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03259 157 PLSALDAKLREELREELKELQRElGITTIYVTHDQEEALALADRIAVMNEGR 208
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
916-1121 |
7.83e-29 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 117.57 E-value: 7.83e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS----ELSAIRqslGVCPQHNV 991
Cdd:PRK13548 10 VRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADwspaELARRR---AVLPQHSS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 992 L-FSmLTVEEHIWFyGRLK-GLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGG-MQRklsVALAFV--------GGSKV 1060
Cdd:PRK13548 87 LsFP-FTVEEVVAM-GRAPhGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGeQQR---VQLARVlaqlwepdGPPRW 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1061 VILDEPTAGVDPY--------ARRgiwdllLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK13548 162 LLLDEPTSALDLAhqhhvlrlARQ------LAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1959-2152 |
1.01e-28 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 126.01 E-value: 1.01e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1959 AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGksilREID----EVHQNMGYCPQFDSINELLTG 2034
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFG----QPVDagdiATRRRVGYMSQAFSLYGELTV 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2035 REHLELYAVLRGIPEKEVCD-VAEWgIRKLGLVKYADKAAGSYSGGnMR-KLSTAMALIGAPPVVFLDEPTTGMDPKARR 2112
Cdd:NF033858 357 RQNLELHARLFHLPAAEIAArVAEM-LERFDLADVADALPDSLPLG-IRqRLSLAVAVIHKPELLILDEPTSGVDPVARD 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2048025527 2113 ALWnciHSVI----KEGRSVVLTSHSMEECEaLCTRMAIMVNGR 2152
Cdd:NF033858 435 MFW---RLLIelsrEDGVTIFISTHFMNEAE-RCDRISLMHAGR 474
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
909-1115 |
1.34e-28 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 116.23 E-value: 1.34e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSeLSA---IRQSLGV 985
Cdd:COG0410 6 VENLHAGY--GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITG-LPPhriARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQHNVLFSMLTVEEHIWFyGRLKGLSEQQVKGEIEQI------LQDtglphKRSSRTSALSGGMQRKLSVALAFVGGSK 1059
Cdd:COG0410 83 VPEGRRIFPSLTVEENLLL-GAYARRDRAEVRADLERVyelfprLKE-----RRRQRAGTLSGGEQQMLAIGRALMSRPK 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1060 VVILDEPTAGVDPYARRGIWDLL--LKyRQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:COG0410 157 LLLLDEPSLGLAPLIVEEIFEIIrrLN-REGVTILLVEQNARFALEIADRAYVLERGR 213
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
1943-2152 |
1.97e-28 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 115.89 E-value: 1.97e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQK-------------------PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFL 2003
Cdd:cd03267 1 IEVSNLSKSYRVYSKepgligslkslfkrkyrevEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2004 AGKSILREIDEVHQNMGYCpqFDSINEL---LTGREHLELYAVLRGIPE-------KEVCDVaewgirkLGLVKYADKAA 2073
Cdd:cd03267 81 AGLVPWKRRKKFLRRIGVV--FGQKTQLwwdLPVIDSFYLLAAIYDLPParfkkrlDELSEL-------LDLEELLDTPV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2074 GSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03267 152 RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRErGTTVLLTSHYMKDIEALARRVLVIDKGR 231
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1942-2184 |
1.98e-28 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 122.32 E-value: 1.98e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVF---KRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL----REIDE 2014
Cdd:COG1123 260 LLEVRNLSKRYpvrGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTklsrRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 VHQNMGYCPQ--FDSINELLTGREHLEL-YAVLRGIPEKEVCDVAEWGIRKLGLV-KYADKAAGSYSGGNMRKLSTAMAL 2090
Cdd:COG1123 340 LRRRVQMVFQdpYSSLNPRMTVGDIIAEpLRLHGLLSRAERRERVAELLERVGLPpDLADRYPHELSGGQRQRVAIARAL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2091 IGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDG 2169
Cdd:COG1123 420 ALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQHP 499
|
250
....*....|....*
gi 2048025527 2170 YTIILRVAGPDPDLS 2184
Cdd:COG1123 500 YTRALLAAVPSLDPA 514
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
909-1116 |
1.99e-28 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 114.66 E-value: 1.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLaVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSelSAIRQSLGVCPQ 988
Cdd:cd03226 2 IENISFSYKKGTEI-LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGYVMQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 H-NVLFSMLTVEEHIWFygRLKGLSEqqVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPT 1067
Cdd:cd03226 79 DvDYQLFTDSVREELLL--GLKELDA--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1068 AGVDPYARRGIWDLLLK-YRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03226 155 SGLDYKNMERVGELIRElAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
909-1116 |
2.70e-28 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 112.91 E-value: 2.70e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK--DIRSELSAIRQSLGVC 986
Cdd:cd03216 3 LRGITKRF--GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKevSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQhnvlfsmltveehiwfygrlkglseqqvkgeieqilqdtglphkrssrtsaLSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:cd03216 81 YQ---------------------------------------------------LSVGERQMVEIARALARNARLLILDEP 109
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1067 TAGVDPYARRGIWDLL--LKyRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03216 110 TAALTPAEVERLFKVIrrLR-AQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
916-1116 |
3.72e-28 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 114.14 E-value: 3.72e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAI--RQSLGVCPQHNVLF 993
Cdd:COG4619 8 FRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPL-SAMPPPewRRQVAYVPQEPALW 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 SMlTVEEHI--WFYGRLKGLSEQQVKGEIEQIlqdtGLPHK-RSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGV 1070
Cdd:COG4619 87 GG-TVRDNLpfPFQLRERKFDRERALELLERL----GLPPDiLDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSAL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2048025527 1071 DPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG4619 162 DPENTRRVEELLREYLAeeGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
909-1116 |
3.89e-28 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 115.12 E-value: 3.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYR-------------------HGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILG 969
Cdd:cd03267 3 VSNLSKSYRvyskepgligslkslfkrkYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 970 KDIRSELSAIRQSLG-VCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKL 1048
Cdd:cd03267 83 LVPWKRRKKFLRRIGvVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1049 SVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGR--TIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERgtTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
907-1128 |
3.94e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 115.99 E-value: 3.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQSLGV 985
Cdd:PRK13647 5 IEVEDLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEnEKWVRSKVGL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQ--HNVLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVIL 1063
Cdd:PRK13647 84 VFQdpDDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1064 DEPTAGVDPYARRGIWDLLLK-YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQ 1128
Cdd:PRK13647 163 DEPMAYLDPRGQETLMEILDRlHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1943-2180 |
4.16e-28 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 115.29 E-value: 4.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVF--KRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREID-EVHQNM 2019
Cdd:COG1124 2 LEVRNLSVSYgqGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRkAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQ--FDSINELLTGREHLELYAVLRGIPEKEVcDVAEWgIRKLGL-VKYADKAAGSYSGGNMRKLSTAMALIGAPPV 2096
Cdd:COG1124 82 QMVFQdpYASLHPRHTVDRILAEPLRIHGLPDREE-RIAEL-LEQVGLpPSFLDRYPHQLSGGQRQRVAIARALILEPEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2097 VFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILR 2175
Cdd:COG1124 160 LLLDEPTSALDVSVQAEILNLLKDLREErGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPKHPYTRELL 239
|
....*
gi 2048025527 2176 VAGPD 2180
Cdd:COG1124 240 AASLA 244
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
1942-2164 |
5.89e-28 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 114.68 E-value: 5.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlreideVHQNM-- 2019
Cdd:TIGR04406 1 TLVAENLIKSYKKRK--VVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDI------THLPMhe 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 ------GYCPQFDSINELLTGREHLElyAVL---RGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMAL 2090
Cdd:TIGR04406 73 rarlgiGYLPQEASIFRKLTVEENIM--AVLeirKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARAL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2091 IGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2164
Cdd:TIGR04406 151 ATNPKFILLDEPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVA 224
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
917-1132 |
7.06e-28 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 123.31 E-value: 7.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSelSAIRQSlgVCPQ-------- 988
Cdd:NF033858 10 RYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMAD--ARHRRA--VCPRiaympqgl 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 -HNvLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLpHKRSSRTSA-LSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:NF033858 86 gKN-LYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGL-APFADRPAGkLSGGMKQKLGLCCALIHDPDLLILDEP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1067 TAGVDPYARRGIWDLLLKYRQGR---TIILSTHHMDEADILgDRIAIISHGKLCCVGSSLYLKNQLGTG 1132
Cdd:NF033858 164 TTGVDPLSRRQFWELIDRIRAERpgmSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPAELLARTGAD 231
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
911-1116 |
8.67e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 115.17 E-value: 8.67e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 911 NLVKVYRHGKkLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIR---SELSAIRQSLGVCP 987
Cdd:PRK13639 6 DLKYSYPDGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKydkKSLLEVRKTVGIVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QH--NVLFSMlTVEEHIWFyGRLK-GLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILD 1064
Cdd:PRK13639 85 QNpdDQLFAP-TVEEDVAF-GPLNlGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1065 EPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK13639 163 EPTSGLDPMGASQIMKLLYDLnKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
923-1115 |
1.04e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 115.33 E-value: 1.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI---RSELSAIRQSLGVCPQH--NVLFSMlT 997
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKLRESVGMVFQDpdNQLFSA-S 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 998 VEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRG 1077
Cdd:PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2048025527 1078 IWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:PRK13636 180 IMKLLVEMQKelGLTIIIATHDIDIVPLYCDNVFVMKEGR 219
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1942-2162 |
1.87e-27 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 119.24 E-value: 1.87e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG---DTLVTSGEAFLAGKSILREIDEVH-Q 2017
Cdd:COG1123 4 LLEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllpHGGRISGEVLLDGRDLLELSEALRgR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2018 NMGYCPQ--FDSINeLLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPP 2095
Cdd:COG1123 84 RIGMVFQdpMTQLN-PVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2096 VVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL 2162
Cdd:COG1123 163 LLIADEPTTALDVTTQAEILDLLRELQRErGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEI 230
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
910-1116 |
1.97e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 114.54 E-value: 1.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLVKVYRHG---KKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-----LSAIRQ 981
Cdd:PRK13641 6 ENVDYIYSPGtpmEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPEtgnknLKKLRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGVCPQ--HNVLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTS-ALSGGMQRKLSVALAFVGGS 1058
Cdd:PRK13641 86 KVSLVFQfpEAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPfELSGGQMRRVAIAGVMAYEP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK13641 165 EILCLDEPAAGLDPEGRKEMMQLFKDYqKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
907-1116 |
2.16e-27 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 111.85 E-value: 2.16e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI---RSELSAIRQSL 983
Cdd:cd03262 1 IEIKNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtddKKNINELRQKV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 984 GVCPQHNVLFSMLTVEEHIWFYGR-LKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVI 1062
Cdd:cd03262 79 GMVFQQFNLFPHLTVLENITLAPIkVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVML 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1063 LDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03262 159 FDEPTSALDPELVGEVLDVMKDLaEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
909-1144 |
2.42e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 115.18 E-value: 2.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKK-------------------LAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILG 969
Cdd:COG4586 4 VENLSKTYRVYEKepglkgalkglfrreyrevEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 970 KDIRSELSAIRQSLG-VCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKG---------EIEQILqdtglphKRSSRTsa 1039
Cdd:COG4586 84 YVPFKRRKEFARRIGvVFGQRSQLWWDLPAIDSFRLLKAIYRIPDAEYKKrldelvellDLGELL-------DTPVRQ-- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1040 LSGGmQR-KLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDeaDI--LGDRIAIISHG 1114
Cdd:COG4586 155 LSLG-QRmRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRerGTTILLTSHDMD--DIeaLCDRVIVIDHG 231
|
250 260 270
....*....|....*....|....*....|....*.
gi 2048025527 1115 KLccvgssLY------LKNQLGTGYYLTLVKKEAEP 1144
Cdd:COG4586 232 RI------IYdgsleeLKERFGPYKTIVLELAEPVP 261
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
909-1116 |
5.14e-27 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 114.90 E-value: 5.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKK--LAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQS 982
Cdd:PRK11153 4 LKNISKVFPQGGRtiHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtalsEKELRKARRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVI 1062
Cdd:PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1063 LDEPTAGVDPYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK11153 164 CDEATSALDPATTRSILELLKDInrELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1942-2152 |
5.53e-27 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 111.44 E-value: 5.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKP--AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL----REIDEV 2015
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSvkALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLklsrRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQNMGYCPQ--FDSINELLTGREHLE--LYAVLRGIPEKEVCDVAEWGIRKLGLVK-YADKAAGSYSGGNMRKLSTAMAL 2090
Cdd:cd03257 81 RKEIQMVFQdpMSSLNPRMTIGEQIAepLRIHGKLSKKEARKEAVLLLLVGVGLPEeVLNRYPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2091 IGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGK 223
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1942-2152 |
5.92e-27 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 111.66 E-value: 5.92e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILReiDEVHQ---- 2017
Cdd:COG1137 3 TLEAENLVKSYGKRT--VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITH--LPMHKrarl 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2018 NMGYCPQFDSINELLTGREHleLYAVL--RGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPP 2095
Cdd:COG1137 79 GIGYLPQEASIFRKLTVEDN--ILAVLelRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPK 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2096 VVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG1137 157 FILLDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGK 213
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
920-1116 |
7.07e-27 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 110.82 E-value: 7.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 920 KKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPP---TSGTAYILGKDIRSELSaiRQSLGVCPQHNVLFSML 996
Cdd:cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQPRKPDQF--QKCVAYVRQDDILLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 997 TVEEHIWFYGRLKG---LSEQQVKGEIEQI-LQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDP 1072
Cdd:cd03234 97 TVRETLTYTAILRLprkSSDAIRKKRVEDVlLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2048025527 1073 YARRGIWDLLLKY-RQGRTIILSTHHmDEADI--LGDRIAIISHGKL 1116
Cdd:cd03234 177 FTALNLVSTLSQLaRRNRIVILTIHQ-PRSDLfrLFDRILLLSSGEI 222
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1942-2164 |
8.37e-27 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 111.22 E-value: 8.37e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKqkPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGdtLV--TSGEAFLAGKSIL----REIDEV 2015
Cdd:COG1127 5 MIEVRNLTKSFGDR--VVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIG--LLrpDSGEILVDGQDITglseKELYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQNMGYCPQ----FDSinelLTGREHLELYavLR---GIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGnMRK---Ls 2085
Cdd:COG1127 81 RRRIGMLFQggalFDS----LTVFENVAFP--LRehtDLSEAEIRELVLEKLELVGLPGAADKMPSELSGG-MRKrvaL- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2086 tAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2164
Cdd:COG1127 153 -ARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
1967-2154 |
1.37e-26 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 109.83 E-value: 1.37e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR----EIdeVHQNMGYCPQFDSINELLTGREHLELYA 2042
Cdd:cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGlpphER--ARAGIGYVPEGRRIFPELTVEENLLLGA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2043 VLRGIpekevcDVAEWGIRKL-----GLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNC 2117
Cdd:cd03224 101 YARRR------AKRKARLERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 2048025527 2118 IHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFR 2154
Cdd:cd03224 175 IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
906-1121 |
1.50e-26 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 110.51 E-value: 1.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 906 GVYIENLVKvyRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQSLGV 985
Cdd:cd03296 2 SIEVRNVSK--RFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA-TDVPVQERNVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQHNVLFSMLTVEEHIWFYGRLK----GLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKprseRPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1062 ILDEPTAGVDPYARRGI--WDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:cd03296 159 LLDEPFGALDAKVRKELrrWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
907-1121 |
3.13e-26 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 112.47 E-value: 3.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQSLGVC 986
Cdd:COG3839 4 LELENVSKSY--GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDV-TDLPPKDRNIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGG-MQRklsVAL--AFVGGSKVVIL 1063
Cdd:COG3839 81 FQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGqRQR---VALgrALVREPKVFLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 1064 DEPTAGVDPYARrgiWDL------LLKyRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:COG3839 158 DEPLSNLDAKLR---VEMraeikrLHR-RLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGT 217
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
1943-2162 |
3.28e-26 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 109.70 E-value: 3.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLtgDTLV--TSGEAFLAGKSIlREIDEVH--QN 2018
Cdd:cd03295 1 IEFENVTKRYG-GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI--NRLIepTSGEIFIDGEDI-REQDPVElrRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2019 MGYCPQfdSINEL--LTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGL--VKYADKAAGSYSGGNMRKLSTAMALIGAP 2094
Cdd:cd03295 77 IGYVIQ--QIGLFphMTVEENIALVPKLLKWPKEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADP 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2095 PVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL 2162
Cdd:cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQElGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
921-1116 |
3.38e-26 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 107.52 E-value: 3.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 921 KLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI--RSELSAIRQSLGVCP---QHNVLFSM 995
Cdd:cd03215 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVtrRSPRDAIRAGIAYVPedrKREGLVLD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 996 LTVEEHIwfygrlkglseqqvkgeieqILqdtglphkrssrTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYAR 1075
Cdd:cd03215 93 LSVAENI--------------------AL------------SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2048025527 1076 RGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03215 141 AEIYRLIRELAdAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
921-1121 |
3.67e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 110.88 E-value: 3.67e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 921 KLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-----LSAIRQSLGVC---PQHNvL 992
Cdd:PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGkknkkLKPLRKKVGIVfqfPEHQ-L 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 993 FSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTS-ALSGGMQRKLSVALAFVGGSKVVILDEPTAGVD 1071
Cdd:PRK13634 99 FEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPfELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1072 PYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK13634 178 PKGRKEMMEMFykLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
907-1116 |
4.51e-26 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 109.51 E-value: 4.51e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHG--KKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI-RSELSAIRQSL 983
Cdd:COG1124 2 LEVRNLSVSYGQGgrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVtRRRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 984 GVCPQH--NVLFSMLTVEEHIwfygR--LKGLSEQQVKGEIEQILQDTGLPHK-RSSRTSALSGG-MQRklsVAL--AFV 1055
Cdd:COG1124 82 QMVFQDpyASLHPRHTVDRIL----AepLRIHGLPDREERIAELLEQVGLPPSfLDRYPHQLSGGqRQR---VAIarALI 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG1124 155 LEPELLLLDEPTSALDVSVQAEILNLLKDLREerGLTYLFVSHDLAVVAHLCDRVAVMQNGRI 217
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
913-1100 |
4.85e-26 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 109.40 E-value: 4.85e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 913 VKVYRHGKKLaVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG-TAYILGKDIRSE-LSAIRQSLG-VCPQ- 988
Cdd:COG1119 9 VTVRRGGKTI-LDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGEdVWELRKRIGlVSPAl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIW--FY---GRLKGLSEQQVKgEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVIL 1063
Cdd:COG1119 88 QLRFPRDETVLDVVLsgFFdsiGLYREPTDEQRE-RARELLELLGLAHLADRPFGTLSQGEQRRVLIARALVKDPELLIL 166
|
170 180 190
....*....|....*....|....*....|....*....
gi 2048025527 1064 DEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDE 1100
Cdd:COG1119 167 DEPTAGLDLGARELLLALLdkLAAEGAPTLVLVTHHVEE 205
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
927-1120 |
7.66e-26 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 107.58 E-value: 7.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 927 LTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFyG 1006
Cdd:cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV-TAAPPADRPVSMLFQENNLFAHLTVEQNVGL-G 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1007 RLKGL--SEQQvKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK 1084
Cdd:cd03298 95 LSPGLklTAED-RQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 2048025527 1085 YRQGR--TIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:cd03298 174 LHAETkmTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
910-1121 |
9.46e-26 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 108.06 E-value: 9.46e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLVKVYRhGKKLaVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSEL---SAIRQSLGVC 986
Cdd:PRK10895 7 KNLAKAYK-GRRV-VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI-SLLplhARARRGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIWFYGRL-KGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDE 1065
Cdd:PRK10895 84 PQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1066 PTAGVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK10895 164 PFAGVDPISVIDIKRIIEHLRdSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
1967-2164 |
9.97e-26 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 107.97 E-value: 9.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGdtLV--TSGEAFLAGKSILR----EIDEVHQNMGYCPQ----FDSI----NELL 2032
Cdd:cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVG--LLrpDSGEVLIDGEDISGlseaELYRLRRRMGMLFQsgalFDSLtvfeNVAF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2033 TGREHLELyavlrgiPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGnMRK-LSTAMALIGAPPVVFLDEPTTGMDPKAR 2111
Cdd:cd03261 101 PLREHTRL-------SEEEIREIVLEKLEAVGLRGAEDLYPAELSGG-MKKrVALARALALDPELLLYDEPTAGLDPIAS 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2112 RALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2164
Cdd:cd03261 173 GVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
1944-2157 |
1.94e-25 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 105.21 E-value: 1.94e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1944 ELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR-EIDEVHQNMGYC 2022
Cdd:cd03214 1 EVENLS--VGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASlSPKELARKIAYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFdsinelltgrehlelyavlrgipekevcdvaewgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:cd03214 79 PQA----------------------------------LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLG 2157
Cdd:cd03214 125 TSHLDIAHQIELLELLRRLARErGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
914-1116 |
4.14e-25 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 104.94 E-value: 4.14e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 914 KVYRHGKKLaVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGL--FPPTSGTAYILGKDirSELSAIRQSLGVCPQHNV 991
Cdd:cd03213 16 SPSKSGKQL-LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRrtGLGVSGEVLINGRP--LDKRSFRKIIGYVPQDDI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 992 LFSMLTVEEHIWFYGRLKGlseqqvkgeieqilqdtglphkrssrtsaLSGGMQRKLSVALAFVGGSKVVILDEPTAGVD 1071
Cdd:cd03213 93 LHPTLTVRETLMFAAKLRG-----------------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2048025527 1072 PYARRGIWDLLLKYRQ-GRTIILSTHHMdEADILG--DRIAIISHGKL 1116
Cdd:cd03213 144 SSSALQVMSLLRRLADtGRTIICSIHQP-SSEIFElfDKLLLLSQGRV 190
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
1943-2153 |
7.77e-25 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 104.51 E-value: 7.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR-EIDEVHQNMGY 2021
Cdd:COG4619 1 LELEGLS--FRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQVAY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2022 CPQ-----FDSInelltgREHLELYAVLRGIP--EKEVCDVAEwgirKLGL-VKYADKAAGSYSGGNMRKLSTAMALIGA 2093
Cdd:COG4619 79 VPQepalwGGTV------RDNLPFPFQLRERKfdRERALELLE----RLGLpPDILDKPVERLSGGERQRLALIRALLLQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2094 PPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:COG4619 149 PDVLLLDEPTSALDPENTRRVEELLREYLAEeGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
1938-2177 |
1.19e-24 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 107.90 E-value: 1.19e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1938 GHGDILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAG--KTTTFKMLTGDTLVTSGEAFL---AGKSILREI 2012
Cdd:NF000106 9 GARNAVEVRGLVKHFGEVK--AVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAGRRPWRF*twcANRRALRRT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2013 DEVHQnmgycPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIG 2092
Cdd:NF000106 87 IG*HR-----PVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2093 APPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGdGYTI 2172
Cdd:NF000106 162 RPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVG-GRTL 240
|
....*
gi 2048025527 2173 ILRVA 2177
Cdd:NF000106 241 QIRPA 245
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
1943-2166 |
1.35e-24 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 104.63 E-value: 1.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL------REIDEVH 2016
Cdd:cd03300 1 IELENVSKFYG--GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITnlpphkRPVNTVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2017 QNMGYCPQ---FDSINELLTgrehlelyavLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGA 2093
Cdd:cd03300 79 QNYALFPHltvFENIAFGLR----------LKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNE 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2094 PPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL----KNRF 2166
Cdd:cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKElGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIyeepANRF 226
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
923-1121 |
1.79e-24 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 110.11 E-value: 1.79e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK--DIRSELSAIRQSLGVCPQHNVLFSMLTVEE 1000
Cdd:COG1129 19 ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEpvRFRSPRDAQAAGIAIIHQELNLVPNLSVAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1001 HIWFyGRLKG----LSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARR 1076
Cdd:COG1129 99 NIFL-GREPRrgglIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTASLTEREVE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2048025527 1077 GIWDLL--LKyRQGRTIILSTHHMDEADILGDRIAIISHGKLccVGS 1121
Cdd:COG1129 178 RLFRIIrrLK-AQGVAIIYISHRLDEVFEIADRVTVLRDGRL--VGT 221
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
917-1116 |
2.28e-24 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 103.77 E-value: 2.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKdIRSELSAirqSLGVCPqhnvlfsML 996
Cdd:cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VSSLLGL---GGGFNP-------EL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 997 TVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKL--SVALAFvgGSKVVILDEPTAGVDPYA 1074
Cdd:cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLafAIATAL--EPDILLIDEVLAVGDAAF 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2048025527 1075 RRGIWDLLL-KYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03220 178 QEKCQRRLReLLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
910-1137 |
2.29e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 105.27 E-value: 2.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLVKVYRhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQSLGVCPQ 988
Cdd:PRK13652 7 RDLCYSYS-GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEnIREVRKFVGLVFQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 H--NVLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:PRK13652 86 NpdDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1067 TAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS--SLYLKNQLGTGYYLTL 1137
Cdd:PRK13652 165 TAGLDPQGVKELIDFLndLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTveEIFLQPDLLARVHLDL 239
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
909-1112 |
3.43e-24 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 104.17 E-value: 3.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVY--RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSElSAIRqslGVC 986
Cdd:COG4525 6 VRHVSVRYpgGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGP-GADR---GVV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:COG4525 82 FQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMDEP 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2048025527 1067 TAGVDPYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIIS 1112
Cdd:COG4525 162 FGALDALTREQMQELLLDVwqRTGKGVFLITHSVEEALFLATRLVVMS 209
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1942-2162 |
4.58e-24 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 103.04 E-value: 4.58e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFK--RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL----REIDEV 2015
Cdd:cd03258 1 MIELKNVSKVFGdtGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQNMGYCPQ----FDSinelLTGREHLELYAVLRGIPEKEVCDVAEwgiRKLGLVKYADKaAGSY----SGGNMRKLSTA 2087
Cdd:cd03258 81 RRRIGMIFQhfnlLSS----RTVFENVALPLEIAGVPKAEIEERVL---ELLELVGLEDK-ADAYpaqlSGGQKQRVGIA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2088 MALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL 2162
Cdd:cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
934-1115 |
4.81e-24 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 102.91 E-value: 4.81e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRqslgvcP-----QHNVLFSMLTVEEHIWFyG-- 1006
Cdd:COG3840 25 GERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAER------PvsmlfQENNLFPHLTVAQNIGL-Glr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1007 -RLKgLSEQQvKGEIEQILQDTGLPHKRSSRTSALSGG-MQRklsVALA--FVGGSKVVILDEPTAGVDPYARRGIWDLL 1082
Cdd:COG3840 98 pGLK-LTAEQ-RAQVEQALERVGLAGLLDRLPGQLSGGqRQR---VALArcLVRKRPILLLDEPFSALDPALRQEMLDLV 172
|
170 180 190
....*....|....*....|....*....|....*
gi 2048025527 1083 --LKYRQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:COG3840 173 deLCRERGLTVLMVTHDPEDAARIADRVLLVADGR 207
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
919-1121 |
5.01e-24 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 109.48 E-value: 5.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 919 GKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFSMlT 997
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDlTLESLRRQIGVVPQDTFLFSG-T 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 998 VEEHIwFYGRlKGLSEQqvkgEIEQILQDTG-------LPHK-------RSSRtsaLSGGmQR-KLSVALAFVGGSKVVI 1062
Cdd:COG1132 430 IRENI-RYGR-PDATDE----EVEEAAKAAQahefieaLPDGydtvvgeRGVN---LSGG-QRqRIAIARALLKDPPILI 499
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1063 LDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTH------HMdeadilgDRIAIISHGKLCCVGS 1121
Cdd:COG1132 500 LDEATSALDTETEALIQEALERLMKGRTTIVIAHrlstirNA-------DRILVLDDGRIVEQGT 557
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
906-1121 |
6.50e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 104.06 E-value: 6.50e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 906 GVYIENLVKVYRHGKKL---AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-----ELS 977
Cdd:PRK13649 2 GINLQNVSYTYQAGTPFegrALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITStsknkDIK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIRQSLGVCPQ--HNVLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTS-ALSGGMQRKLSVALAF 1054
Cdd:PRK13649 82 QIRKKVGLVFQfpESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPfELSGGQMRRVAIAGIL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1055 VGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQsGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
909-1114 |
7.16e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 102.30 E-value: 7.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCP 987
Cdd:cd03254 5 FENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVLFSMlTVEEHIwFYGRLkgLSEQQVKGEIEQILQDT--------GLPHKRSSRTSALSGGMQRKLSVALAFVGGSK 1059
Cdd:cd03254 84 QDTFLFSG-TIMENI-RLGRP--NATDEEVIEAAKEAGAHdfimklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1060 VVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMD---EAD--ILGDRIAIISHG 1114
Cdd:cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLStikNADkiLVLDDGKIIEEG 219
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
921-1116 |
8.24e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 103.63 E-value: 8.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 921 KLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE--LSAIRQSLGVCPQH--NVLFSML 996
Cdd:PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEenLWDIRNKAGMVFQNpdNQIVATI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 997 tVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARR 1076
Cdd:PRK13633 103 -VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2048025527 1077 ----GIWDLLLKYrqGRTIILSTHHMDEAdILGDRIAIISHGKL 1116
Cdd:PRK13633 182 evvnTIKELNKKY--GITIILITHYMEEA-VEADRIIVMDSGKV 222
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1967-2152 |
1.12e-23 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 101.98 E-value: 1.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR----EIdeVHQNMGYCPQFDSINELLTGREHLELYA 2042
Cdd:COG0410 26 VEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGlpphRI--ARLGIGYVPEGRRIFPSLTVEENLLLGA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2043 VLRGIPEKEVCDVAEwgI-----RklgLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNC 2117
Cdd:COG0410 104 YARRDRAEVRADLER--VyelfpR---LKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEI 178
|
170 180 190
....*....|....*....|....*....|....*
gi 2048025527 2118 IHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG0410 179 IRRLNREGVTILLVEQNARFALEIADRAYVLERGR 213
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
924-1123 |
2.37e-23 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 101.00 E-value: 2.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 924 VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQslgVCPQHNVLFSMLTVEEHIw 1003
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI-TEPGPDRM---VVFQNYSLLPWLTVRENI- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1004 fYGRLKGLSEQQVKGEIEQILQDT----GLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIW 1079
Cdd:TIGR01184 76 -ALAVDRVLPDLSKSERRAIVEEHialvGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2048025527 1080 DLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSL 1123
Cdd:TIGR01184 155 EELMQIWEehRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQIL 200
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1943-2152 |
2.94e-23 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 99.55 E-value: 2.94e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVGI----PPGECFGLLGVNGAGKTTTFKMLTG--DTLVTSGEAFLAGKSilREIDEVH 2016
Cdd:cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVsgkaKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRP--LDKRSFR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2017 QNMGYCPQFDSINELLTGREHLELYAVLRGIpekevcdvaewgirklglvkyadkaagsySGGNMRKLSTAMALIGAPPV 2096
Cdd:cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAAKLRGL-----------------------------SGGERKRVSIALELVSNPSL 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2097 VFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHS-MEECEALCTRMAIMVNGR 2152
Cdd:cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQpSSEIFELFDKLLLLSQGR 189
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
1943-2157 |
3.32e-23 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 100.02 E-value: 3.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL------REIDEVH 2016
Cdd:cd03301 1 VELENVTKRFG--NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTdlppkdRDIAMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2017 QNMGYCPQfdsinelLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPV 2096
Cdd:cd03301 79 QNYALYPH-------MTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2097 VFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLG 2157
Cdd:cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRlGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
915-1129 |
5.15e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 101.39 E-value: 5.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 915 VYRHG---KKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-----ELSAIRQSLGVC 986
Cdd:PRK13646 11 TYQKGtpyEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHktkdkYIRPVRKRIGMV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQ--HNVLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTS-ALSGGMQRKLSVALAFVGGSKVVIL 1063
Cdd:PRK13646 91 FQfpESQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPfQMSGGQMRKIAIVSILAMNPDIIVL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1064 DEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQL 1129
Cdd:PRK13646 170 DEPTAGLDPQSKRQVMRLLksLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
909-1117 |
5.66e-23 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 99.49 E-value: 5.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCP 987
Cdd:cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRSRISIIP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVLFSMlTV-----------EEHIWfygrlKGLSEQQVKGEIEQilQDTGLPHKRSSRTSALSGGmQRKL-SVALAFV 1055
Cdd:cd03244 85 QDPVLFSG-TIrsnldpfgeysDEELW-----QALERVGLKEFVES--LPGGLDTVVEEGGENLSVG-QRQLlCLARALL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEadILG-DRIAIISHGKLC 1117
Cdd:cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDT--IIDsDRILVLDKGRVV 216
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
918-1116 |
5.81e-23 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 99.95 E-value: 5.81e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 918 HGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSA--IRQSLGVCPQHNVLFSM 995
Cdd:PRK11614 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAkiMREAVAIVPEGRRVFSR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 996 LTVEEHIWFYGRLKglSEQQVKGEIEQILQ-DTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYA 1074
Cdd:PRK11614 95 MTVEENLAMGGFFA--ERDQFQERIKWVYElFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2048025527 1075 RRGIWDLLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK11614 173 IQQIFDTIEQLREqGMTIFLVEQNANQALKLADRGYVLENGHV 215
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
905-1102 |
6.83e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 105.45 E-value: 6.83e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 905 PGVYIENLVKVYRhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSL 983
Cdd:TIGR02857 320 SSLEFSGVSVAYP-GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADaDADSWRDQI 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 984 GVCPQHNVLFSMlTVEEHIWFYgrLKGLSEQQVKGEIEQ-----ILQD--TGLPHKRSSRTSALSGGMQRKLSVALAFVG 1056
Cdd:TIGR02857 399 AWVPQHPFLFAG-TIAENIRLA--RPDASDAEIREALERagldeFVAAlpQGLDTPIGEGGAGLSGGQAQRLALARAFLR 475
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2048025527 1057 GSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTH---HMDEAD 1102
Cdd:TIGR02857 476 DAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHrlaLAALAD 524
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
910-1116 |
7.22e-23 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 99.20 E-value: 7.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQ 988
Cdd:cd03245 6 RNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMlTVEEHIWFyGRLKGLSEqqvkgEIEQILQDTGLP-----HKR------SSRTSALSGGMQRKLSVALAFVGG 1057
Cdd:cd03245 86 DVTLFYG-TLRDNITL-GAPLADDE-----RILRAAELAGVTdfvnkHPNgldlqiGERGRGLSGGQRQAVALARALLND 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1058 SKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADiLGDRIAIISHGKL 1116
Cdd:cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1939-2164 |
7.84e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 99.81 E-value: 7.84e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1939 HGDILELRQLTKVF---KrkqkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILReIDEv 2015
Cdd:COG4674 7 HGPILYVEDLTVSFdgfK-----ALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTG-LDE- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQ--NMGYCPQFD--SINELLTGREHLEL--------YAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRK 2083
Cdd:COG4674 80 HEiaRLGIGRKFQkpTVFEELTVFENLELalkgdrgvFASLFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQW 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2084 LSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSvIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLK 2163
Cdd:COG4674 160 LEIGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKS-LAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEVQ 238
|
.
gi 2048025527 2164 N 2164
Cdd:COG4674 239 A 239
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
1943-2152 |
1.05e-22 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 98.82 E-value: 1.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlREID--EVHQNMG 2020
Cdd:cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI-RQLDpaDLRRNIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQfDSinELLTG--REHLELYAVLrgIPEKEVCDVAEWGirklGLVKYADKAAGSY-----------SGGNMRKLSTA 2087
Cdd:cd03245 82 YVPQ-DV--TLFYGtlRDNITLGAPL--ADDERILRAAELA----GVTDFVNKHPNGLdlqigergrglSGGQRQAVALA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2088 MALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIkEGRSVVLTSH--SMEEceaLCTRMAIMVNGR 2152
Cdd:cd03245 153 RALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHrpSLLD---LVDRIIVMDSGR 215
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
904-1122 |
1.16e-22 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 99.46 E-value: 1.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLvKVYrHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTT---TMSILTGLFPPTSGTAYIL--GKDI---RSE 975
Cdd:PRK14239 3 EPILQVSDL-SVY-YNKKKALNSVSLDFYPNEITALIGPSGSGKSTllrSINRMNDLNPEVTITGSIVynGHNIyspRTD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 976 LSAIRQSLGVCPQHNVLFSMlTVEEHIWFYGRLKGLSEQQV---------KG-----EIEQILQDTGLphkrssrtsALS 1041
Cdd:PRK14239 81 TVDLRKEIGMVFQQPNPFPM-SIYENVVYGLRLKGIKDKQVldeavekslKGasiwdEVKDRLHDSAL---------GLS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1042 GGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK14239 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230
|
.
gi 2048025527 1122 S 1122
Cdd:PRK14239 231 T 231
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
1943-2167 |
1.39e-22 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 104.85 E-value: 1.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlREIDE--VHQNMG 2020
Cdd:COG4987 334 LELEDVSFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDL-RDLDEddLRRRIA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQ----FD-SINE-LLTGREHL---ELYAVLR--GIpekevcdvAEWgIRKL--GLvkyaDKAAGSY----SGGNMRK 2083
Cdd:COG4987 413 VVPQrphlFDtTLREnLRLARPDAtdeELWAALErvGL--------GDW-LAALpdGL----DTWLGEGgrrlSGGERRR 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2084 LSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKeGRSVVLTSHSMEECEAlCTRMAIMVNGRFRCLGSVQHLK 2163
Cdd:COG4987 480 LALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA-GRTVLLITHRLAGLER-MDRILVLEDGRIVEQGTHEELL 557
|
....
gi 2048025527 2164 NRFG 2167
Cdd:COG4987 558 AQNG 561
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
1943-2148 |
1.42e-22 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 98.31 E-value: 1.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVF--KRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKsilrEIDEVHQNMG 2020
Cdd:cd03293 1 LEVRNVSKTYggGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE----PVTGPGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGnMRK-LSTAMALIGAPPVVFL 2099
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGG-MRQrVALARALAVDPDVLLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2100 DEPTTGMDPKARRALWNCIHSVI-KEGRSVVLTSHSMEECEALCTRMAIM 2148
Cdd:cd03293 156 DEPFSALDALTREQLQEELLDIWrETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1942-2152 |
2.16e-22 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 98.62 E-value: 2.16e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSG-EAFLAGKSILRE-IDEVHQNM 2019
Cdd:COG1119 3 LLELRNVT--VRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGEdVWELRKRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GY--------CPQFDSINE-LLTGrehleLYAVL---RGIPEKEVCDVAEWgIRKLGLVKYADKAAGSYSGGNMRKLSTA 2087
Cdd:COG1119 81 GLvspalqlrFPRDETVLDvVLSG-----FFDSIglyREPTDEQRERAREL-LELLGLAHLADRPFGTLSQGEQRRVLIA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2088 MALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEG-RSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG1119 155 RALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVTHHVEEIPPGITHVLLLKDGR 220
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
1954-2151 |
2.30e-22 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 97.33 E-value: 2.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1954 RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI-----LREIDEVHQNMGYCPQFDSI 2028
Cdd:cd03226 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIkakerRKSIGYVMQDVDYQLFTDSV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2029 NElltgrehlELYAVLRGIPEKEvcDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDP 2108
Cdd:cd03226 90 RE--------ELLLGLKELDAGN--EQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2048025527 2109 KARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNG 2151
Cdd:cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
909-1121 |
2.37e-22 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 98.55 E-value: 2.37e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSA--IRQSLGVC 986
Cdd:PRK11231 5 TENLTVGY--GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI-SMLSSrqLARRLALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMLTVEE--------HIWFYGRLKGLSEQQVkgeiEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGS 1058
Cdd:PRK11231 82 PQHHLTPEGITVRElvaygrspWLSLWGRLSAEDNARV----NQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLLLKYRQ-GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTqGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
902-1139 |
3.34e-22 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 101.65 E-value: 3.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 902 HLEPGVYIENLVKvyRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIR----SELS 977
Cdd:PRK10070 24 YIEQGLSKEQILE--KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAkisdAELR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIR-QSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVG 1056
Cdd:PRK10070 102 EVRrKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAI 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1057 GSKVVILDEPTAGVDPYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYY 1134
Cdd:PRK10070 182 NPDILLMDEAFSALDPLIRTEMQDELVKLqaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261
|
....*
gi 2048025527 1135 LTLVK 1139
Cdd:PRK10070 262 RTFFR 266
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
1943-2133 |
4.14e-22 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 96.27 E-value: 4.14e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:TIGR01189 1 LAARNLA--CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGiPEKEVCDVAewgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:TIGR01189 79 GHLPGLKPELSALENLHFWAAIHG-GAQRTIEDA---LAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEP 154
|
170 180 190
....*....|....*....|....*....|.
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSH 2133
Cdd:TIGR01189 155 TTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
925-1140 |
7.78e-22 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 96.84 E-value: 7.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 925 DGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFSMlTVEEHIw 1003
Cdd:cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLRSQIGLVSQEPVLFDG-TIAENI- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1004 FYGRLKGLSEQQV----KGEIEQILqdTGLPHKRSS----RTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYAR 1075
Cdd:cd03249 98 RYGKPDATDEEVEeaakKANIHDFI--MSLPDGYDTlvgeRGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1076 RGIWDLLLKYRQGRTIILSTHHMdeADILG-DRIAIISHGKLCCVGSSLYLKNQlgTGYYLTLVKK 1140
Cdd:cd03249 176 KLVQEALDRAMKGRTTIVIAHRL--STIRNaDLIAVLQNGQVVEQGTHDELMAQ--KGVYAKLVKA 237
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
917-1101 |
9.38e-22 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 94.99 E-value: 9.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDirselsairqSLGVCPQHNVLFSML 996
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGA----------RVAYVPQRSEVPDSL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 997 --TVEE--------HIWFYGRLKGLSEQqvkgEIEQILQDTGLPHKRSSRTSALSGG-MQRKLsVALAFVGGSKVVILDE 1065
Cdd:NF040873 71 plTVRDlvamgrwaRRGLWRRLTRDDRA----AVDDALERVGLADLAGRQLGELSGGqRQRAL-LAQGLAQEADLLLLDE 145
|
170 180 190
....*....|....*....|....*....|....*..
gi 2048025527 1066 PTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEA 1101
Cdd:NF040873 146 PTTGLDAESRERIIALLAEEhARGATVVVVTHDLELV 182
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1941-2159 |
1.06e-21 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 96.69 E-value: 1.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1941 DILELRQLTKVFKRKQKP--------------------AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGE 2000
Cdd:COG1134 3 SMIEVENVSKSYRLYHEPsrslkelllrrrrtrreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2001 AFLAGK--SILreidEVhqNMGYCPQfdsinelLTGREHLELYAVLRGIPEKE-------VCDVAEwgirkLGlvKYADK 2071
Cdd:COG1134 83 VEVNGRvsALL----EL--GAGFHPE-------LTGRENIYLNGRLLGLSRKEidekfdeIVEFAE-----LG--DFIDQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2072 AAGSYSGGnMR-KL--STAMALigAPPVVFLDEPTTGMDP----KARRAlwncIHSVIKEGRSVVLTSHSMEECEALCTR 2144
Cdd:COG1134 143 PVKTYSSG-MRaRLafAVATAV--DPDILLVDEVLAVGDAafqkKCLAR----IRELRESGRTVIFVSHSMGAVRRLCDR 215
|
250
....*....|....*
gi 2048025527 2145 MAIMVNGRFRCLGSV 2159
Cdd:COG1134 216 AIWLEKGRLVMDGDP 230
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
909-1116 |
1.94e-21 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 93.53 E-value: 1.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQ 988
Cdd:cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSmltveehiwfygrlkglseqqvkgeiEQILQDTGLPhkrssrtsaLSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:cd03247 83 RPYLFD--------------------------TTLRNNLGRR---------FSGGERQRLALARILLQDAPIVLLDEPTV 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1069 GVDPYARRGIWDLLLKYRQGRTIILSTHHMdeadiLG----DRIAIISHGKL 1116
Cdd:cd03247 128 GLDPITERQLLSLIFEVLKDKTLIWITHHL-----TGiehmDKILFLENGKI 174
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1942-2148 |
1.96e-21 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 96.31 E-value: 1.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQK--PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKsilrEIDEVHQNM 2019
Cdd:COG1116 7 ALELRGVSKRFPTGGGgvTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGK----PVTGPGPDR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQFDSineLL---TGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKaagsY----SGGnMRK-LSTAMALI 2091
Cdd:COG1116 83 GVVFQEPA---LLpwlTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDA----YphqlSGG-MRQrVAIARALA 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2092 GAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIM 2148
Cdd:COG1116 155 NDPEVLLMDEPFGALDALTRERLQDELLRLWQEtGKTVLFVTHDVDEAVFLADRVVVL 212
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
903-1121 |
2.67e-21 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 98.37 E-value: 2.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 903 LEPGVYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQS 982
Cdd:PRK11607 16 LTPLLEIRNLTKSF--DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-SHVPPYQRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILqdtGLPH-----KRssRTSALSGGMQRKLSVALAFVGG 1057
Cdd:PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEML---GLVHmqefaKR--KPHQLSGGQRQRVALARSLAKR 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1058 SKVVILDEPTAGVDPYARR----GIWDLLlkYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK11607 168 PKLLLLDEPMGALDKKLRDrmqlEVVDIL--ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
922-1116 |
3.27e-21 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 99.71 E-value: 3.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 922 LAVDGLTLG-------F--YEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK--DIRSELSAIRQSLGVCP--- 987
Cdd:COG1129 257 LEVEGLSVGgvvrdvsFsvRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKpvRIRSPRDAIRAGIAYVPedr 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVLFSMLTVEEHIWF-----YGRLKGLSEQQVKGEIEQILQDTGL-PHKRSSRTSALSGGMQRKlsVALA--FVGGSK 1059
Cdd:COG1129 337 KGEGLVLDLSIRENITLasldrLSRGGLLDRRRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQK--VVLAkwLATDPK 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1060 VVILDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEadILG--DRIAIISHGKL 1116
Cdd:COG1129 415 VLILDEPTRGIDVGAKAEIYRLIRELaAEGKAVIVISSELPE--LLGlsDRILVMREGRI 472
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
909-1115 |
3.27e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 95.54 E-value: 3.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHG---KKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI-------RSEL-S 977
Cdd:COG1101 4 LKNLSKTFNPGtvnEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVtklpeykRAKYiG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIRQ--SLGVCPqhnvlfSMlTVEEHI---WFYGRLKGLSEQQVKGEIEQILQ-----DTGLPHKRSSRTSALSGGmQRK 1047
Cdd:COG1101 84 RVFQdpMMGTAP------SM-TIEENLalaYRRGKRRGLRRGLTKKRRELFREllatlGLGLENRLDTKVGLLSGG-QRQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1048 -LSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:COG1101 156 aLSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIveENNLTTLMVTHNMEQALDYGNRLIMMHEGR 226
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
916-1121 |
4.68e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 95.46 E-value: 4.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI---RSELSAIRQSLGVC---PQH 989
Cdd:PRK13638 9 FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLdysKRGLLALRQQVATVfqdPEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 990 NVLFSmlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAG 1069
Cdd:PRK13638 89 QIFYT--DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1070 VDPYARRGIWDLLLK-YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK13638 167 LDPAGRTQMIAIIRRiVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
1943-2152 |
5.90e-21 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 93.78 E-value: 5.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG-----DTLVTSGEAFLAGKSIL---REIDE 2014
Cdd:cd03260 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLDGKDIYdldVDVLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 VHQNMGYCPQ----FDsinelLTGREHLELYAVLRGI-PEKEVCDVAEWGIRKLGLVKY-ADKA-AGSYSGGNMRKLSTA 2087
Cdd:cd03260 79 LRRRVGMVFQkpnpFP-----GSIYDNVAYGLRLHGIkLKEELDERVEEALRKAALWDEvKDRLhALGLSGGQQQRLCLA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2088 MALIGAPPVVFLDEPTTGMDPKARRALWNCIHSvIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAE-LKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1942-2152 |
6.65e-21 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 93.57 E-value: 6.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQK--PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG-DTlVTSGEAFLAGKSIL----REIDE 2014
Cdd:COG1136 4 LLELRNLTKSYGTGEGevTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGlDR-PTSGEVLIDGQDISslseRELAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 V-HQNMGYCPQFdsINEL--LTGREHLELYAVLRGIPEKEV-CDVAEWgIRKLGLVKYADKAAGSYSGGNMRKLSTAMAL 2090
Cdd:COG1136 83 LrRRHIGFVFQF--FNLLpeLTALENVALPLLLAGVSRKERrERAREL-LERVGLGDRLDHRPSQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2091 IGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSmEECEALCTRMAIMVNGR 2152
Cdd:COG1136 160 VNRPKLILADEPTGNLDSKTGEEVLELLRELNRElGTTIVMVTHD-PELAARADRVIRLRDGR 221
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
1943-2152 |
7.01e-21 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 92.25 E-value: 7.01e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEV---HQNM 2019
Cdd:cd03229 1 LELKNVSKRYG--QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELpplRRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQFDSINELLTGREHLELyavlrgipekevcdvaewgirklGLvkyadkaagsySGGNMRKLSTAMALIGAPPVVFL 2099
Cdd:cd03229 79 GMVFQDFALFPHLTVLENIAL-----------------------GL-----------SGGQQQRVALARALAMDPDVLLL 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2100 DEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03229 125 DEPTSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
909-1110 |
9.24e-21 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 95.51 E-value: 9.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKL--AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPP---TSGTAYILGKDI----RSELSAI 979
Cdd:COG0444 4 VRNLKVYFPTRRGVvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLlklsEKELRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 980 R-QSLGVCPQH--NVLFSMLTVEEHIW-FYGRLKGLSEQQVKGEIEQILQDTGL----------PHkrssrtsALSGGMQ 1045
Cdd:COG0444 84 RgREIQMIFQDpmTSLNPVMTVGDQIAePLRIHGGLSKAEARERAIELLERVGLpdperrldryPH-------ELSGGMR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1046 RKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAI 1110
Cdd:COG0444 157 QRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRelGLAILFITHDLGVVAEIADRVAV 223
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
918-1116 |
9.98e-21 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 93.45 E-value: 9.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 918 HGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFSMl 996
Cdd:cd03253 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRAIGVVPQDTVLFND- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 997 TVEEHIwFYGRLKGLSEQQVKGEIEQILQDT--GLPHKRSS----RTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGV 1070
Cdd:cd03253 90 TIGYNI-RYGRPDATDEEVIEAAKAAQIHDKimRFPDGYDTivgeRGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2048025527 1071 DPYARRGIWDLLLKYRQGRTIILSTHHMDEAdILGDRIAIISHGKL 1116
Cdd:cd03253 169 DTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VNADKIIVLKDGRI 213
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
898-1121 |
1.15e-20 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 96.55 E-value: 1.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 898 EEPAHLEPGVYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELS 977
Cdd:PRK09452 6 KQPSSLSPLVELRGISKSF--DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI-THVP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIRQSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGG 1057
Cdd:PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1058 SKVVILDEPTAGVDpYARRGIWDLLLKYRQ---GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK09452 163 PKVLLLDESLSALD-YKLRKQMQNELKALQrklGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
1967-2133 |
1.73e-20 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 92.33 E-value: 1.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTG---DTLVTSGEAFLAGKSilREIDEVHQNMGYCPQFDSINELLTGREHLELYAV 2043
Cdd:cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGrveGGGTTSGQILFNGQP--RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAI 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2044 LR-------GIPEKEVCDVaewGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDpkARRALwN 2116
Cdd:cd03234 108 LRlprkssdAIRKKRVEDV---LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD--SFTAL-N 181
|
170 180
....*....|....*....|
gi 2048025527 2117 CIHSVI---KEGRSVVLTSH 2133
Cdd:cd03234 182 LVSTLSqlaRRNRIVILTIH 201
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
917-1115 |
1.85e-20 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 93.13 E-value: 1.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCP--QHNVLFS 994
Cdd:PRK11300 14 RFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRtfQHVRLFR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 995 MLTVEEHIWF-------YGRLKGL--------SEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSK 1059
Cdd:PRK11300 94 EMTVIENLLVaqhqqlkTGLFSGLlktpafrrAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPE 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1060 VVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:PRK11300 174 ILMLDEPAAGLNPKETKELDELIAELRNehNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1943-2152 |
2.08e-20 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 90.18 E-value: 2.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlreidevhqnmgyc 2022
Cdd:cd03216 1 LELRGITKRFG--GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV-------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 pQFDSINElltgrehlelyAVLRGIpekevcdvaewgirklGLVkyadkaagsY--SGGNMRKLSTAMALIGAPPVVFLD 2100
Cdd:cd03216 65 -SFASPRD-----------ARRAGI----------------AMV---------YqlSVGERQMVEIARALARNARLLILD 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2101 EPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03216 108 EPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1942-2166 |
2.65e-20 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 95.16 E-value: 2.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREidEVHQ-NMG 2020
Cdd:COG3842 5 ALELENVSKRYG--DVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGL--PPEKrNVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQ----FDSinelLTGREHLELYAVLRGIPEKEVCD-VAEWgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPP 2095
Cdd:COG3842 81 MVFQdyalFPH----LTVAENVAFGLRMRGVPKAEIRArVAEL-LELVGLEGLADRYPHQLSGGQQQRVALARALAPEPR 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2096 VVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL----KNRF 2166
Cdd:COG3842 156 VLLLDEPLSALDAKLREEMREELRRLQRElGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEIyerpATRF 231
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
906-1130 |
3.45e-20 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 94.80 E-value: 3.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 906 GVYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAgktttmSILTGLFPptsgtAYILGKDIR----------SE 975
Cdd:NF000106 13 AVEVRGLVKHF--GEVKAVDGVDLDVREGTVLGVLGP*GA------A**RGALP-----AHV*GPDAGrrpwrf*twcAN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 976 LSAIRQSLGVC-PQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAF 1054
Cdd:NF000106 80 RRALRRTIG*HrPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASM 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1055 VGGSKVVILDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLG 1130
Cdd:NF000106 160 IGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMvRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVG 236
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
916-1121 |
3.56e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 93.15 E-value: 3.56e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKL-----AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA----YILGKDIRS--ELSAIRQSLG 984
Cdd:PRK13645 14 YTYAKKTpfefkALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTivgdYAIPANLKKikEVKRLRKEIG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 985 VC---PQHNvLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTS-ALSGGMQRKLSVALAFVGGSKV 1060
Cdd:PRK13645 94 LVfqfPEYQ-LFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPfELSGGQKRRVALAGIIAMDGNT 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1061 VILDEPTAGVDPYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK13645 172 LVLDEPTGGLDPKGEEDFINLFERLnkEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
907-1121 |
5.01e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 92.56 E-value: 5.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS---GTAYILGKDIRSE-LSAIRQS 982
Cdd:PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTAKtVWDIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQH-NVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:PRK13640 86 VGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1062 ILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADiLGDRIAIISHGKLCCVGS 1121
Cdd:PRK13640 166 ILDESTSMLDPAGKEQILKLIrkLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGS 226
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
1943-2152 |
5.79e-20 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 91.94 E-value: 5.79e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVG----------------------IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGE 2000
Cdd:cd03294 1 IKIKGLYKIFGKNPQKAFKLLAKGkskeeilkktgqtvgvndvsldVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2001 AFLAGKSI-------LRE-----IDEVHQNMGYCPQfdsinelLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKY 2068
Cdd:cd03294 81 VLIDGQDIaamsrkeLRElrrkkISMVFQSFALLPH-------RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2069 ADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAI 2147
Cdd:cd03294 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAElQKTIVFITHDLDEALRLGDRIAI 233
|
....*
gi 2048025527 2148 MVNGR 2152
Cdd:cd03294 234 MKDGR 238
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
933-1121 |
6.94e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 92.49 E-value: 6.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 933 EGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA-----YILGKDIRSELSAIRQSLGVCPQ--HNVLFSMlTVEEHIWFY 1005
Cdd:PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVtvgdiVVSSTSKQKEIKPVRKKVGVVFQfpESQLFEE-TVLKDVAFG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1006 GRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTS-ALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK 1084
Cdd:PRK13643 110 PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPfELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES 189
|
170 180 190
....*....|....*....|....*....|....*...
gi 2048025527 1085 YRQ-GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK13643 190 IHQsGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1942-2152 |
7.00e-20 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 93.19 E-value: 7.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKP--AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG---DTLVTSGEAFLAGKSIL----REI 2012
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVvkAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGEDLLklseKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2013 DEV-HQNMGYCPQ--FDSINELLTGREHL-ELYAVLRGIPEKEVCDVAewgIRKLGLVK--YADKAAGSY----SGGnMR 2082
Cdd:COG0444 81 RKIrGREIQMIFQdpMTSLNPVMTVGDQIaEPLRIHGGLSKAEARERA---IELLERVGlpDPERRLDRYphelSGG-MR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2083 -KLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG0444 157 qRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFITHDLGVVAEIADRVAVMYAGR 228
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
924-1116 |
7.80e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 92.10 E-value: 7.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 924 VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQSLGVCPQH-NVLFSMLTVEEH 1001
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEnVWDIRHKIGMVFQNpDNQFVGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1002 IWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL 1081
Cdd:PRK13650 103 VAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182
|
170 180 190
....*....|....*....|....*....|....*..
gi 2048025527 1082 LLKYRQ--GRTIILSTHHMDEAdILGDRIAIISHGKL 1116
Cdd:PRK13650 183 IKGIRDdyQMTVISITHDLDEV-ALSDRVLVMKNGQV 218
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1936-2157 |
7.85e-20 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 90.67 E-value: 7.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1936 GLGHGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGK-SILREIde 2014
Cdd:cd03220 14 KGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRvSSLLGL-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 vhqNMGycpqfdsINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAP 2094
Cdd:cd03220 92 ---GGG-------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2095 PVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLG 2157
Cdd:cd03220 162 DILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
909-1116 |
1.12e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 92.07 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRhgKKL-----AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-------- 975
Cdd:PRK13651 5 VKNIVKIFN--KKLptelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKkktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 976 -----------------LSAIRQSLGVCPQ--HNVLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSR 1036
Cdd:PRK13651 83 vleklviqktrfkkikkIKEIRRRVGVVFQfaEYQLFEQ-TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1037 TS-ALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK-YRQGRTIILSTHHMDEADILGDRIAIISHG 1114
Cdd:PRK13651 162 SPfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNlNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241
|
..
gi 2048025527 1115 KL 1116
Cdd:PRK13651 242 KI 243
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1941-2153 |
1.14e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 95.25 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1941 DILELRQLTKVF---KRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGE---------------AF 2002
Cdd:TIGR03269 278 PIIKVRNVSKRYisvDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEvnvrvgdewvdmtkpGP 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2003 LAGKSILREIDEVHQNMGYCPQfDSINELLTGREHLEL---YAVLRGIPEKEVCDVAEWGIRKLgLVKYADKaagsYSGG 2079
Cdd:TIGR03269 358 DGRGRAKRYIGILHQEYDLYPH-RTVLDNLTEAIGLELpdeLARMKAVITLKMVGFDEEKAEEI-LDKYPDE----LSEG 431
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2080 NMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
916-1097 |
1.14e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 95.51 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRH-GKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLF 993
Cdd:TIGR02868 342 AGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSlDQDEVRRRVSVCAQDAHLF 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 SMlTVEEHIWFyGRlKGLSEQQVKGEIEQI-LQD--TGLPHKRSSRT----SALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:TIGR02868 422 DT-TVRENLRL-AR-PDATDEELWAALERVgLADwlRALPDGLDTVLgeggARLSGGERQRLALARALLADAPILLLDEP 498
|
170 180 190
....*....|....*....|....*....|.
gi 2048025527 1067 TAGVDPYARRGIWDLLLKYRQGRTIILSTHH 1097
Cdd:TIGR02868 499 TEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
925-1116 |
1.38e-19 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 95.95 E-value: 1.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 925 DGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIR-QSLGVCPQHNVLFSMLTVE 999
Cdd:PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVatldADALAQLRrEHFGFIFQRYHLLSHLTAA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1000 EHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIW 1079
Cdd:PRK10535 105 QNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM 184
|
170 180 190
....*....|....*....|....*....|....*...
gi 2048025527 1080 DLLLKYR-QGRTIILSTHHMDEADiLGDRIAIISHGKL 1116
Cdd:PRK10535 185 AILHQLRdRGHTVIIVTHDPQVAA-QAERVIEIRDGEI 221
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
917-1121 |
1.58e-19 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 90.14 E-value: 1.58e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKdIRS--ELSAirqslGVCPQhnvlfs 994
Cdd:COG1134 35 RREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGR-VSAllELGA-----GFHPE------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 995 mLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGL------PHKR-SSrtsalsgGMQRKLSVALAFVGGSKVVILDEPT 1067
Cdd:COG1134 103 -LTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELgdfidqPVKTySS-------GMRARLAFAVATAVDPDILLVDEVL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1068 AGVDPY----ARRGIWDLLlkyRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:COG1134 175 AVGDAAfqkkCLARIRELR---ESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGD 229
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
923-1116 |
1.75e-19 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 89.74 E-value: 1.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPP----TSGTAYILGKDIRSelSAIRQSLGVCPQHN---VLFSM 995
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPLLP--LSIRGRHIATIMQNprtAFNPL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 996 LTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKR---SSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDP 1072
Cdd:TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEevlKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2048025527 1073 YARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:TIGR02770 159 VNQARVLKLLRELRQlfGTGILLITHDLGVVARIADEVAVMDDGRI 204
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
917-1096 |
5.62e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 87.62 E-value: 5.62e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTayILGKDIRSELSAIRQS---LGvcpQHNVLF 993
Cdd:PRK13539 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT--IKLDGGDIDDPDVAEAchyLG---HRNAMK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 SMLTVEEHIWFYGRLKGLSEqqvkGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPY 1073
Cdd:PRK13539 86 PALTVAENLEFWAAFLGGEE----LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
|
170 180
....*....|....*....|....
gi 2048025527 1074 ARRGIWDLLLKYR-QGRTIILSTH 1096
Cdd:PRK13539 162 AVALFAELIRAHLaQGGIVIAATH 185
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
910-1116 |
6.09e-19 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 88.01 E-value: 6.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLVKVYRHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQSLGV 985
Cdd:PRK10908 5 EHVSKAYLGGRQ-ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDItrlkNREVPFLRRQIGM 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDE 1065
Cdd:PRK10908 84 IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1066 PTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK10908 164 PTGNLDDALSEGILRLFEEFnRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
925-1097 |
6.10e-19 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 87.17 E-value: 6.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 925 DGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWF 1004
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1005 YGRLKGLSEQQvkgEIEQILQDTGLPHKRSSRTSALSGGMQRKlsVALA--FVGGSKVVILDEP-----TAGVDPYARRg 1077
Cdd:PRK13538 98 YQRLHGPGDDE---ALWEALAQVGLAGFEDVPVRQLSAGQQRR--VALArlWLTRAPLWILDEPftaidKQGVARLEAL- 171
|
170 180
....*....|....*....|
gi 2048025527 1078 iwdLLLKYRQGRTIILSTHH 1097
Cdd:PRK13538 172 ---LAQHAEQGGMVILTTHQ 188
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
904-1120 |
6.42e-19 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 92.94 E-value: 6.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVY---RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL-----------G 969
Cdd:TIGR03269 277 EPIIKVRNVSKRYisvDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvgdewvdmtkpG 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 970 KDIRSElsaIRQSLGVCPQHNVLFSMLTVEEHI---------WFYGRLKGLSEQQVKG----EIEQILQDtgLPHKrssr 1036
Cdd:TIGR03269 357 PDGRGR---AKRYIGILHQEYDLYPHRTVLDNLteaiglelpDELARMKAVITLKMVGfdeeKAEEILDK--YPDE---- 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1037 tsaLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHG 1114
Cdd:TIGR03269 428 ---LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREemEQTFIIVSHDMDFVLDVCDRAALMRDG 504
|
....*.
gi 2048025527 1115 KLCCVG 1120
Cdd:TIGR03269 505 KIVKIG 510
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
908-1121 |
6.85e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 88.64 E-value: 6.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 908 YIENLVKVYrHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVC- 986
Cdd:COG4674 12 YVEDLTVSF-DGFK-ALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLGIGr 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 ----PqhNVlFSMLTVEEH----------IW--FYGRLKGlseqQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSV 1050
Cdd:COG4674 90 kfqkP--TV-FEELTVFENlelalkgdrgVFasLFARLTA----EERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEI 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1051 ALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:COG4674 163 GMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGS 233
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
907-1128 |
6.97e-19 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 88.92 E-value: 6.97e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHGKKL-AVDgltLGFYEGQITSFLGHNGAGKTTTMSILTGLFP----PTSGTAYI---------LGKDI 972
Cdd:PRK09984 5 IRVEKLAKTFNQHQALhAVD---LNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdksAGSHIELLgrtvqregrLARDI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 973 RSElsaiRQSLGVCPQHNVLFSMLTVEEHI---------WFYGRLKGLSEQQvKGEIEQILQDTGLPHKRSSRTSALSGG 1043
Cdd:PRK09984 82 RKS----RANTGYIFQQFNLVNRLSVLENVligalgstpFWRTCFSWFTREQ-KQRALQALTRVGMVHFAHQRVSTLSGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1044 MQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQndGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
....*..
gi 2048025527 1122 SLYLKNQ 1128
Cdd:PRK09984 237 SQQFDNE 243
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
910-1096 |
7.81e-19 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 87.91 E-value: 7.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLVKVYRHGKKLA--------VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI-------RS 974
Cdd:PRK10584 4 ENIVEVHHLKKSVGqgehelsiLTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLhqmdeeaRA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 975 ELSAirQSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAF 1054
Cdd:PRK10584 84 KLRA--KHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2048025527 1055 VGGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTH 1096
Cdd:PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLfsLNREHGTTLILVTH 205
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1943-2133 |
8.21e-19 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 86.78 E-value: 8.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:PRK13538 2 LEARNLA--CERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVCDVAewgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEA---LAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156
|
170 180 190
....*....|....*....|....*....|.
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSH 2133
Cdd:PRK13538 157 FTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
923-1138 |
8.61e-19 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 93.27 E-value: 8.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFSMLTVEEH 1001
Cdd:TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDiDRHTLRQFINYLPQEPYIFSGSILENL 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1002 IwfYGRLKGLSEQQV---------KGEIEQILQdtGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDP 1072
Cdd:TIGR01193 569 L--LGAKENVSQDEIwaaceiaeiKDDIENMPL--GYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1073 YARRGIWDLLLKYrQGRTIILSTHHMDEADiLGDRIAIISHGKLCCVGSSLYLKNQlgTGYYLTLV 1138
Cdd:TIGR01193 645 ITEKKIVNNLLNL-QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR--NGFYASLI 706
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1969-2152 |
1.02e-18 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 92.00 E-value: 1.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1969 PGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGK--SILREIDEVHQNMGYCP---QFDSINELLTGRE-----HL 2038
Cdd:COG1129 277 AGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKpvRIRSPRDAIRAGIAYVPedrKGEGLVLDLSIREnitlaSL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2039 ELYAVLRGIPEKEVCDVAEWGIRKLGlVKYA--DKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWN 2116
Cdd:COG1129 357 DRLSRGGLLDRRRERALAEEYIKRLR-IKTPspEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYR 435
|
170 180 190
....*....|....*....|....*....|....*.
gi 2048025527 2117 CIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG1129 436 LIRELAAEGKAVIVISSELPELLGLSDRILVMREGR 471
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
1943-2152 |
1.11e-18 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 85.51 E-value: 1.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlREID--EVHQNMG 2020
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL-RDLDleSLRKNIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQ----F-DSINE-LLtgrehlelyavlrgipekevcdvaewgirklglvkyadkaagsySGGNMRKLSTAMALIGAP 2094
Cdd:cd03228 80 YVPQdpflFsGTIREnIL--------------------------------------------SGGQRQRIAIARALLRDP 115
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2095 PVVFLDEPTTGMDPKARRALWNCIHSvIKEGRSVVLTSHSMEECEaLCTRMAIMVNGR 2152
Cdd:cd03228 116 PILILDEATSALDPETEALILEALRA-LAKGKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
920-1116 |
1.12e-18 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 86.97 E-value: 1.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 920 KKLAVDGLTLGF-YEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK-----DIRSELSAIRQSLGVCPQHNVLF 993
Cdd:cd03297 8 KRLPDFTLKIDFdLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfdsRKKINLPPQQRKIGLVFQQYALF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 SMLTVEEHIWFygRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPY 1073
Cdd:cd03297 88 PHLNVRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2048025527 1074 ARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:cd03297 166 LRLQLLPELkqIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1942-2158 |
1.44e-18 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 87.26 E-value: 1.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGK--SILREIDEVHQNM 2019
Cdd:PRK10895 3 TLTAKNLAKAYKGRR--VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEdiSLLPLHARARRGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQFDSINELLTGREHleLYAVL---RGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPV 2096
Cdd:PRK10895 81 GYLPQEASIFRRLSVYDN--LMAVLqirDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2097 VFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS 2158
Cdd:PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
904-1116 |
2.85e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 87.38 E-value: 2.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQS 982
Cdd:PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEEtVWDVRRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQH-NVLFSMLTVEEHIWFygrlkGLSEQQVKGE-----IEQILQDTGL-------PHKrssrtsaLSGGmqRKLS 1049
Cdd:PRK13635 83 VGMVFQNpDNQFVGATVQDDVAF-----GLENIGVPREemverVDQALRQVGMedflnrePHR-------LSGG--QKQR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1050 VALAFVGGS--KVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEAdILGDRIAIISHGKL 1116
Cdd:PRK13635 149 VAIAGVLALqpDIIILDEATSMLDPRGRREVLETVrqLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEI 218
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
909-1121 |
3.13e-18 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 88.60 E-value: 3.13e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLavDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQSLGVCPQ 988
Cdd:PRK10851 5 IANIKKSFGRTQVL--NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV-SRLHARDRKVGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIWF----YGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILD 1064
Cdd:PRK10851 82 HYALFRHMTVFDNIAFgltvLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1065 EPTAGVDPYARRGIWDLL------LKYrqgrTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK10851 162 EPFGALDAQVRKELRRWLrqlheeLKF----TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
916-1116 |
3.36e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 87.11 E-value: 3.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQSLGVCPQH-NVLF 993
Cdd:PRK13648 17 YQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDnFEKLRKHIGIVFQNpDNQF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 SMLTVEEHIWFygrlkGLSEQQV-----KGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:PRK13648 97 VGSIVKYDVAF-----GLENHAVpydemHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATS 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1069 GVDPYARRGIWDLLLKYRQGR--TIILSTHHMDEAdILGDRIAIISHGKL 1116
Cdd:PRK13648 172 MLDPDARQNLLDLVRKVKSEHniTIISITHDLSEA-MEADHVIVMNKGTV 220
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1942-2152 |
3.43e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 87.21 E-value: 3.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI---LREIDEVHQN 2018
Cdd:PRK13636 5 ILKVEELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKLRES 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2019 MGYCPQfDSINELLTGR--EHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPV 2096
Cdd:PRK13636 84 VGMVFQ-DPDNQLFSASvyQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2097 VFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK13636 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATHDIDIVPLYCDNVFVMKEGR 219
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
916-1097 |
3.59e-18 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 85.10 E-value: 3.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSM 995
Cdd:TIGR01189 8 CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 996 LTVEEHIWFYGRLKGlSEQQvkgEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYAR 1075
Cdd:TIGR01189 88 LSALENLHFWAAIHG-GAQR---TIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGV 163
|
170 180
....*....|....*....|...
gi 2048025527 1076 RGIWDLLLKY-RQGRTIILSTHH 1097
Cdd:TIGR01189 164 ALLAGLLRAHlARGGIVLLTTHQ 186
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
1970-2160 |
3.86e-18 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 85.85 E-value: 3.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1970 GECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHqNMGYCPQFDSINELLTGREHLELYAVLRGIP- 2048
Cdd:cd03299 25 GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR-DISYVPQNYALFPHMTVYKNIAYGLKKRKVDk 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2049 ---EKEVCDVAEwgirKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEG 2125
Cdd:cd03299 104 keiERKVLEIAE----MLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF 179
|
170 180 190
....*....|....*....|....*....|....*.
gi 2048025527 2126 RSVVL-TSHSMEECEALCTRMAIMVNGRFRCLGSVQ 2160
Cdd:cd03299 180 GVTVLhVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
917-1114 |
3.94e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 86.29 E-value: 3.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSElSAIRqslGVCPQHNVLFSML 996
Cdd:PRK11248 10 DYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-GAER---GVVFQNEGLLPWR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 997 TVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARR 1076
Cdd:PRK11248 86 NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRE 165
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2048025527 1077 GIWDLLLK--YRQGRTIILSTHHMDEADILGDRIAIISHG 1114
Cdd:PRK11248 166 QMQTLLLKlwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
1967-2133 |
4.94e-18 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 84.22 E-value: 4.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTG--DTLVTSGEAFLAGK----SILREIdevhqnmGYCPQFDSINELLTGREHLEL 2040
Cdd:cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGrkTAGVITGEILINGRpldkNFQRST-------GYVEQQDVHSPNLTVREALRF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2041 YAVLRGIpekevcdvaewgirklglvkyadkaagsySGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHS 2120
Cdd:cd03232 103 SALLRGL-----------------------------SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKK 153
|
170
....*....|...
gi 2048025527 2121 VIKEGRSVVLTSH 2133
Cdd:cd03232 154 LADSGQAILCTIH 166
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1942-2166 |
5.23e-18 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 88.35 E-value: 5.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI------LREIDEV 2015
Cdd:PRK11607 19 LLEIRNLTKSFD--GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLshvppyQRPINMM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQNMGYCPQFDSINELLTGREHLELyavlrgiPEKEVCD-VAEwgirKLGLV---KYADKAAGSYSGGNMRKLSTAMALI 2091
Cdd:PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKL-------PKAEIASrVNE----MLGLVhmqEFAKRKPHQLSGGQRQRVALARSLA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2092 GAPPVVFLDEPTTGMDPKAR-RALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS----VQHLKNRF 2166
Cdd:PRK11607 166 KRPKLLLLDEPMGALDKKLRdRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEpeeiYEHPTTRY 245
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1959-2152 |
5.81e-18 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 85.81 E-value: 5.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1959 AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYCPQFDSI---------- 2028
Cdd:PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVrlfremtvie 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2029 NELLTGREHLE--LYAVLRGIP-----EKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDE 2101
Cdd:PRK11300 100 NLLVAQHQQLKtgLFSGLLKTPafrraESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2102 PTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK11300 180 PAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
1943-2133 |
7.14e-18 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 84.08 E-value: 7.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:cd03231 1 LEADELT--CERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGipeKEVCDVAewgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:cd03231 79 GHAPGIKTTLSVLENLRFWHADHS---DEQVEEA---LARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152
|
170 180 190
....*....|....*....|....*....|.
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSH 2133
Cdd:cd03231 153 TTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
916-1135 |
7.18e-18 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 85.23 E-value: 7.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFS 994
Cdd:cd03252 10 YKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGVVLQENVLFN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 995 MLTVE-----------EHIWFYGRLKGLSE--QQVKGEIEQILQDTGlphkrssrtSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:cd03252 90 RSIRDnialadpgmsmERVIEAAKLAGAHDfiSELPEGYDTIVGEQG---------AGLSGGQRQRIAIARALIHNPRIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 1062 ILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMdEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYL 1135
Cdd:cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1913-2167 |
8.06e-18 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 90.28 E-value: 8.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1913 LTKLGALGEEDEDVARERQRIVHGLGHGDIlELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG 1992
Cdd:COG2274 445 LERLDDILDLPPEREEGRSKLSLPRLKGDI-ELENVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLG 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1993 DTLVTSGEAFLAGKSIlREID--EVHQNMGYCPQfDsiNELLTG--REHLELYAvlRGIPEKEVCDVAewgiRKLGLVKY 2068
Cdd:COG2274 524 LYEPTSGRILIDGIDL-RQIDpaSLRRQIGVVLQ-D--VFLFSGtiRENITLGD--PDATDEEIIEAA----RLAGLHDF 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2069 ADKAAGSY-----------SGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSvIKEGRSVVLTSHSMeE 2137
Cdd:COG2274 594 IEALPMGYdtvvgeggsnlSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRR-LLKGRTVIIIAHRL-S 671
|
250 260 270
....*....|....*....|....*....|
gi 2048025527 2138 CEALCTRMAIMVNGRFRCLGSVQHLKNRFG 2167
Cdd:COG2274 672 TIRLADRIIVLDKGRIVEDGTHEELLARKG 701
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
911-1105 |
9.60e-18 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 84.87 E-value: 9.60e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 911 NLVKVYRHGKkLAVDGL---TLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIR-----QS 982
Cdd:PRK11629 10 NLCKRYQEGS-VQTDVLhnvSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKaelrnQK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVI 1062
Cdd:PRK11629 89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2048025527 1063 LDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILG 1105
Cdd:PRK11629 169 ADEPTGNLDARNADSIFQLLgeLNRLQGTAFLVVTHDLQLAKRMS 213
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
904-1120 |
1.11e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 89.07 E-value: 1.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKD---IRSELSAiR 980
Cdd:PRK09700 3 TPYISMAGIGKSF--GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINynkLDHKLAA-Q 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 981 QSLGVCPQHNVLFSMLTVEEHIwFYGRLK-----GL-----SEQQVKGEIeqILQDTGLPHKRSSRTSALSGGMQRKLSV 1050
Cdd:PRK09700 80 LGIGIIYQELSVIDELTVLENL-YIGRHLtkkvcGVniidwREMRVRAAM--MLLRVGLKVDLDEKVANLSISHKQMLEI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 1051 ALAFVGGSKVVILDEPTAGVdpyARRGIWDLLLKYRQ----GRTIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:PRK09700 157 AKTLMLDAKVIIMDEPTSSL---TNKEVDYLFLIMNQlrkeGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
1943-2153 |
1.64e-17 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 82.36 E-value: 1.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMGYC 2022
Cdd:cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQ----FDSinellTGREHLelyavlrgipekevcdvaewGIRklglvkyadkaagsYSGGNMRKLSTAMALIGAPPVVF 2098
Cdd:cd03247 81 NQrpylFDT-----TLRNNL--------------------GRR--------------FSGGERQRLALARILLQDAPIVL 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2099 LDEPTTGMDPKARRALWNCIHSVIKEgRSVVLTSHSMEECEALcTRMAIMVNGRF 2153
Cdd:cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITHHLTGIEHM-DKILFLENGKI 174
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
909-1116 |
2.38e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 84.76 E-value: 2.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKL-AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQSLGVC 986
Cdd:PRK13642 7 VENLVFKYEKESDVnQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEnVWNLRRKIGMV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQH-NVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDE 1065
Cdd:PRK13642 87 FQNpDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1066 PTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEAdILGDRIAIISHGKL 1116
Cdd:PRK13642 167 STSMLDPTGRQEIMRVIheIKEKYQLTVLSITHDLDEA-ASSDRILVMKAGEI 218
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
931-1121 |
2.53e-17 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 88.18 E-value: 2.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 931 FYEGQITSFLGHNGAGKTTTMSILTGLFPP---TSGTAYILGKDIrsELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYGR 1007
Cdd:TIGR00955 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPI--DAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1008 LK---GLSEQQVKGEIEQILQDTGLPHKRSSRTSA------LSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGI 1078
Cdd:TIGR00955 126 LRmprRVTKKEKRERVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV 205
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2048025527 1079 WDLLLKYRQGRTIILSTHHMDEADI--LGDRIAIISHGKLCCVGS 1121
Cdd:TIGR00955 206 VQVLKGLAQKGKTIICTIHQPSSELfeLFDKIILMAEGRVAYLGS 250
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1942-2153 |
2.85e-17 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 81.71 E-value: 2.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTkvfkrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILRE--IDEVHQNM 2019
Cdd:cd03215 4 VLEVRGLS------VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRspRDAIRAGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQfDSINELLTG----REHLELYAVLrgipekevcdvaewgirklglvkyadkaagsySGGNMRKLSTAMALIGAPP 2095
Cdd:cd03215 78 AYVPE-DRKREGLVLdlsvAENIALSSLL--------------------------------SGGNQQKVVLARWLARDPR 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2096 VVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:cd03215 125 VLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
907-1121 |
2.87e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 84.27 E-value: 2.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI--RSELSAIRQSLG 984
Cdd:PRK13644 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTgdFSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 985 VCPQH-NVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVIL 1063
Cdd:PRK13644 81 IVFQNpETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1064 DEPTAGVDPYARRGIWDLLLK-YRQGRTIILSTHHMDEADIlGDRIAIISHGKLCCVGS 1121
Cdd:PRK13644 161 DEVTSMLDPDSGIAVLERIKKlHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGE 218
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
919-1122 |
3.27e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 83.42 E-value: 3.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 919 GKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLF-----PPTSGTAYILGKDI-RSELSAIRQSLGVCPQHNVL 992
Cdd:PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDIfKMDVIELRRRVQMVFQIPNP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 993 FSMLTVEEHIWFYGRLKGL--SEQQVKGEIEQILQDTGLPHKRSSRTSA----LSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:PRK14247 94 IPNLSIFENVALGLKLNRLvkSKKELQERVRWALEKAQLWDEVKDRLDApagkLSGGQQQRLCIARALAFQPEVLLADEP 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1067 TAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSS 1122
Cdd:PRK14247 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
897-1116 |
3.76e-17 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 83.55 E-value: 3.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 897 EEEPAHLEPGVYIENLvKVYrHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTT---TMSILTGLFPP--TSGTAYILGKD 971
Cdd:COG1117 2 TAPASTLEPKIEVRNL-NVY-YGDKQALKDINLDIPENKVTALIGPSGCGKSTllrCLNRMNDLIPGarVEGEILLDGED 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 972 IRS---ELSAIRQSLGVCPQHNVLFSMlTVEEHIwFYG-RLKGLSEQQVKGEI-EQILQDTGLP----HKRSSRTSALSG 1042
Cdd:COG1117 80 IYDpdvDVVELRRRVGMVFQKPNPFPK-SIYDNV-AYGlRLHGIKSKSELDEIvEESLRKAALWdevkDRLKKSALGLSG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 1043 GMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG1117 158 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTHNMQQAARVSDYTAFFYLGEL 231
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1942-2136 |
4.05e-17 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 82.41 E-value: 4.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQkPAVDRLCVGIPPGE-CFgLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR----EIDEVH 2016
Cdd:COG2884 1 MIRFENVSKRYPGGR-EALSDVSLEIEKGEfVF-LTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlkrrEIPYLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2017 QNMGYCPQ-FdsinELLTGR---EHLELYAVLRGIPEKEV-CDVAEWgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALI 2091
Cdd:COG2884 79 RRIGVVFQdF----RLLPDRtvyENVALPLRVTGKSRKEIrRRVREV-LDLVGLSDKAKALPHELSGGEQQRVAIARALV 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2048025527 2092 GAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSME 2136
Cdd:COG2884 154 NRPELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLE 198
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
907-1116 |
4.43e-17 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 82.83 E-value: 4.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKvyRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILG---KDIRSELSAIRQSL 983
Cdd:PRK09493 2 IEFKNVSK--HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlkvNDPKVDERLIRQEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 984 GVCPQHNVLFSMLTVEEHIWFyG--RLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:PRK09493 80 GMVFQQFYLFPHLTALENVMF-GplRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1062 ILDEPTAGVDPYARRGIwdllLKYRQ-----GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK09493 159 LFDEPTSALDPELRHEV----LKVMQdlaeeGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
911-1135 |
5.47e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 83.17 E-value: 5.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 911 NLVKVYRH-GKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFP------PTSGTAYILGKDI-RSELSAIRQS 982
Cdd:PRK14246 12 NISRLYLYiNDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIfQIDAIKLRKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQ-QVKGEIEQILQDTGL---PHKR-SSRTSALSGGMQRKLSVALAFVGG 1057
Cdd:PRK14246 92 VGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKrEIKKIVEECLRKVGLwkeVYDRlNSPASQLSGGQQQRLTIARALALK 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1058 SKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYL----KNQLGTGY 1133
Cdd:PRK14246 172 PKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIftspKNELTEKY 251
|
..
gi 2048025527 1134 YL 1135
Cdd:PRK14246 252 VI 253
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1942-2162 |
5.93e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 83.31 E-value: 5.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILRE-IDEVHQNMG 2020
Cdd:PRK13652 3 LIETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEnIREVRKFVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQfDSINELL--TGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVF 2098
Cdd:PRK13652 82 LVFQ-NPDDQIFspTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2099 LDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL 2162
Cdd:PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
909-1116 |
8.17e-17 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 80.34 E-value: 8.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCP 987
Cdd:cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGYLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVLFSMlTVEEHIwfygrlkglseqqvkgeieqilqdtglphkrssrtsaLSGGMQRKLSVALAFVGGSKVVILDEPT 1067
Cdd:cd03246 83 QDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPN 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1068 AGVDPYARRGIWDLLLKYR-QGRTIILSTHHMdEADILGDRIAIISHGKL 1116
Cdd:cd03246 125 SHLDVEGERALNQAIAALKaAGATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
1943-2152 |
8.74e-17 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 80.34 E-value: 8.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGkSILREIDEVH--QNMG 2020
Cdd:cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG-ADISQWDPNElgDHVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQFDsinELLTGrehlelyavlrgipekevcDVAEwGIrklglvkyadkaagsYSGGNMRKLSTAMALIGAPPVVFLD 2100
Cdd:cd03246 80 YLPQDD---ELFSG-------------------SIAE-NI---------------LSGGQRQRLGLARALYGNPRILVLD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2101 EPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEAlCTRMAIMVNGR 2152
Cdd:cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS-ADRILVLEDGR 172
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
909-1116 |
8.83e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 86.27 E-value: 8.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTaYILGKDIRselsairqsLGVCPQ 988
Cdd:COG0488 318 LEGLSKSY--GDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGT-VKLGETVK---------IGYFDQ 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSM-LTVEEHIWfygrlkGLSEQQVKGEIEQILQDTGLPHKR-SSRTSALSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:COG0488 386 HQEELDPdKTVLDELR------DGAPGGTEQEVRGYLGRFLFSGDDaFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEP 459
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1067 TAGVDPYARRGIWDLLLKYrQGrTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG0488 460 TNHLDIETLEALEEALDDF-PG-TVLLVSHDRYFLDRVATRILEFEDGGV 507
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
917-1116 |
8.99e-17 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 82.32 E-value: 8.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIR--------------SELSAIRQS 982
Cdd:PRK10619 14 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlkvadkNQLRLLRTR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQHNVLFSMLTVEEHIWFYG-RLKGLSEQQVKGEIEQILQDTGLPHK-RSSRTSALSGGMQRKLSVALAFVGGSKV 1060
Cdd:PRK10619 94 LTMVFQHFNLWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDERaQGKYPVHLSGGQQQRVSIARALAMEPEV 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1061 VILDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK10619 174 LLFDEPTSALDPELVGEVLRIMQQLaEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
907-1126 |
9.04e-17 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 84.39 E-value: 9.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKvyRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSelSAIRQSlGVC 986
Cdd:PRK11432 7 VVLKNITK--RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH--RSIQQR-DIC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 P--QHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILD 1064
Cdd:PRK11432 82 MvfQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1065 EPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS--SLYLK 1126
Cdd:PRK11432 162 EPLSNLDANLRRSMREKIreLQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSpqELYRQ 227
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
907-1115 |
9.59e-17 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 81.89 E-value: 9.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGV 985
Cdd:cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQHNVLFSMlTVEEHIwFYGRLkGLSEQQVKGEIEQ------ILQ-DTGLPHKRSSRTSALSGGMQRKLSVALAFVGGS 1058
Cdd:cd03251 81 VSQDVFLFND-TVAENI-AYGRP-GATREEVEEAARAanahefIMElPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLLLKYRQGRTII-----LSThhMDEAdilgDRIAIISHGK 1115
Cdd:cd03251 158 PILILDEATSALDTESERLVQAALERLMKNRTTFviahrLST--IENA----DRIVVLEDGK 213
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
923-1115 |
9.64e-17 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 85.83 E-value: 9.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIR---------SELSAIRQSLGVCPQhnvlf 993
Cdd:PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfngpkssqeAGIGIIHQELNLIPQ----- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 smLTVEEHIW----FYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAG 1069
Cdd:PRK10762 94 --LTIAENIFlgreFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDA 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2048025527 1070 VDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:PRK10762 172 LTDTETESLFRVIRELKsQGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
1943-2152 |
2.46e-16 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 80.69 E-value: 2.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL-----------RE 2011
Cdd:cd03256 1 IEVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINklkgkalrqlrRQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2012 IDEVHQNMGYCPQFDSINELLTGR--EHLELYAVLRGIPEKEVCDVAEwGIRKLGLVKYADKAAGSYSGGNMRKLSTAMA 2089
Cdd:cd03256 80 IGMIFQQFNLIERLSVLENVLSGRlgRRSTWRSLFGLFPKEEKQRALA-ALERVGLLDKAYQRADQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2090 LIGAPPVVFLDEPTTGMDPKARRALWNCIHSV-IKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRInREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
909-1116 |
2.66e-16 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 80.95 E-value: 2.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrHGKKLaVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTayILGKDI-----------RSELS 977
Cdd:PRK11264 6 VKNLVKKF-HGQTV-LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT--IRVGDItidtarslsqqKGLIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIRQSLGVCPQHNVLFSMLTVEEHIwFYGRL--KGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFV 1055
Cdd:PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENI-IEGPVivKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1056 GGSKVVILDEPTAGVDPYArrgIWDLLLKYRQ----GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK11264 161 MRPEVILFDEPTSALDPEL---VGEVLNTIRQlaqeKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
910-1127 |
2.68e-16 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 81.35 E-value: 2.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLVKV----YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQ 981
Cdd:PRK11831 5 ANLVDMrgvsFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsRSRLYTVRK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGVCPQHNVLFSMLTVEEHIWFYGRLKG-LSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKV 1060
Cdd:PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTqLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1061 VILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKN 1127
Cdd:PRK11831 165 IMFDEPFVGQDPITMGVLVKLIseLNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
924-1117 |
2.76e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 84.28 E-value: 2.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 924 VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI--RSELSAIRQS--------------LGVCP 987
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvtRSPQDGLANGivyisedrkrdglvLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVlfSMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDtglphKRSSRTSA---LSGGMQRKLSVALAFVGGSKVVILD 1064
Cdd:PRK10762 348 KENM--SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI-----KTPSMEQAiglLSGGNQQKVAIARGLMTRPKVLILD 420
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1065 EPTAGVDPYARRGIWDLLLKYRQ-GRTIILSTHHMDEadILG--DRIAIISHGKLC 1117
Cdd:PRK10762 421 EPTRGVDVGAKKEIYQLINQFKAeGLSIILVSSEMPE--VLGmsDRILVMHEGRIS 474
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
900-1116 |
2.86e-16 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 80.21 E-value: 2.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 900 PAHLEPGVYIENLVKVYR-HGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELS 977
Cdd:cd03248 5 PDHLKGIVKFQNVTFAYPtRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQyEHK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIRQSLGVCPQHNVLFSMlTVEEHIwFYGrLKGLSEQQVKGEIEQILQDT---GLPHKRSS----RTSALSGGMQRKLSV 1050
Cdd:cd03248 85 YLHSKVSLVGQEPVLFAR-SLQDNI-AYG-LQSCSFECVKEAAQKAHAHSfisELASGYDTevgeKGSQLSGGQKQRVAI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1051 ALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADiLGDRIAIISHGKL 1116
Cdd:cd03248 162 ARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1970-2152 |
3.07e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 81.28 E-value: 3.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1970 GECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI---LREIDEVHQNMGYCPQfDSINELL--TGREHLELYAVL 2044
Cdd:PRK13639 28 GEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIkydKKSLLEVRKTVGIVFQ-NPDDQLFapTVEEDVAFGPLN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2045 RGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE 2124
Cdd:PRK13639 107 LGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186
|
170 180
....*....|....*....|....*...
gi 2048025527 2125 GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK13639 187 GITIIISTHDVDLVPVYADKVYVMSDGK 214
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
890-1116 |
3.08e-16 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 84.77 E-value: 3.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 890 NAGAVCIEEEPAHLEpgvyIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILG 969
Cdd:TIGR02203 318 DTGTRAIERARGDVE----FRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 970 KDIRS-ELSAIRQSLGVCPQHNVLFSMlTVEEHIwFYGRLKGLSEQqvkgEIEQILQDT-----------GLPHKRSSRT 1037
Cdd:TIGR02203 394 HDLADyTLASLRRQVALVSQDVVLFND-TIANNI-AYGRTEQADRA----EIERALAAAyaqdfvdklplGLDTPIGENG 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1038 SALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMdeADILG-DRIAIISHGKL 1116
Cdd:TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL--STIEKaDRIVVMDDGRI 545
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
909-1134 |
3.11e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 84.88 E-value: 3.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIR--SElSAIRQSLGVC 986
Cdd:PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAdySE-AALRQAISVV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNVLFSMlTVEEHiwfygrLKGLSEQQVKGEIEQILQDTGLPHKRSSRTS----------ALSGGMQRKLSVALAFVG 1056
Cdd:PRK11160 420 SQRVHLFSA-TLRDN------LLLAAPNASDEALIEVLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIARALLH 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1057 GSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTH------HMdeadilgDRIAIISHGKLCCVGSSLYLKNQLG 1130
Cdd:PRK11160 493 DAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHrltgleQF-------DRICVMDNGQIIEQGTHQELLAQQG 565
|
....
gi 2048025527 1131 tGYY 1134
Cdd:PRK11160 566 -RYY 568
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
1943-2152 |
3.29e-16 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 79.76 E-value: 3.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKrKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL----REIDEVHQN 2018
Cdd:cd03292 1 IEFINVTKTYP-NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgRAIPYLRRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2019 MGYCPQfDsiNELLTGR---EHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPP 2095
Cdd:cd03292 80 IGVVFQ-D--FRLLPDRnvyENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2096 VVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
926-1097 |
3.34e-16 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 79.46 E-value: 3.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 926 GLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFY 1005
Cdd:cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFW 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1006 GRLKGLSeqqvkgEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY 1085
Cdd:cd03231 98 HADHSDE------QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
|
170
....*....|...
gi 2048025527 1086 -RQGRTIILSTHH 1097
Cdd:cd03231 172 cARGGMVVLTTHQ 184
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1942-2176 |
3.78e-16 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 80.83 E-value: 3.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQK-PAVDrlcVGIPPGECFGLLGVNGAGKTTTFK----MLTGDTLVTSGEAFL------AGKsILR 2010
Cdd:PRK09984 4 IIRVEKLAKTFNQHQAlHAVD---LNIHHGEMVALLGPSGSGKSTLLRhlsgLITGDKSAGSHIELLgrtvqrEGR-LAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2011 EIDEVHQNMGYC-PQFDSINELlTGREHLeLYAVLRGIPEKEVC---------DVAEWGIRKLGLVKYADKAAGSYSGGN 2080
Cdd:PRK09984 80 DIRKSRANTGYIfQQFNLVNRL-SVLENV-LIGALGSTPFWRTCfswftreqkQRALQALTRVGMVHFAHQRVSTLSGGQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2081 MRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIK-EGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSV 2159
Cdd:PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQnDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
250
....*....|....*...
gi 2048025527 2160 QHLKN-RFGDGYTIILRV 2176
Cdd:PRK09984 238 QQFDNeRFDHLYRSINRV 255
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
917-1117 |
3.82e-16 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 84.11 E-value: 3.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKlaVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT-SGTAYILGK--DIRSELSAIRQSLGVCPQ----- 988
Cdd:TIGR02633 271 PHRKR--VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKpvDIRNPAQAIRAGIAMVPEdrkrh 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 ---------HNVLFSMLtveEHIWFYGRLKGLSEQQ-VKGEIEQILQDTGLPHKRSSRtsaLSGGMQRKLSVALAFVGGS 1058
Cdd:TIGR02633 349 givpilgvgKNITLSVL---KSFCFKMRIDAAAELQiIGSAIQRLKVKTASPFLPIGR---LSGGNQQKAVLAKMLLTNP 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKLC 1117
Cdd:TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLaQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
920-1121 |
4.30e-16 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 80.36 E-value: 4.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 920 KKLAVDG----LTLGFYEGQITSFLGHNGAGKTTTMSILTGLFpPTSGTAYILGKDIR----SELSAIRQSLgvCPQHNV 991
Cdd:PRK03695 4 NDVAVSTrlgpLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEawsaAELARHRAYL--SQQQTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 992 LFSMltveeHIWFYGRL---KGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGG-MQRklsVALAFV---------GGS 1058
Cdd:PRK03695 81 PFAM-----PVFQYLTLhqpDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGeWQR---VRLAAVvlqvwpdinPAG 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1059 KVVILDEPTAGVDpYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK03695 153 QLLLLDEPMNSLD-VAQQAALDRLLSElcQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
1967-2151 |
6.52e-16 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 79.43 E-value: 6.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDE---VHQNMGYCPqfdsineLLTGREHLELY-- 2041
Cdd:TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDrmvVFQNYSLLP-------WLTVRENIALAvd 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2042 AVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSV 2121
Cdd:TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160
|
170 180 190
....*....|....*....|....*....|.
gi 2048025527 2122 IKEGR-SVVLTSHSMEECEALCTRMAIMVNG 2151
Cdd:TIGR01184 161 WEEHRvTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1942-2153 |
9.19e-16 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 82.76 E-value: 9.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFkrkqkPAV---DRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI-LREIDE--- 2014
Cdd:COG1129 4 LLEMRGISKSF-----GGVkalDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVrFRSPRDaqa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 -----VHQNMGYCPQFdSINE-LLTGREhlelyaVLRG--IPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLST 2086
Cdd:COG1129 79 agiaiIHQELNLVPNL-SVAEnIFLGRE------PRRGglIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2087 AMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:COG1129 152 ARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRL 218
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
923-1121 |
9.47e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 80.66 E-value: 9.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYI----LGKDIRSELSAI-------------RQSLGV 985
Cdd:PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyIGDKKNNHELITnpyskkiknfkelRRRVSM 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 C---PQHNvLFSMlTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTS-ALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:PRK13631 121 VfqfPEYQ-LFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPfGLSGGQKRRVAIAGILAIQPEIL 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1062 ILDEPTAGVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK13631 199 IFDEPTAGLDPKGEHEMMQLILDAKaNNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1956-2159 |
1.08e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 80.09 E-value: 1.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1956 QKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAG----------KSILREIDEVHQnmgYcPQF 2025
Cdd:PRK13637 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGvditdkkvklSDIRKKVGLVFQ---Y-PEY 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2026 DSINEllTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLV--KYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPT 2103
Cdd:PRK13637 95 QLFEE--TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDyeDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2104 TGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSV 2159
Cdd:PRK13637 173 AGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
909-1116 |
1.12e-15 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 79.46 E-value: 1.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHG-------KKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELS 977
Cdd:TIGR02769 5 VRDVTHTYRTGglfgakqRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLyqldRKQRR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIRQSL---------GVCPQHNVLFSMLTVEEHiwfygrLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSA-LSGGMQRK 1047
Cdd:TIGR02769 85 AFRRDVqlvfqdspsAVNPRMTVRQIIGEPLRH------LTSLDESEQKARIAELLDMVGLRSEDADKLPRqLSGGQLQR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1048 LSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQafGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
926-1116 |
1.18e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 82.41 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 926 GLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGV--CPQHNVLFSMLTVEEHIW 1003
Cdd:PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIylVPQEPLLFPNLSVKENIL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1004 FygrlkGLSEQQV-KGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL 1082
Cdd:PRK15439 109 F-----GLPKRQAsMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183
|
170 180 190
....*....|....*....|....*....|....*
gi 2048025527 1083 LKYR-QGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK15439 184 RELLaQGVGIVFISHKLPEIRQLADRISVMRDGTI 218
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1957-2152 |
1.28e-15 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 78.90 E-value: 1.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1957 KPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREID-EVHQNMGYCPQFDSINELLTGR 2035
Cdd:PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSrQLARRLALLPQHHLTPEGITVR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2036 E--------HLELYAVLRGIPEKEVcdvaEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMD 2107
Cdd:PRK11231 95 ElvaygrspWLSLWGRLSAEDNARV----NQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2048025527 2108 PKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK11231 171 INHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
1903-2162 |
1.33e-15 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 82.50 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1903 FFIKARSVSKLTKLGALGEEDEDVARERQRIVHGLGHGDIlELRQLTkVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAG 1982
Cdd:COG4988 298 YHARANGIAAAEKIFALLDAPEPAAPAGTAPLPAAGPPSI-ELEDVS-FSYPGGRPALDGLSLTIPPGERVALVGPSGAG 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1983 KTTTFKMLTGDTLVTSGEAFLAGKSiLREIDE--VHQNMGYCPQ----F-DSInelltgREHLELYAvlRGIPEKEVCDV 2055
Cdd:COG4988 376 KSTLLNLLLGFLPPYSGSILINGVD-LSDLDPasWRRQIAWVPQnpylFaGTI------RENLRLGR--PDASDEELEAA 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2056 AewgiRKLGLVKYADKAAGSY-----------SGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSvIKE 2124
Cdd:COG4988 447 L----EAAGLDEFVAALPDGLdtplgeggrglSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRR-LAK 521
|
250 260 270
....*....|....*....|....*....|....*...
gi 2048025527 2125 GRSVVLTSHSMEECeALCTRMAIMVNGRFRCLGSVQHL 2162
Cdd:COG4988 522 GRTVILITHRLALL-AQADRILVLDDGRIVEQGTHEEL 558
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1969-2133 |
1.55e-15 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 83.62 E-value: 1.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1969 PGECFGLLGVNGAGKTTTFKMLTGDT---LVTSGEAFLAGksilREIDEVHQ-NMGYCPQFDSINELLTGREHLELYAVL 2044
Cdd:TIGR00956 788 PGTLTALMGASGAGKTTLLNVLAERVttgVITGGDRLVNG----RPLDSSFQrSIGYVQQQDLHLPTSTVRESLRFSAYL 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2045 R---GIPEKEVCDVAEWGIRKLGLVKYADKAAG-SYSGGNM---RKLSTAMALIGAPP-VVFLDEPTTGMDPKARRALWN 2116
Cdd:TIGR00956 864 RqpkSVSKSEKMEYVEEVIKLLEMESYADAVVGvPGEGLNVeqrKRLTIGVELVAKPKlLLFLDEPTSGLDSQTAWSICK 943
|
170
....*....|....*..
gi 2048025527 2117 CIHSVIKEGRSVVLTSH 2133
Cdd:TIGR00956 944 LMRKLADHGQAILCTIH 960
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
1934-2172 |
2.06e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 82.40 E-value: 2.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1934 VHGLGHGDILELRQLTKVFKRK-QKPAVDRLCVGIPPGECFGLLGVNGAGKTT-----TFKMLTGdtLVTSGEAFLAGKS 2007
Cdd:TIGR00955 14 VAQDGSWKQLVSRLRGCFCRERpRKHLLKNVSGVAKPGELLAVMGSSGAGKTTlmnalAFRSPKG--VKGSGSVLLNGMP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2008 IlrEIDEVHQNMGYCPQFDSINELLTGREHLELYAVLR---GIPEKEVCDVAEWGIRKLGLVKYADKAAG------SYSG 2078
Cdd:TIGR00955 92 I--DAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRmprRVTKKEKRERVDEVLQALGLRKCANTRIGvpgrvkGLSG 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2079 GNMRKLSTAMALIGAPPVVFLDEPTTGMDpkARRAlwnciHSVIK-------EGRSVVLTSH--SMEECEaLCTRMAIMV 2149
Cdd:TIGR00955 170 GERKRLAFASELLTDPPLLFCDEPTSGLD--SFMA-----YSVVQvlkglaqKGKTIICTIHqpSSELFE-LFDKIILMA 241
|
250 260
....*....|....*....|....
gi 2048025527 2150 NGRFRCLGSVQHLKNRFGD-GYTI 2172
Cdd:TIGR00955 242 EGRVAYLGSPDQAVPFFSDlGHPC 265
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
901-1109 |
2.65e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 78.15 E-value: 2.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 901 AHLEPGVYIENLVKVYRHGKklAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS-----GTAYILGKDI--- 972
Cdd:PRK14258 2 SKLIPAIKVNNLSFYYDTQK--ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIyer 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 973 RSELSAIRQSLG-VCPQHNvLFSMlTVEEHIWFYGRLKGLSEQ-QVKGEIEQILQDTGL----PHKRSSRTSALSGGMQR 1046
Cdd:PRK14258 80 RVNLNRLRRQVSmVHPKPN-LFPM-SVYDNVAYGVKIVGWRPKlEIDDIVESALKDADLwdeiKHKIHKSALDLSGGQQQ 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1047 KLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIA 1109
Cdd:PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIqsLRLRSELTMVIVSHNLHQVSRLSDFTA 222
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1942-2152 |
2.66e-15 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 77.47 E-value: 2.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFK-----RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGeaflagkSIL------- 2009
Cdd:COG4778 4 LLEVENLSKTFTlhlqgGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSG-------SILvrhdggw 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2010 --------REIDEVHQN-MGYCPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGL-VKYADKAAGSYSGG 2079
Cdd:COG4778 77 vdlaqaspREILALRRRtIGYVSQFLRVIPRVSALDVVAEPLLERGVDREEARARARELLARLNLpERLWDLPPATFSGG 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2080 NMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG4778 157 EQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
1956-2134 |
2.77e-15 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 81.64 E-value: 2.77e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1956 QKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG--DTLvtSGEAFLAGKSI--LREiDEVHQNMGYCPQ----FDS 2027
Cdd:TIGR02868 347 APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGllDPL--QGEVTLDGVPVssLDQ-DEVRRRVSVCAQdahlFDT 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2028 --INELLTGREHL---ELYAVLRGIpekevcDVAEWgIRKL--GLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLD 2100
Cdd:TIGR02868 424 tvRENLRLARPDAtdeELWAALERV------GLADW-LRALpdGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 496
|
170 180 190
....*....|....*....|....*....|....
gi 2048025527 2101 EPTTGMDPKARRALWNCIHSVIkEGRSVVLTSHS 2134
Cdd:TIGR02868 497 EPTEHLDAETADELLEDLLAAL-SGRTVVLITHH 529
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
910-1120 |
2.78e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 77.96 E-value: 2.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLvKVYrHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLF-----PPTSGTAYILGKDIRSE-LSAI--RQ 981
Cdd:PRK14267 8 VNL-RVY-YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLelneeARVEGEVRLFGRNIYSPdVDPIevRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGVCPQHNVLFSMLTVEEHIWFYGRLKGL--SEQQVKGEIEQILQDTGLPHKRSSR----TSALSGGMQRKLSVALAFV 1055
Cdd:PRK14267 86 EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALWDEVKDRlndyPSNLSGGQRQRLVIARALA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:PRK14267 166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1967-2137 |
3.50e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 78.62 E-value: 3.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTG-----DTLVTSGEAFLAGKSILREIDEVHQNMGYCPQFDS--------INELLT 2033
Cdd:PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGllqptEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPEsqlfeetvLKDVAF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2034 GREHLelyavlrGIPEKEVCDVAEWGIRKLGLVK-YADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARR 2112
Cdd:PRK13643 109 GPQNF-------GIPKEKAEKIAAEKLEMVGLADeFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181
|
170 180
....*....|....*....|....*
gi 2048025527 2113 ALWNCIHSVIKEGRSVVLTSHSMEE 2137
Cdd:PRK13643 182 EMMQLFESIHQSGQTVVLVTHLMDD 206
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
925-1116 |
3.52e-15 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 77.09 E-value: 3.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 925 DGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIR-QSLGVCPQH---------- 989
Cdd:COG4181 29 KGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLfaldEDARARLRaRHVGFVFQSfqllptltal 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 990 -NVlfsMLTVEehiwfygrLKGLSEQQVKGEieQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:COG4181 109 eNV---MLPLE--------LAGRRDARARAR--ALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPTG 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1069 GVDPYARRGIWDLL--LKYRQGRTIILSTHhmDEADIL-GDRIAIISHGKL 1116
Cdd:COG4181 176 NLDAATGEQIIDLLfeLNRERGTTLVLVTH--DPALAArCDRVLRLRAGRL 224
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1967-2154 |
4.36e-15 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 76.74 E-value: 4.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSiLREIDEVH------QNMGYCPQFDSINELLTGREHLEL 2040
Cdd:PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP-LHQMDEEAraklraKHVGFVFQSFMLIPTLNALENVEL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2041 YAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHS 2120
Cdd:PRK10584 112 PALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191
|
170 180 190
....*....|....*....|....*....|....*
gi 2048025527 2121 VIKE-GRSVVLTSHSmEECEALCTRMAIMVNGRFR 2154
Cdd:PRK10584 192 LNREhGTTLILVTHD-LQLAARCDRRLRLVNGQLQ 225
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
906-1125 |
4.81e-15 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 79.30 E-value: 4.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 906 GVYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELSAIRQSLGV 985
Cdd:PRK11000 3 SVTLRNVTKAY--GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM-NDVPPAERGVGM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQ---ILQdtgLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVI 1062
Cdd:PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQvaeVLQ---LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1063 LDEPTAGVDPYAR---RgIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYL 1125
Cdd:PRK11000 157 LDEPLSNLDAALRvqmR-IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1942-2152 |
5.99e-15 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 76.67 E-value: 5.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFK------MLTGDTLVTSGEAFLAGKSILREIDE- 2014
Cdd:PRK09493 1 MIEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRcinkleEITSGDLIVDGLKVNDPKVDERLIRQe 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 ---VHQNMGYCPQFDSINELLTGREHLelyavlRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALI 2091
Cdd:PRK09493 79 agmVFQQFYLFPHLTALENVMFGPLRV------RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2092 GAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR 213
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
940-1116 |
6.05e-15 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 76.54 E-value: 6.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 940 LGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAiRQSLGVCPQHNVLFSMLTVEEHIWF--YGRLKgLSEQQvK 1017
Cdd:PRK10771 31 LGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS-RRPVSMLFQENNLFSHLTVAQNIGLglNPGLK-LNAAQ-R 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1018 GEIEQILQDTGLPHKRSSRTSALSGGmQRKlSVALA--FVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGR--TIIL 1093
Cdd:PRK10771 108 EKLHAIARQMGIEDLLARLPGQLSGG-QRQ-RVALArcLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERqlTLLM 185
|
170 180
....*....|....*....|...
gi 2048025527 1094 STHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK10771 186 VSHSLEDAARIAPRSLVVADGRI 208
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
1958-2137 |
6.60e-15 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 75.35 E-value: 6.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1958 PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILreidevhqnmGYCPQFDSINELL--TGR 2035
Cdd:NF040873 6 PVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGARV----------AYVPQRSEVPDSLplTVR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2036 E--------HLELYAVLRGIPEKEVCDVAEwgirKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMD 2107
Cdd:NF040873 76 DlvamgrwaRRGLWRRLTRDDRAAVDDALE----RVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLD 151
|
170 180 190
....*....|....*....|....*....|....
gi 2048025527 2108 PKARRAlwncIHSVIKE----GRSVVLTSHSMEE 2137
Cdd:NF040873 152 AESRER----IIALLAEeharGATVVVVTHDLEL 181
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1942-2165 |
6.79e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 77.47 E-value: 6.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILRE-IDEVHQNMG 2020
Cdd:PRK13647 4 IIEVEDLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEnEKWVRSKVG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQfDSINELLTGR--EHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVF 2098
Cdd:PRK13647 83 LVFQ-DPDDQVFSSTvwDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2099 LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNR 2165
Cdd:PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
910-1109 |
7.59e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 77.13 E-value: 7.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLvKVYrHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSI---LTGLFPP--TSGTAYILGKDI---RSELSAIRQ 981
Cdd:PRK14243 14 ENL-NVY-YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrLNDLIPGfrVEGKVTFHGKNLyapDVDPVEVRR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGVCPQHNVLFSMlTVEEHIWFYGRLKG-------LSEQQVK-----GEIEQILQDTGLphkrssrtsALSGGMQRKLS 1049
Cdd:PRK14243 92 RIGMVFQKPNPFPK-SIYDNIAYGARINGykgdmdeLVERSLRqaalwDEVKDKLKQSGL---------SLSGGQQQRLC 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1050 VALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIA 1109
Cdd:PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTA 221
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1965-2170 |
9.41e-15 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 78.92 E-value: 9.41e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1965 VGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI-------LREIDE-----VHQNMGYCPQFDSINELL 2032
Cdd:PRK10070 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIakisdaeLREVRRkkiamVFQSFALMPHMTVLDNTA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2033 TGREhlelyavLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARR 2112
Cdd:PRK10070 129 FGME-------LAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2113 ALWN-CIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGY 2170
Cdd:PRK10070 202 EMQDeLVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1943-2158 |
1.19e-14 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 75.84 E-value: 1.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKqkPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILReIDEVHQNMGYC 2022
Cdd:cd03296 3 IEVRNVSKRFGDF--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD-VPVQERNVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREH----LELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVF 2098
Cdd:cd03296 80 FQHYALFRHMTVFDNvafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2099 LDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS 2158
Cdd:cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1956-2152 |
1.21e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 76.79 E-value: 1.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1956 QKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILRE-----IDEVHQNMGYCPQFDSiNE 2030
Cdd:PRK13641 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPEtgnknLKKLRKKVSLVFQFPE-AQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2031 LL--TGREHLELYAVLRGIPEKEVCDVA-EWgIRKLGLVK-YADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGM 2106
Cdd:PRK13641 98 LFenTVLKDVEFGPKNFGFSEDEAKEKAlKW-LKKVGLSEdLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2048025527 2107 DPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK13641 177 DPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
896-1116 |
1.68e-14 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 78.92 E-value: 1.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 896 IEEEPAHL-EPGVYIENLVkVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS 974
Cdd:COG3845 246 VEKAPAEPgEVVLEVENLS-VRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITG 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 975 ELSAIRQSLGVC-----PQHNVLFSMLTVEEHIWF-------YGRLKGLSEQQVKGEIEQILQD----TGLPHkrsSRTS 1038
Cdd:COG3845 325 LSPRERRRLGVAyipedRLGRGLVPDMSVAENLILgryrrppFSRGGFLDRKAIRAFAEELIEEfdvrTPGPD---TPAR 401
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1039 ALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG3845 402 SLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRdAGAAVLLISEDLDEILALSDRIAVMYEGRI 480
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
909-1116 |
1.73e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 78.95 E-value: 1.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAyILGKDIRselsairqsLGVCPQ 988
Cdd:COG0488 1 LENLSKSF--GGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEV-SIPKGLR---------IGYLPQ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIW----------------------FYGRLKGLSEQQVK----------GEIEQILQDTGLPHKRSSR 1036
Cdd:COG0488 69 EPPLDDDLTVLDTVLdgdaelraleaeleeleaklaePDEDLERLAELQEEfealggweaeARAEEILSGLGFPEEDLDR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1037 -TSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRgiW--DLLLKYRqGrTIILSTHhmDEA--DILGDRIAII 1111
Cdd:COG0488 149 pVSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIE--WleEFLKNYP-G-TVLVVSH--DRYflDRVATRILEL 222
|
....*
gi 2048025527 1112 SHGKL 1116
Cdd:COG0488 223 DRGKL 227
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1955-2152 |
1.94e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 75.89 E-value: 1.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1955 KQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREID--EVHQNMGYCPQfDSINELL 2032
Cdd:PRK13633 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENlwDIRNKAGMVFQ-NPDNQIV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2033 T---------GREHLelyavlrGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPT 2103
Cdd:PRK13633 100 AtiveedvafGPENL-------GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2104 TGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECeALCTRMAIMVNGR 2152
Cdd:PRK13633 173 AMLDPSGRREVVNTIKELNKKyGITIILITHYMEEA-VEADRIIVMDSGK 221
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
919-1116 |
2.57e-14 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 78.46 E-value: 2.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 919 GKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFSMlT 997
Cdd:PRK13657 346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTvTRASLRRNIAVVFQDAGLFNR-S 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 998 VEEHIWFyGR--------LKGLSEQQVKGEIEQilQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAG 1069
Cdd:PRK13657 425 IEDNIRV-GRpdatdeemRAAAERAQAHDFIER--KPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSA 501
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1070 VDPYARRGIWDLLLKYRQGRT--II---LSThhMDEAdilgDRIAIISHGKL 1116
Cdd:PRK13657 502 LDVETEAKVKAALDELMKGRTtfIIahrLST--VRNA----DRILVFDNGRV 547
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1943-2164 |
2.71e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 78.29 E-value: 2.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI--LREIDEVHQNMG 2020
Cdd:PRK09700 6 ISMAGIGKSFGPVH--ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYnkLDHKLAAQLGIG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQFDS-INELLTgrehLELYAVLRgIPEKEVC--DVAEWG---------IRKLGLVKYADKAAGSYSGGNMRKLSTAM 2088
Cdd:PRK09700 84 IIYQELSvIDELTV----LENLYIGR-HLTKKVCgvNIIDWRemrvraammLLRVGLKVDLDEKVANLSISHKQMLEIAK 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2089 ALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2164
Cdd:PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1902-2154 |
3.37e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 77.80 E-value: 3.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1902 RFFIKARSVSK-------LTKLgalgEEDEDVARERQ---RIVHG--LGhGDILELRQLTKVFKrkQKPAVDRLCVGIPP 1969
Cdd:COG0488 268 RFRAKARKAKQaqsrikaLEKL----EREEPPRRDKTveiRFPPPerLG-KKVLELEGLSKSYG--DKTLLDDLSLRIDR 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1970 GECFGLLGVNGAGKTTTFKMLTGDTLVTSGEaFLAGKSIlreidevhqNMGYCPQ-FDSINELLTGREHLELYAvlRGIP 2048
Cdd:COG0488 341 GDRIGLIGPNGAGKSTLLKLLAGELEPDSGT-VKLGETV---------KIGYFDQhQEELDPDKTVLDELRDGA--PGGT 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2049 EKEVCDVAE-WGIRKlglvKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRAL------Wncihsv 2121
Cdd:COG0488 409 EQEVRGYLGrFLFSG----DDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALeealddF------ 478
|
250 260 270
....*....|....*....|....*....|...
gi 2048025527 2122 ikEGrSVVLTSHSMEECEALCTRMAIMVNGRFR 2154
Cdd:COG0488 479 --PG-TVLLVSHDRYFLDRVATRILEFEDGGVR 508
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1942-2152 |
4.15e-14 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 75.05 E-value: 4.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKS--------ILREID 2013
Cdd:PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVlseetvwdVRRQVG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2014 EVHQNmgycP--QF------DSInelLTGREHlelyavlRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLS 2085
Cdd:PRK13635 85 MVFQN----PdnQFvgatvqDDV---AFGLEN-------IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2086 TAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLT-SHSMEECeALCTRMAIMVNGR 2152
Cdd:PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSiTHDLDEA-AQADRVIVMNKGE 217
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
904-1116 |
4.74e-14 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 74.48 E-value: 4.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYRHGKklAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA-YILGKDIRSELSAI--- 979
Cdd:TIGR02323 1 KPLLQVSGLSKSYGGGK--GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAtYIMRSGAELELYQLsea 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 980 ------RQSLGVCPQH-------------NVLFSMLTV-EEHiwfYGRLKGLSEQQV-KGEIEQILQDTgLPhkrssrtS 1038
Cdd:TIGR02323 79 errrlmRTEWGFVHQNprdglrmrvsagaNIGERLMAIgARH---YGNIRATAQDWLeEVEIDPTRIDD-LP-------R 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1039 ALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLrgLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
933-1116 |
5.83e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 77.13 E-value: 5.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 933 EGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI--RSELSAIRQSLGVCPQH---NVLFSMLTVEEHIWFY-- 1005
Cdd:PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIspRSPLDAVKKGMAYITESrrdNGFFPNFSIAQNMAISrs 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1006 ---GRLKGL------SEQQVKGEIEQILqdtgLPHKRSS---RTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPY 1073
Cdd:PRK09700 368 lkdGGYKGAmglfheVDEQRTAENQREL----LALKCHSvnqNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2048025527 1074 ARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK09700 444 AKAEIYKVMRQLaDDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1965-2103 |
5.88e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 77.03 E-value: 5.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1965 VGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKsiLReidevhqnMGYCPQFDSINELLTGRE-----HLE 2039
Cdd:COG0488 19 LSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKG--LR--------IGYLPQEPPLDDDLTVLDtvldgDAE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2040 LYAVLR---------GIPEKEVCDVAE----------WGIR--------KLGL-VKYADKAAGSYSGGNMRKLSTAMALI 2091
Cdd:COG0488 89 LRALEAeleeleaklAEPDEDLERLAElqeefealggWEAEaraeeilsGLGFpEEDLDRPVSELSGGWRRRVALARALL 168
|
170
....*....|..
gi 2048025527 2092 GAPPVVFLDEPT 2103
Cdd:COG0488 169 SEPDLLLLDEPT 180
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
924-1120 |
6.07e-14 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 76.42 E-value: 6.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 924 VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSeLSA--IRQSLGVCPQHNVL---FSMLTV 998
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA-LSAraASRRVASVPQDTSLsfeFDVRQV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 999 EE-----HIwfyGRLKGLSEQQvKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDpy 1073
Cdd:PRK09536 98 VEmgrtpHR---SRFDTWTETD-RAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD-- 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1074 ARRGIWDLLLKYR---QGRTIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:PRK09536 172 INHQVRTLELVRRlvdDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
904-1098 |
6.40e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 74.53 E-value: 6.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 904 EPGVYIENLVKVYRHGKKlAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSelsAIRQSL 983
Cdd:PRK15056 4 QAGIVVNDVTVTWRNGHT-ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 984 -GVCPQ-HNVLFSMLTVEEHIWFYGRLKGL-----SEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVG 1056
Cdd:PRK15056 80 vAYVPQsEEVDWSFPVLVEDVVMMGRYGHMgwlrrAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2048025527 1057 GSKVVILDEPTAGVDPYARRGIWDLLLKYR-QGRTIILSTHHM 1098
Cdd:PRK15056 160 QGQVILLDEPFTGVDVKTEARIISLLRELRdEGKTMLVSTHNL 202
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
933-1116 |
7.99e-14 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 73.51 E-value: 7.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 933 EGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK--DIRSELSA-----IRQSLGVCPQHNVLFSMLTVEEH-IWF 1004
Cdd:COG4161 27 SGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKPSEkairlLRQKVGMVFQQYNLWPHLTVMENlIEA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1005 YGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK 1084
Cdd:COG4161 107 PCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQVVEIIRE 186
|
170 180 190
....*....|....*....|....*....|...
gi 2048025527 1085 YRQ-GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:COG4161 187 LSQtGITQVIVTHEVEFARKVASQVVYMEKGRI 219
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
926-1138 |
9.23e-14 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 77.07 E-value: 9.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 926 GLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFSMlTVEEHIwF 1004
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyDHHYLHRQVALVGQEPVLFSG-SVRENI-A 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1005 YGrLKGLSEQQVKGEIEQILQD---TGLPHKRSS----RTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRG 1077
Cdd:TIGR00958 577 YG-LTDTPDEEIMAAAKAANAHdfiMEFPNGYDTevgeKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1078 IWDllLKYRQGRTIILSTHHMDEADiLGDRIAIISHGKLCCVGSSLYLKNQlgTGYYLTLV 1138
Cdd:TIGR00958 656 LQE--SRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMED--QGCYKHLV 711
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1942-2166 |
9.40e-14 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 75.37 E-value: 9.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL------REIDEV 2015
Cdd:PRK09452 14 LVELRGISKSFD--GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIThvpaenRHVNTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQNMGYCPQfdsinelLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPP 2095
Cdd:PRK09452 92 FQSYALFPH-------MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2096 VVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL----KNRF 2166
Cdd:PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIyeepKNLF 240
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1941-2168 |
1.07e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 74.00 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1941 DILELRQLTKVFKRKQ-KPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGK--------SILRE 2011
Cdd:PRK13650 3 NIIEVKNLTFKYKEDQeKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDllteenvwDIRHK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2012 IDEVHQNmgycP--QFDSI---NELLTGREHlelyavlRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLST 2086
Cdd:PRK13650 83 IGMVFQN----PdnQFVGAtveDDVAFGLEN-------KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2087 AMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECeALCTRMAIMVNGRFRCLGSVQHLKNR 2165
Cdd:PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSR 230
|
...
gi 2048025527 2166 FGD 2168
Cdd:PRK13650 231 GND 233
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1943-2160 |
1.21e-13 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 73.27 E-value: 1.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR-EIDEVHQNMGY 2021
Cdd:PRK13548 3 LEARNLS--VRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADwSPAELARRRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2022 CPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALI------GAPP 2095
Cdd:PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepdGPPR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2096 VVFLDEPTTGMDPK--------ARRAlwncihsVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQ 2160
Cdd:PRK13548 161 WLLLDEPTSALDLAhqhhvlrlARQL-------AHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPA 226
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1958-2157 |
1.55e-13 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 75.26 E-value: 1.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1958 PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI-LREIDEVHQNMGYCPQFDSINELLTGRE 2036
Cdd:PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVeALSARAASRRVASVPQDTSLSFEFDVRQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2037 HLELYA---VLRGIPEKEVCDVA-EWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMD-PKAR 2111
Cdd:PRK09536 97 VVEMGRtphRSRFDTWTETDRAAvERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDiNHQV 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2048025527 2112 RALwNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLG 2157
Cdd:PRK09536 177 RTL-ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1957-2172 |
1.59e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 72.77 E-value: 1.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1957 KPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLT------GDTLVTSGEAFLAGKSILReIDEVHQNMGYCPQFDSINE 2030
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNrlieiyDSKIKVDGKVLYFGKDIFQ-IDAIKLRKEVGMVFQQPNP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2031 LltgrEHLELYAVL------RGIPEK-EVCDVAEWGIRKLGLVKYA----DKAAGSYSGGNMRKLSTAMALIGAPPVVFL 2099
Cdd:PRK14246 102 F----PHLSIYDNIayplksHGIKEKrEIKKIVEECLRKVGLWKEVydrlNSPASQLSGGQQQRLTIARALALKPKVLLM 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2100 DEPTTGMDPKARRALWNCIHSVIKEgRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL----KNRFGDGYTI 2172
Cdd:PRK14246 178 DEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIftspKNELTEKYVI 253
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
923-1116 |
2.00e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 75.33 E-value: 2.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK-----DIRSELSA----IRQSLGVCPQhnvlf 993
Cdd:PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQemrfaSTTAALAAgvaiIYQELHLVPE----- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 smLTVEEHIWFyGRLKG----LSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAG 1069
Cdd:PRK11288 94 --MTVAENLYL-GQLPHkggiVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSS 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1070 VDpyAR------RGIWDLllkYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK11288 171 LS--AReieqlfRVIREL---RAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1943-2148 |
2.10e-13 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 72.59 E-value: 2.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVF--KRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL-----REIdeV 2015
Cdd:COG4525 4 LTVRHVSVRYpgGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTgpgadRGV--V 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQNMGYCPqfdsineLLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPP 2095
Cdd:COG4525 82 FQKDALLP-------WLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPR 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2096 VVFLDEPTTGMDPKARRA-------LWNcihsviKEGRSVVLTSHSMEECEALCTRMAIM 2148
Cdd:COG4525 155 FLLMDEPFGALDALTREQmqellldVWQ------RTGKGVFLITHSVEEALFLATRLVVM 208
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
918-1121 |
2.25e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 72.71 E-value: 2.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 918 HGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSA-IRQSLGVCPQHNVLFSML 996
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKeVARRIGLLAQNATTPGDI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 997 TVEE--------HIWFYGRLKGLSEQQVKGEieqiLQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:PRK10253 97 TVQElvargrypHQPLFTRWRKEDEEAVTKA----MQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1069 GVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK10253 173 WLDISHQIDLLELLseLNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGA 227
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1970-2152 |
2.83e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 74.95 E-value: 2.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1970 GECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGK--SILREIDEVHQNMGYCPQ---FDSINELLTGRE-------- 2036
Cdd:PRK11288 279 GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKpiDIRSPRDAIRAGIMLCPEdrkAEGIIPVHSVADninisarr 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2037 -HLELYAVLRGIPEKEVcdvAEWGIRKLGlVK--YADKAAGSYSGGNMRK------LSTAMAligappVVFLDEPTTGMD 2107
Cdd:PRK11288 359 hHLRAGCLINNRWEAEN---ADRFIRSLN-IKtpSREQLIMNLSGGNQQKailgrwLSEDMK------VILLDEPTRGID 428
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2048025527 2108 PKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK11288 429 VGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1967-2151 |
3.48e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 72.22 E-value: 3.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIdevHQNM-GYCPQFDSIN---------ELLTGRE 2036
Cdd:PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAL---QKNLvAYVPQSEEVDwsfpvlvedVVMMGRY 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2037 -HLELyavLRgIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALW 2115
Cdd:PRK15056 107 gHMGW---LR-RAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARII 182
|
170 180 190
....*....|....*....|....*....|....*.
gi 2048025527 2116 NCIHSVIKEGRSVVLTSHSMEECEALCTrMAIMVNG 2151
Cdd:PRK15056 183 SLLRELRDEGKTMLVSTHNLGSVTEFCD-YTVMVKG 217
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1944-2159 |
4.16e-13 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 72.91 E-value: 4.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1944 ELRQLTKVF--KRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL----REIDEVHQ 2017
Cdd:PRK11153 3 ELKNISKVFpqGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTalseKELRKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2018 NMGYCpqFDSINeLLTGR---EHLELYAVLRGIPEKEvcdvaewgIRK-----LGLVKYADKaAGSY----SGGNMRKLS 2085
Cdd:PRK11153 83 QIGMI--FQHFN-LLSSRtvfDNVALPLELAGTPKAE--------IKArvtelLELVGLSDK-ADRYpaqlSGGQKQRVA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2086 TAMALIGAPPVVFLDEPTTGMDPKARRAlwncIHSVIKE-----GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSV 2159
Cdd:PRK11153 151 IARALASNPKVLLCDEATSALDPATTRS----ILELLKDinrelGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTV 225
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
921-1116 |
4.25e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 72.05 E-value: 4.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 921 KLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY-----ILGKDIRS--ELSAIRQSLGVCPQHNVLF 993
Cdd:PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYsgdvlLGGRSIFNyrDVLEFRRRVGMLFQRPNPF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 SMLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTS----ALSGGMQRKLSVALAFVGGSKVVILDEPTAG 1069
Cdd:PRK14271 114 PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSdspfRLSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2048025527 1070 VDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK14271 194 LDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1943-2152 |
4.87e-13 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 71.32 E-value: 4.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLT------------GDTLVTSGEAFLAGKSILR 2010
Cdd:PRK11264 4 IEVKNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINlleqpeagtirvGDITIDTARSLSQQKGLIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2011 EIdevHQNMGYCpqFDSINeLLTGREHLELY----AVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLST 2086
Cdd:PRK11264 82 QL---RQHVGFV--FQNFN-LFPHRTVLENIiegpVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2087 AMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGR 221
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1944-2203 |
5.01e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 71.56 E-value: 5.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1944 ELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILRE-IDEVHQNMGYC 2022
Cdd:PRK13632 9 KVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEnLKEIRKKIGII 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 ---P--QFDSI---NELLTGREHlelyavlRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAP 2094
Cdd:PRK13632 89 fqnPdnQFIGAtveDDIAFGLEN-------KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2095 PVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLT-SHSMEECeALCTRMAIMVNGRFRCLGSVQH-LKNRfgdgytI 2172
Cdd:PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISiTHDMDEA-ILADKVIVFSEGKLIAQGKPKEiLNNK------E 234
|
250 260 270
....*....|....*....|....*....|...
gi 2048025527 2173 ILRVAGPDpdlSPVMKFIESELSG--STLKEKH 2203
Cdd:PRK13632 235 ILEKAKID---SPFIYKLSKKLKGidPTYNEEE 264
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
936-1121 |
5.15e-13 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 72.84 E-value: 5.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 936 ITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-----ELSAIRQSLGVCPQHNVLFSMLTVEEHIwFYGRLKG 1010
Cdd:TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDsrkgiFLPPEKRRIGYVFQEARLFPHLSVRGNL-RYGMKRA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1011 LSEQQVKGEiEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ--G 1088
Cdd:TIGR02142 104 RPSERRISF-ERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAefG 182
|
170 180 190
....*....|....*....|....*....|...
gi 2048025527 1089 RTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:TIGR02142 183 IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1967-2153 |
6.31e-13 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 73.93 E-value: 6.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI--LREIDEVHQNMGYCPQ--------FDS-----INEL 2031
Cdd:PRK15439 286 VRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEInaLSTAQRLARGLVYLPEdrqssglyLDAplawnVCAL 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2032 LTGREHLELYavlrgiPEKEVCdVAEWGIRKLGL-VKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKA 2110
Cdd:PRK15439 366 THNRRGFWIK------PARENA-VLERYRRALNIkFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2048025527 2111 RRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:PRK15439 439 RNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1938-2150 |
6.74e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 71.32 E-value: 6.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1938 GHGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI----LREID 2013
Cdd:PRK13648 3 DKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAItddnFEKLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2014 E----VHQN-----MGYCPQFDsineLLTGrehLELYAVlrgiPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKL 2084
Cdd:PRK13648 83 KhigiVFQNpdnqfVGSIVKYD----VAFG---LENHAV----PYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2085 STAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSViKEGRSVVLTSHSMEECEALCTRMAIMVN 2150
Cdd:PRK13648 152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKV-KSEHNITIISITHDLSEAMEADHVIVMN 216
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
1969-2152 |
6.85e-13 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 70.02 E-value: 6.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1969 PGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAG-------KSIL-----REIDEVHQNMGYCPQfdsinelLTGRE 2036
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdsrKKINlppqqRKIGLVFQQYALFPH-------LNVRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2037 HLELyaVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWN 2116
Cdd:cd03297 95 NLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172
|
170 180 190
....*....|....*....|....*....|....*..
gi 2048025527 2117 CIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03297 173 ELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGR 209
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
909-1116 |
7.10e-13 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 74.01 E-value: 7.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCP 987
Cdd:COG4618 333 VENLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwDREELGRHIGYLP 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVLFSMlTVEEHIwfyGRLKGLSEQQVK------GEIEQILQ-----DTGLphkrSSRTSALSGG-MQRklsVALA-- 1053
Cdd:COG4618 413 QDVELFDG-TIAENI---ARFGDADPEKVVaaaklaGVHEMILRlpdgyDTRI----GEGGARLSGGqRQR---IGLAra 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 1054 FVGGSKVVILDEPTAGVDPYARRGIWDLL--LKyRQGRTIILSTHHMdeaDILG--DRIAIISHGKL 1116
Cdd:COG4618 482 LYGDPRLVVLDEPNSNLDDEGEAALAAAIraLK-ARGATVVVITHRP---SLLAavDKLLVLRDGRV 544
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
1943-2152 |
7.97e-13 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 69.87 E-value: 7.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL---REIDEVHQNM 2019
Cdd:cd03262 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTddkKNINELRQKV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCpqFDSIN--ELLTGREHLELYAV-LRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPV 2096
Cdd:cd03262 79 GMV--FQQFNlfPHLTVLENITLAPIkVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2097 VFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1958-2158 |
9.18e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 71.17 E-value: 9.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1958 PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGK-----SILREIDE----VHQNmgycPQFDSI 2028
Cdd:PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIdtgdfSKLQGIRKlvgiVFQN----PETQFV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2029 -----NELLTGREHLELyavlrgiPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPT 2103
Cdd:PRK13644 92 grtveEDLAFGPENLCL-------PPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2104 TGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEAlCTRMAIMVNGRFRCLGS 2158
Cdd:PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGE 218
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
909-1121 |
1.01e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 69.09 E-value: 1.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLvKVYRHGKKLaVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGlFP---PTSGTAYILGKDIrSELSA---IRQS 982
Cdd:cd03217 3 IKDL-HVSVGGKEI-LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPkyeVTEGEILFKGEDI-TDLPPeerARLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQHNVLFSMLTVEEHiwfygrLKGLSEqqvkgeieqilqdtglphkrssrtsALSGGMQRKLSVALAFVGGSKVVI 1062
Cdd:cd03217 79 IFLAFQYPPEIPGVKNADF------LRYVNE-------------------------GFSGGEKKRNEILQLLLLEPDLAI 127
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1063 LDEPTAGVDPYARRGIWDLLLKYR-QGRTIILSTHHMDEAD-ILGDRIAIISHGKLCCVGS 1121
Cdd:cd03217 128 LDEPDSGLDIDALRLVAEVINKLReEGKSVLIITHYQRLLDyIKPDRVHVLYDGRIVKSGD 188
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
933-1114 |
1.09e-12 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 70.04 E-value: 1.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 933 EGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILG-----------KDIRselsAIRQSLGVCPQHNVLFSMLTVEEH 1001
Cdd:PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhfdfsktpsdKAIR----ELRRNVGMVFQQYNLWPHLTVQQN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1002 -IWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWD 1080
Cdd:PRK11124 103 lIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2048025527 1081 LLLKYRQ-GRTIILSTHHMDEADILGDRIA------IISHG 1114
Cdd:PRK11124 183 IIRELAEtGITQVIVTHEVEVARKTASRVVymenghIVEQG 223
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
917-1116 |
1.11e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 73.04 E-value: 1.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 917 RHGKKlaVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFP-PTSGTAYILGK--DIRSELSAIRQSLGVCP----QH 989
Cdd:PRK13549 273 PHIKR--VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKpvKIRNPQQAIAQGIAMVPedrkRD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 990 NVLFSM-------LTVEEHIWFYGRLKGLSEQQVkgeIEQILQDtgLPHKRSS---RTSALSGGMQRKLSVALAFVGGSK 1059
Cdd:PRK13549 351 GIVPVMgvgknitLAALDRFTGGSRIDDAAELKT---ILESIQR--LKVKTASpelAIARLSGGNQQKAVLAKCLLLNPK 425
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1060 VVILDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEadILG--DRIAIISHGKL 1116
Cdd:PRK13549 426 ILILDEPTRGIDVGAKYEIYKLINQLvQQGVAIIVISSELPE--VLGlsDRVLVMHEGKL 483
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1942-2152 |
1.14e-12 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 71.65 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQKP--AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL----REIDEV 2015
Cdd:COG1135 1 MIELENLSKTFPTKGGPvtALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTalseRELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQNMGYCPQ-FdsiNeLLTGR---EHLELYAVLRGIPEKEvcdvaewgIRK-----LGLVKYADKaAGSY----SGGNMR 2082
Cdd:COG1135 81 RRKIGMIFQhF---N-LLSSRtvaENVALPLEIAGVPKAE--------IRKrvaelLELVGLSDK-ADAYpsqlSGGQKQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2083 KLSTAMALIGAPPVVFLDEPTTGMDPKARRAlwncIHSVIKE-----GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG1135 148 RVGIARALANNPKVLLCDEATSALDPETTRS----ILDLLKDinrelGLTIVLITHEMDVVRRICDRVAVLENGR 218
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
923-1115 |
1.21e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 73.04 E-value: 1.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFP--PTSGTAYILGKDIR------SE---LSAIRQSLGVCPQhnv 991
Cdd:PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPhgTYEGEIIFEGEELQasnirdTEragIAIIHQELALVKE--- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 992 lfsmLTVEEHIwFYGR--LKG--LSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPT 1067
Cdd:PRK13549 97 ----LSVLENI-FLGNeiTPGgiMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPT 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1068 AGVDPYARRGIWDLL--LKyRQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:PRK13549 172 ASLTESETAVLLDIIrdLK-AHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
924-1116 |
1.23e-12 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 70.11 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 924 VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPP----TSGTAYILGK-----DIRSELSA-IRQSlgvcPQH--NV 991
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKpvapcALRGRKIAtIMQN----PRSafNP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 992 LFSMLTveehiwfYGR--LKGLSEQQVKGEIEQILQDTGLPH-KRSSRTSA--LSGGMQRKLSVALAFVGGSKVVILDEP 1066
Cdd:PRK10418 95 LHTMHT-------HARetCLALGKPADDATLTAALEAVGLENaARVLKLYPfeMSGGMLQRMMIALALLCEAPFIIADEP 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1067 TAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK10418 168 TTDLDVVAQARILDLLesIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1904-2152 |
1.35e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 72.73 E-value: 1.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1904 FIKARSVSKLtklgalgeeDED------VAR--ERQ--RIvhGLGHGDI-LELRQLTKvfkrkqkPAVDRLCVGIPPGEC 1972
Cdd:PRK10762 219 FIAEREVADL---------TEDsliemmVGRklEDQypRL--DKAPGEVrLKVDNLSG-------PGVNDVSFTLRKGEI 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1973 FGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL------------------REID------EVHQNMGYC--PQFD 2026
Cdd:PRK10762 281 LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVtrspqdglangivyisedRKRDglvlgmSVKENMSLTalRYFS 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2027 SINELLTGREhlELYAVLRGIpekevcdvaewgirKLGLVKY--ADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTT 2104
Cdd:PRK10762 361 RAGGSLKHAD--EQQAVSDFI--------------RLFNIKTpsMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2048025527 2105 GMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK10762 425 GVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1942-2153 |
1.51e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 72.73 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFkrkqkPAVDRL---CVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL----REIDE 2014
Cdd:PRK10762 4 LLQLKGIDKAF-----PGVKALsgaALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfngpKSSQE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 -----VHQNMGYCPQFdSINE-LLTGREHLELYAvlrGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAM 2088
Cdd:PRK10762 79 agigiIHQELNLIPQL-TIAEnIFLGREFVNRFG---RIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAK 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2089 ALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1942-2152 |
1.61e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 72.55 E-value: 1.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG--DTLVTSGEAFLAGKSI----LREIDE- 2014
Cdd:TIGR02633 1 LLEMKGIVKTFGGVK--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGvyPHGTWDGEIYWSGSPLkasnIRDTERa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 ----VHQNMGYCPQFDSINELLTGREhLELYAVLRGIPekEVCDVAEWGIRKLGLVKYAD-KAAGSYSGGNMRKLSTAMA 2089
Cdd:TIGR02633 79 giviIHQELTLVPELSVAENIFLGNE-ITLPGGRMAYN--AMYLRAKNLLRELQLDADNVtRPVGDYGGGQQQLVEIAKA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2090 LIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:TIGR02633 156 LNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
1943-2157 |
1.88e-12 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 72.47 E-value: 1.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR-EIDEVHQNMGY 2021
Cdd:COG4618 331 LSVENLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwDREELGRHIGY 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2022 CPQfdSInELLTG--REHLelyAVLRGI-PEKEV-----CDVAEWgIRKL--------GlvkyadkAAGSY-SGGNMRKL 2084
Cdd:COG4618 411 LPQ--DV-ELFDGtiAENI---ARFGDAdPEKVVaaaklAGVHEM-ILRLpdgydtriG-------EGGARlSGGQRQRI 476
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2085 STAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMeecEAL--CTRMAIMVNGRFRCLG 2157
Cdd:COG4618 477 GLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRP---SLLaaVDKLLVLRDGRVQAFG 548
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
909-1115 |
1.93e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 72.16 E-value: 1.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFP--PTSGTAYILGKDIRSelSAIRQS---- 982
Cdd:TIGR02633 4 MKGIVKTF--GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhgTWDGEIYWSGSPLKA--SNIRDTerag 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCPQHNVLFSMLTVEEHIwFYGR---LKG--LSEQQVKGEIEQILQDTGLPHKRSSR-TSALSGGMQRKLSVALAFVG 1056
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENI-FLGNeitLPGgrMAYNAMYLRAKNLLRELQLDADNVTRpVGDYGGGQQQLVEIAKALNK 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1057 GSKVVILDEPTAGVDPYARRGIWDLL--LKyRQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIrdLK-AHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1941-2133 |
2.03e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 68.44 E-value: 2.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1941 DILELRqltkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVHQNMG 2020
Cdd:PRK13540 3 DVIELD-----FDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQFDSINELLTGREH--LELYAVLRGIPEKEVCdvaewgiRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVF 2098
Cdd:PRK13540 78 FVGHRSGINPYLTLRENclYDIHFSPGAVGITELC-------RLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL 150
|
170 180 190
....*....|....*....|....*....|....*
gi 2048025527 2099 LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSH 2133
Cdd:PRK13540 151 LDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
898-1116 |
2.12e-12 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 69.71 E-value: 2.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 898 EEPAHLEPG--VYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGtAYILGkdiRSE 975
Cdd:PRK11247 2 MNTARLNQGtpLLLNAVSKRY--GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-ELLAG---TAP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 976 LSAIRQSLGVCPQHNVLFSMLTVEEHIWFygRLKGlseqQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFV 1055
Cdd:PRK11247 76 LAEAREDTRLMFQDARLLPWKKVIDNVGL--GLKG----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALI 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIesLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
1967-2152 |
2.22e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 69.77 E-value: 2.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL-----REIDEVHQNMGYCPQFDsinelltgREHLELY 2041
Cdd:PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknKDIKQIRKKVGLVFQFP--------ESQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2042 AVLR---------GIPEKEVCDVAEwgiRKLGLVKYA----DKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDP 2108
Cdd:PRK13649 102 TVLKdvafgpqnfGVSQEEAEALAR---EKLALVGISeslfEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2048025527 2109 KARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK13649 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGK 222
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
909-1116 |
2.88e-12 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 69.33 E-value: 2.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLA-------VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELS 977
Cdd:PRK10419 6 VSGLSHHYAHGGLSGkhqhqtvLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLaklnRAQRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIRQ--------SLG-VCPQHNVLFSMLTVEEHiwfygrLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSA-LSGGMQRK 1047
Cdd:PRK10419 86 AFRRdiqmvfqdSISaVNPRKTVREIIREPLRH------LLSLDKAERLARASEMLRAVDLDDSVLDKRPPqLSGGQLQR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1048 LSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQqfGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1934-2152 |
3.26e-12 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 69.06 E-value: 3.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1934 VHGLGHgdilELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAG-------- 2005
Cdd:TIGR02769 5 VRDVTH----TYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGqdlyqldr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2006 ---KSILREIDEVHQNmgyCPqfDSINELLTGR----EHLELYAVLRGIPEKEvcDVAEWgIRKLGL-VKYADKAAGSYS 2077
Cdd:TIGR02769 81 kqrRAFRRDVQLVFQD---SP--SAVNPRMTVRqiigEPLRHLTSLDESEQKA--RIAEL-LDMVGLrSEDADKLPRQLS 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2078 GGNMRKLSTAMALIGAPPVVFLDEPTTGMDpkarRALWNCIHSVIKE-----GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLD----MVLQAVILELLRKlqqafGTAYLFITHDLRLVQSFCQRVAVMDKGQ 228
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
916-1114 |
4.35e-12 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 67.82 E-value: 4.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELS--AIRQSLGVCPQHNVLF 993
Cdd:PRK10247 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI-STLKpeIYRQQVSYCAQTPTLF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 SMlTVEEHIWFYGRLKGLSEQQVKgeIEQILQDTGLP-HKRSSRTSALSGGMQRKLSVA--LAFVggSKVVILDEPTAGV 1070
Cdd:PRK10247 94 GD-TVYDNLIFPWQIRNQQPDPAI--FLDDLERFALPdTILTKNIAELSGGEKQRISLIrnLQFM--PKVLLLDEITSAL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2048025527 1071 DPYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHG 1114
Cdd:PRK10247 169 DESNKHNVNEIIHRYvrEQNIAVLWVTHDKDEINHADKVITLQPHA 214
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1919-2152 |
4.37e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.97 E-value: 4.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1919 LGEEDEDVARERQRIVHGLGHGDILELRQLTkvfkRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTS 1998
Cdd:PRK09700 242 VGRELQNRFNAMKENVSNLAHETVFEVRNVT----SRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1999 GEAFLAGKSIL--REIDEVHQNMGYC----------PQFdSINELLTGREHLELyAVLRG----IPEKEVCDVAEwGIRK 2062
Cdd:PRK09700 318 GEIRLNGKDISprSPLDAVKKGMAYItesrrdngffPNF-SIAQNMAISRSLKD-GGYKGamglFHEVDEQRTAE-NQRE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2063 LGLVKYA--DKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEA 2140
Cdd:PRK09700 395 LLALKCHsvNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIIT 474
|
250
....*....|..
gi 2048025527 2141 LCTRMAIMVNGR 2152
Cdd:PRK09700 475 VCDRIAVFCEGR 486
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
1956-2151 |
6.82e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 68.65 E-value: 6.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1956 QKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL-----REIDEVHQNMGYCPQF----- 2025
Cdd:PRK13646 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIThktkdKYIRPVRKRIGMVFQFpesql 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2026 --DSIN-ELLTGREHLelyavlrGIPEKEVCDVAEWGIRKLGLVK-YADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDE 2101
Cdd:PRK13646 99 feDTVErEIIFGPKNF-------KMNLDEVKNYAHRLLMDLGFSRdVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2102 PTTGMDPKARRALWNCIHSV-IKEGRSVVLTSHSMEECEALCTRMAIMVNG 2151
Cdd:PRK13646 172 PTAGLDPQSKRQVMRLLKSLqTDENKTIILVSHDMNEVARYADEVIVMKEG 222
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
1943-2136 |
7.16e-12 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 70.39 E-value: 7.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFkRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSiLREIDE--VHQNMG 2020
Cdd:TIGR02857 322 LEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVP-LADADAdsWRDQIA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQFDSINElLTGREHLELYAvlRGIPEKEVCDVAE----WGI---RKLGLVKYADKAAGSYSGGNMRKLSTAMALIGA 2093
Cdd:TIGR02857 400 WVPQHPFLFA-GTIAENIRLAR--PDASDAEIREALEraglDEFvaaLPQGLDTPIGEGGAGLSGGQAQRLALARAFLRD 476
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2094 PPVVFLDEPTTGMDP-------KARRALwncihsviKEGRSVVLTSHSME 2136
Cdd:TIGR02857 477 APLLLLDEPTAHLDAeteaevlEALRAL--------AQGRTVLLVTHRLA 518
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
1957-2162 |
7.42e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 68.20 E-value: 7.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1957 KPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLT--GDTLVT---SGEAFLAGKSIL--REIDEVHQNMGYCPQ----- 2024
Cdd:PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNrmNDKVSGyrySGDVLLGGRSIFnyRDVLEFRRRVGMLFQrpnpf 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2025 -FDSINELLTG-REHlelyavlRGIPEKEVCDVAEWGIRKLGLVK-YADKAAGS---YSGGNMRKLSTAMALIGAPPVVF 2098
Cdd:PRK14271 114 pMSIMDNVLAGvRAH-------KLVPRKEFRGVAQARLTEVGLWDaVKDRLSDSpfrLSGGQQQLLCLARTLAVNPEVLL 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2099 LDEPTTGMDPKARRALWNCIHSvIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL 2162
Cdd:PRK14271 187 LDEPTSALDPTTTEKIEEFIRS-LADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
1967-2181 |
7.87e-12 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 69.37 E-value: 7.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGK----SILREIDEVHQN-MGYCPQFDSINELLTGREHLElY 2041
Cdd:TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRtlfdSRKGIFLPPEKRrIGYVFQEARLFPHLSVRGNLR-Y 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2042 AVLRGIPEKEVCDVAEWgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSV 2121
Cdd:TIGR02142 99 GMKRARPSERRISFERV-IELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERL 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2122 IKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNR-------FGD-GYTIILRVAGPDP 2181
Cdd:TIGR02142 178 HAEfGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASpdlpwlaREDqGSLIEGVVAEHDQ 246
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
909-1115 |
8.12e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 64.78 E-value: 8.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTaYILGKDIRselsairqsLGVCPQ 988
Cdd:cd03221 3 LENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTVK---------IGYFEQ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 hnvlfsmltveehiwfygrlkglseqqvkgeieqilqdtglphkrssrtsaLSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:cd03221 71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2048025527 1069 GVDPYARRGIWDLLLKYRqgRTIILSTHhmDEA--DILGDRIAIISHGK 1115
Cdd:cd03221 100 HLDLESIEALEEALKEYP--GTVILVSH--DRYflDQVATKIIELEDGK 144
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1943-2134 |
8.45e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 66.82 E-value: 8.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVfkRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlrEIDEVHQNMGYC 2022
Cdd:PRK13539 3 LEGEDLACV--RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--DDPDVAEACHYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEwgirKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALE----AVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154
|
170 180 190
....*....|....*....|....*....|..
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKEGRSVVLTSHS 2134
Cdd:PRK13539 155 TAALDAAAVALFAELIRAHLAQGGIVIAATHI 186
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
1965-2162 |
8.54e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 68.51 E-value: 8.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1965 VGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVH-----QNMGYCPQFDsinelltgrEHlE 2039
Cdd:PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKlkplrKKVGIVFQFP---------EH-Q 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2040 LY--AVLR---------GIPEKEVCDVAEWGIRKLGLV-KYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMD 2107
Cdd:PRK13634 98 LFeeTVEKdicfgpmnfGVSEEDAKQKAREMIELVGLPeELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2108 PKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL 2162
Cdd:PRK13634 178 PKGRKEMMEMFYKLHKEkGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
1943-2162 |
1.48e-11 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 69.47 E-value: 1.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlREIDE--VHQNMG 2020
Cdd:PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPI-ADYSEaaLRQAIS 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQfdsinelltgREHLeLYAVLR-----GIPEK---EVCDVaewgIRKLGLVKYADKAAG----------SYSGGNMR 2082
Cdd:PRK11160 418 VVSQ----------RVHL-FSATLRdnlllAAPNAsdeALIEV----LQQVGLEKLLEDDKGlnawlgeggrQLSGGEQR 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2083 KLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKeGRSVVLTSH---SMEECEALCtrmaIMVNGRFRCLGSV 2159
Cdd:PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHrltGLEQFDRIC----VMDNGQIIEQGTH 557
|
...
gi 2048025527 2160 QHL 2162
Cdd:PRK11160 558 QEL 560
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
1947-2152 |
1.82e-11 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 65.98 E-value: 1.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1947 QLTKVFKRKQKPAVDrLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL------REIDEVHQNMG 2020
Cdd:cd03298 2 RLDKIRFSYGEQPMH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTaappadRPVSMLFQENN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQFDSINELLTGRE-HLELYAVLRGIPEKevcdvaewGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFL 2099
Cdd:cd03298 81 LFAHLTVEQNVGLGLSpGLKLTAEDRQAIEV--------ALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2100 DEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:cd03298 153 DEPFAALDPALRAEMLDLVLDLHAEtKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1959-2139 |
1.88e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 69.77 E-value: 1.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1959 AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL--REIDEVHQNMGYCPQfdsinEL----- 2031
Cdd:NF033858 16 ALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMAdaRHRRAVCPRIAYMPQ-----GLgknly 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2032 --LTGREHLELYAVLRGIPEKEvcdvAEWGIRKL----GLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTG 2105
Cdd:NF033858 91 ptLSVFENLDFFGRLFGQDAAE----RRRRIDELlratGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTG 166
|
170 180 190
....*....|....*....|....*....|....*..
gi 2048025527 2106 MDPKARRALWNCIHSvIKEGR---SVVLTSHSMEECE 2139
Cdd:NF033858 167 VDPLSRRQFWELIDR-IRAERpgmSVLVATAYMEEAE 202
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
923-1115 |
2.03e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 68.99 E-value: 2.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI--RSELSAIRQSLGVCPQHNVLFSMLTVEE 1000
Cdd:PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfKSSKEALENGISMVHQELNLVLQRSVMD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1001 HIWFyGR--LKGLSEQQVK--GEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARR 1076
Cdd:PRK10982 93 NMWL-GRypTKGMFVDQDKmyRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2048025527 1077 GIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:PRK10982 172 HLFTIIRKLKeRGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
909-1115 |
2.07e-11 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 66.49 E-value: 2.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTA-YILGKDIRSELSAI-------- 979
Cdd:PRK11701 9 VRGLTKLY--GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhYRMRDGQLRDLYALseaerrrl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 980 -RQSLGVCPQH-------------NV---LfsMLTVEEHiwfYGRLKGlseqqvkgEIEQILQDTGLPHKR-SSRTSALS 1041
Cdd:PRK11701 87 lRTEWGFVHQHprdglrmqvsaggNIgerL--MAVGARH---YGDIRA--------TAGDWLERVEIDAARiDDLPTTFS 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1042 GGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLrgLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
909-1115 |
2.32e-11 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 68.98 E-value: 2.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDgLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIrSELS--AIRQSLGVC 986
Cdd:PRK10790 343 IDNVSFAYRDDNLVLQN-INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL-SSLShsVLRQGVAMV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 987 PQHNV-----LFSMLTVEEHIwfygrlkglSEQQVKGEIEQI-LQD--TGLP---HKR-SSRTSALSGGMQRKLSVALAF 1054
Cdd:PRK10790 421 QQDPVvladtFLANVTLGRDI---------SEEQVWQALETVqLAElaRSLPdglYTPlGEQGNNLSVGQKQLLALARVL 491
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 1055 VGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMD---EAdilgDRIAIISHGK 1115
Cdd:PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLStivEA----DTILVLHRGQ 551
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
934-1097 |
2.47e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 65.36 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFygrlkGLSE 1013
Cdd:PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLY-----DIHF 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1014 QQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR-QGRTII 1092
Cdd:PRK13540 102 SPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRaKGGAVL 181
|
....*
gi 2048025527 1093 LSTHH 1097
Cdd:PRK13540 182 LTSHQ 186
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
934-1116 |
2.51e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 68.78 E-value: 2.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK--DIRSELSAIRQSLGVCPQ---HNVLFSMLTVEEHIWFYGRL 1008
Cdd:PRK11288 279 GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKpiDIRSPRDAIRAGIMLCPEdrkAEGIIPVHSVADNINISARR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1009 KG------LSEQQVKGEIEQILQDtgLPHKRSSRTSA---LSGGMQRK--LSVALAfvGGSKVVILDEPTAGVDPYARRG 1077
Cdd:PRK11288 359 HHlragclINNRWEAENADRFIRS--LNIKTPSREQLimnLSGGNQQKaiLGRWLS--EDMKVILLDEPTRGIDVGAKHE 434
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2048025527 1078 IWDLLLKY-RQGRTIILSTHhmDEADILG--DRIAIISHGKL 1116
Cdd:PRK11288 435 IYNVIYELaAQGVAVLFVSS--DLPEVLGvaDRIVVMREGRI 474
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1952-2136 |
2.55e-11 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 66.57 E-value: 2.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1952 FKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI---LREIDEVHQNMGYCPQfDSI 2028
Cdd:PRK13638 9 FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLdysKRGLLALRQQVATVFQ-DPE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2029 NELLTGREHLELYAVLR--GIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGM 2106
Cdd:PRK13638 88 QQIFYTDIDSDIAFSLRnlGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGL 167
|
170 180 190
....*....|....*....|....*....|
gi 2048025527 2107 DPKARRALWNCIHSVIKEGRSVVLTSHSME 2136
Cdd:PRK13638 168 DPAGRTQMIAIIRRIVAQGNHVIISSHDID 197
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
934-1096 |
2.68e-11 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 64.96 E-value: 2.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSIL-----TGLfppTSGTAYILGKDIRSELsaiRQSLGVCPQHNVLFSMLTVEEHIWFYGRL 1008
Cdd:cd03232 33 GTLTALMGESGAGKTTLLDVLagrktAGV---ITGEILINGRPLDKNF---QRSTGYVEQQDVHSPNLTVREALRFSALL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1009 KGLSEQQvkgeieqilqdtglphkrssrtsalsggmQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY-RQ 1087
Cdd:cd03232 107 RGLSVEQ-----------------------------RKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLaDS 157
|
....*....
gi 2048025527 1088 GRTIILSTH 1096
Cdd:cd03232 158 GQAILCTIH 166
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
939-1117 |
3.21e-11 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 68.46 E-value: 3.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 939 FL-GHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQslgvcpqhnvLFSmlTVEEHIWFYGRLKGLSEQQV 1016
Cdd:PRK10522 353 FLiGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEqPEDYRK----------LFS--AVFTDFHLFDQLLGPEGKPA 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1017 KGEI-EQILQDTGLPHK------RSSRTSaLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQ-- 1087
Cdd:PRK10522 421 NPALvEKWLERLKMAHKleledgRISNLK-LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQem 499
|
170 180 190
....*....|....*....|....*....|
gi 2048025527 1088 GRTIILSTHHmDEADILGDRIAIISHGKLC 1117
Cdd:PRK10522 500 GKTIFAISHD-DHYFIHADRLLEMRNGQLS 528
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1941-2139 |
3.45e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 66.36 E-value: 3.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1941 DILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG--------DTLVTSGEAFLAGKSI--LR 2010
Cdd:PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlllpddnpNSKITVDGITLTAKTVwdIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2011 E-IDEVHQNmgycP--QFDSI---NELLTGREHlelyavlRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKL 2084
Cdd:PRK13640 84 EkVGIVFQN----PdnQFVGAtvgDDVAFGLEN-------RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRV 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2085 STAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECE 2139
Cdd:PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKnNLTVISITHDIDEAN 208
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1942-2152 |
4.53e-11 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 67.74 E-value: 4.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFkrkqkPAV---DRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGdtLV--TSGEAFLAGKSIlrEIDE-- 2014
Cdd:COG3845 5 ALELRGITKRF-----GGVvanDDVSLTVRPGEIHALLGENGAGKSTLMKILYG--LYqpDSGEILIDGKPV--RIRSpr 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 ---------VHQN-MgycpQFDSinelLT-------GREHLELYAVLRGIPEKEVCDVAEwgirKLGLVKYADKAAGSys 2077
Cdd:COG3845 76 daialgigmVHQHfM----LVPN----LTvaenivlGLEPTKGGRLDRKAARARIRELSE----RYGLDVDPDAKVED-- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2078 ggnmrkLSTAM--------ALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMV 2149
Cdd:COG3845 142 ------LSVGEqqrveilkALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLR 215
|
...
gi 2048025527 2150 NGR 2152
Cdd:COG3845 216 RGK 218
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
923-1115 |
4.61e-11 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 67.89 E-value: 4.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQS--LGVCPQHN--VLFSMLTV 998
Cdd:NF040905 16 ALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSYEGEILFDGEVCRFKDIRDSeaLGIVIIHQelALIPYLSI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 999 EEHIwFYGrlkglSEQQVKGEI---------EQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAG 1069
Cdd:NF040905 96 AENI-FLG-----NERAKRGVIdwnetnrraRELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKDVKLLILDEPTAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2048025527 1070 VDPYARRGIWDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:NF040905 170 LNEEDSAALLDLLLELKaQGITSIIISHKLNEIRRVADSITVLRDGR 216
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1967-2134 |
5.13e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 65.25 E-value: 5.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTT---TFKMLT--GDTLVTSGEAFLAGKSILRE-ID--EVHQNMGYCPQFDSINELLTGREHL 2038
Cdd:PRK14267 27 IPQNGVFALMGPSGCGKSTllrTFNRLLelNEEARVEGEVRLFGRNIYSPdVDpiEVRREVGMVFQYPNPFPHLTIYDNV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2039 ELYAVLRGI--PEKEVCDVAEWGIRKLGL---VK-YADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARR 2112
Cdd:PRK14267 107 AIGVKLNGLvkSKKELDERVEWALKKAALwdeVKdRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTA 186
|
170 180
....*....|....*....|..
gi 2048025527 2113 ALWNCIHSvIKEGRSVVLTSHS 2134
Cdd:PRK14267 187 KIEELLFE-LKKEYTIVLVTHS 207
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1947-2171 |
6.64e-11 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 65.11 E-value: 6.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1947 QLTKVFKRKQ-KPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL---REIDEVHQNMGYC 2022
Cdd:PRK11248 3 QISHLYADYGgKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEgpgAERGVVFQNEGLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2023 PQFDSINELLTGREhlelyavLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:PRK11248 83 PWRNVQDNVAFGLQ-------LAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2103 TTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRClgsVQHLKNRFGDGYT 2171
Cdd:PRK11248 156 FGALDAFTREQMQTLLLKLWQEtGKQVLLITHDIEEAVFMATELVLLSPGPGRV---VERLPLNFARRFV 222
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
900-1116 |
7.11e-11 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 63.97 E-value: 7.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 900 PAHLEpgVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSA 978
Cdd:cd03369 2 PEHGE--IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTiPLED 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 979 IRQSLGVCPQHNVLFSMlTVEEHIWFYGRlkgLSEQQVKGEIeqilqdtglphKRSSRTSALSGGMQRKLSVALAFVGGS 1058
Cdd:cd03369 80 LRSSLTIIPQDPTLFSG-TIRSNLDPFDE---YSDEEIYGAL-----------RVSEGGLNLSQGQRQLLCLARALLKRP 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDE-ADIlgDRIAIISHGKL 1116
Cdd:cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTiIDY--DKILVMDAGEV 201
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1943-2153 |
7.20e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 67.24 E-value: 7.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGK---------SILREID 2013
Cdd:PRK11288 5 LSFDGIGKTFPGVK--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQemrfasttaALAAGVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2014 EVHQNMGYCPQFDSINELLTGRehleLYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGA 2093
Cdd:PRK11288 83 IIYQELHLVPEMTVAENLYLGQ----LPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2094 PPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1942-2152 |
7.92e-11 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 64.52 E-value: 7.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKS--------ILREid 2013
Cdd:PRK11614 5 MLSFDKVSAHYGKIQ--ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDitdwqtakIMRE-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2014 evhqNMGYCPQFDSINELLTGREHLEL--YAVLRGIPEKEVCDVAEWGIRklgLVKYADKAAGSYSGGNMRKLSTAMALI 2091
Cdd:PRK11614 81 ----AVAIVPEGRRVFSRMTVEENLAMggFFAERDQFQERIKWVYELFPR---LHERRIQRAGTMSGGEQQMLAIGRALM 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2092 GAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGH 214
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
1954-2133 |
9.11e-11 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 64.17 E-value: 9.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1954 RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL-REIDEVHQNMGYCPQfDSIneLL 2032
Cdd:cd03254 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRdISRKSLRSMIGVVLQ-DTF--LF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2033 TG--REHLELYavlRGIPEKEVCDVA--EWG----IRKL--GLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:cd03254 90 SGtiMENIRLG---RPNATDEEVIEAakEAGahdfIMKLpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEA 166
|
170 180 190
....*....|....*....|....*....|.
gi 2048025527 2103 TTGMDPKARRALWNCIHSvIKEGRSVVLTSH 2133
Cdd:cd03254 167 TSNIDTETEKLIQEALEK-LMKGRTSIIIAH 196
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1907-2114 |
9.18e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 66.88 E-value: 9.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1907 ARSVSKLTKLGALGEEDEDVARERQRIVHGLGH--GD-ILELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGK 1983
Cdd:TIGR03719 284 AKSKARLARYEELLSQEFQKRNETAEIYIPPGPrlGDkVIEAENLTKAFG--DKLLIDDLSFKLPPGGIVGVIGPNGAGK 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1984 TTTFKMLTGDTLVTSGEaflagksiLREIDEVHqnMGYCPQFdsinelltgREHLElyavlrgiPEKEVCDVAEWG--IR 2061
Cdd:TIGR03719 362 STLFRMITGQEQPDSGT--------IEIGETVK--LAYVDQS---------RDALD--------PNKTVWEEISGGldII 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2062 KLGLV-------------KYAD--KAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRAL 2114
Cdd:TIGR03719 415 KLGKReipsrayvgrfnfKGSDqqKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL 482
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
922-1116 |
1.04e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 66.61 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 922 LAVDGLT-LGF-------YEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVC--P---Q 988
Cdd:PRK15439 269 LTVEDLTgEGFrnislevRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVylPedrQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLF---------SMLTVEEHIWFygrlkgLSEQQVKGEIEQILQDTG--LPHKRSS-RTsaLSGGMQRKLSVALAFVG 1056
Cdd:PRK15439 349 SSGLYldaplawnvCALTHNRRGFW------IKPARENAVLERYRRALNikFNHAEQAaRT--LSGGNQQKVLIAKCLEA 420
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1057 GSKVVILDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK15439 421 SPQLLIVDEPTRGVDVSARNDIYQLIRSIaAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
909-1116 |
1.11e-10 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 66.63 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKL--AVDGLTLGFYEGQITSFLGHNGAGKT-TTMSILtGLFPP----TSGTAYILGKDI----RSELS 977
Cdd:COG4172 9 VEDLSVAFGQGGGTveAVKGVSFDIAAGETLALVGESGSGKSvTALSIL-RLLPDpaahPSGSILFDGQDLlglsERELR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 978 AIR--------Q----SLgvcpqhNVLFsmlTVEEHIwfyG---RL-KGLSEQQVKGEIEQILQDTGLPHKRsSRTSA-- 1039
Cdd:COG4172 88 RIRgnriamifQepmtSL------NPLH---TIGKQI---AevlRLhRGLSGAAARARALELLERVGIPDPE-RRLDAyp 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1040 --LSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHhmDeadiLG------DRIA 1109
Cdd:COG4172 155 hqLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLkdLQRELGMALLLITH--D----LGvvrrfaDRVA 228
|
....*..
gi 2048025527 1110 IISHGKL 1116
Cdd:COG4172 229 VMRQGEI 235
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
1967-2133 |
1.43e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 66.83 E-value: 1.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTS--GEAFLAGKSILREIdevHQNMGYCPQFDSINELLTGREHLELYAVL 2044
Cdd:PLN03211 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTKQI---LKRTGFVTQDDILYPHLTVRETLVFCSLL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2045 R---GIPEKEVCDVAEWGIRKLGLVKYADKAAGS-----YSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWN 2116
Cdd:PLN03211 168 RlpkSLTKQEKILVAESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVL 247
|
170
....*....|....*..
gi 2048025527 2117 CIHSVIKEGRSVVLTSH 2133
Cdd:PLN03211 248 TLGSLAQKGKTIVTSMH 264
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1924-2153 |
1.82e-10 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 65.82 E-value: 1.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1924 EDVARERQRIVHGLGHgDILELRQLTkVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFL 2003
Cdd:COG3845 240 REVLLRVEKAPAEPGE-VVLEVENLS-VRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRL 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2004 AGKSI-------LRE-----IDEVHQNMGYCPQFdSINE-LLTGREHLELYAVLRGIPEKEVCD-----VAEWGIRKLGl 2065
Cdd:COG3845 318 DGEDItglspreRRRlgvayIPEDRLGRGLVPDM-SVAEnLILGRYRRPPFSRGGFLDRKAIRAfaeelIEEFDVRTPG- 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2066 vkyADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRM 2145
Cdd:COG3845 396 ---PDTPARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRI 472
|
....*...
gi 2048025527 2146 AIMVNGRF 2153
Cdd:COG3845 473 AVMYEGRI 480
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
916-1114 |
2.39e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 62.67 E-value: 2.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTG--LFPPTSGTAYILGKDIRSELSAIrqslgvcpqhnvlf 993
Cdd:COG2401 38 LRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGalKGTPVAGCVDVPDNQFGREASLI-------------- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 smltveEHIWfygrlkglSEQQVKGEIEqILQDTGLphkrSS------RTSALSGGMQRKLSVALAFVGGSKVVILDEPT 1067
Cdd:COG2401 104 ------DAIG--------RKGDFKDAVE-LLNAVGL----SDavlwlrRFKELSTGQKFRFRLALLLAERPKLLVIDEFC 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1068 AGVDP-YARRG--IWDLLLKyRQGRTIILSTHHMD-EADILGDRIAIISHG 1114
Cdd:COG2401 165 SHLDRqTAKRVarNLQKLAR-RAGITLVVATHHYDvIDDLQPDLLIFVGYG 214
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1942-2151 |
2.59e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 63.57 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLtkVFKRKQKPAVDRL---CVGIPPGECFGLLGVNGAGKTTTFKMLTG------DTLVTSGEAFLAGK--SILR 2010
Cdd:PRK13642 4 ILEVENL--VFKYEKESDVNQLngvSFSITKGEWVSIIGQNGSGKSTTARLIDGlfeefeGKVKIDGELLTAENvwNLRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2011 EIDEVHQNMGycPQFDSI---NELLTGREHlelyavlRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTA 2087
Cdd:PRK13642 82 KIGMVFQNPD--NQFVGAtveDDVAFGMEN-------QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2088 MALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLT-SHSMEECeALCTRMAIMVNG 2151
Cdd:PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSiTHDLDEA-ASSDRILVMKAG 216
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1952-2145 |
2.63e-10 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 62.56 E-value: 2.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1952 FKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREidEVHQNMGYCPQFDSINEL 2031
Cdd:PRK13543 19 FSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRSRFMAYLGHLPGLKAD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2032 LTGREHLELYAVLRGIPEKEVCDVAewgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKAR 2111
Cdd:PRK13543 97 LSTLENLHFLCGLHGRRAKQMPGSA---LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGI 173
|
170 180 190
....*....|....*....|....*....|....
gi 2048025527 2112 RALWNCIHSVIKEGRSVVLTSHSMEECEALCTRM 2145
Cdd:PRK13543 174 TLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRM 207
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
907-1116 |
2.99e-10 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 63.30 E-value: 2.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVK---VYRHGKK---------------LAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAyil 968
Cdd:PRK13546 5 VNIKNVTKeyrIYRTNKErmkdalipkhknktfFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 969 gkDIRSELSAIRQSLGVCPQhnvlfsmLTVEEHIWFYGRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGGMQRKL 1048
Cdd:PRK13546 82 --DRNGEVSVIAISAGLSGQ-------LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1049 SVALAFVGGSKVVILDEP-TAGVDPYARRGIwDLLLKYR-QGRTIILSTHHMDEADILGDRIAIISHGKL 1116
Cdd:PRK13546 153 GFSINITVNPDILVIDEAlSVGDQTFAQKCL-DKIYEFKeQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
1943-2168 |
3.27e-10 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 65.30 E-value: 3.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQKP------------------AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLA 2004
Cdd:PRK13545 5 VKFEHVTKKYKMYNKPfdklkdlffrskdgeyhyALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2005 GKSILREIDEvhqnmgycpqfdSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKL 2084
Cdd:PRK13545 85 GSAALIAISS------------GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2085 STAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2164
Cdd:PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232
|
....
gi 2048025527 2165 RFGD 2168
Cdd:PRK13545 233 HYDE 236
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
897-1130 |
4.02e-10 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 64.87 E-value: 4.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 897 EEEPAHLEPGVYIE--NLVkVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGlFPPTSGTAYILGKDIRS 974
Cdd:PRK11174 338 GEKELASNDPVTIEaeDLE-ILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRE 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 975 -ELSAIRQSLGVCPQHNVLFSMlTVEEHIWFyGRlKGLSEQQVKGEIEQI-------LQDTGLPHKRSSRTSALSGGMQR 1046
Cdd:PRK11174 416 lDPESWRKHLSWVGQNPQLPHG-TLRDNVLL-GN-PDASDEQLQQALENAwvseflpLLPQGLDTPIGDQAAGLSVGQAQ 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1047 KLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADILgDRIAIISHGKLCCVGSSLYLK 1126
Cdd:PRK11174 493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELS 571
|
....
gi 2048025527 1127 NQLG 1130
Cdd:PRK11174 572 QAGG 575
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1941-2162 |
4.30e-10 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 63.97 E-value: 4.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1941 DILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL-REIdevhQNM 2019
Cdd:PRK11432 5 NFVVLKNITKRFGSNT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVThRSI----QQR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQFDSinelltgrehlelYAVLrgiPEKEVCDVAEWGIRKLGLVK------------------YADKAAGSYSGGNM 2081
Cdd:PRK11432 79 DICMVFQS-------------YALF---PHMSLGENVGYGLKMLGVPKeerkqrvkealelvdlagFEDRYVDQISGGQQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2082 RKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQ 2160
Cdd:PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQfNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ 222
|
..
gi 2048025527 2161 HL 2162
Cdd:PRK11432 223 EL 224
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1967-2152 |
4.83e-10 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 62.08 E-value: 4.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR-EIDE-----------------VHQNMGycpqfdsi 2028
Cdd:COG3840 22 IAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTAlPPAErpvsmlfqennlfphltVAQNIG-------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2029 nelLTGREHLELYAVLRgipeKEVCDVAEwgirKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDP 2108
Cdd:COG3840 94 ---LGLRPGLKLTAEQR----AQVEQALE----RVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDP 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2048025527 2109 KARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG3840 163 ALRQEMLDLVDELCRErGLTVLMVTHDPEDAARIADRVLLVADGR 207
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1968-2152 |
6.09e-10 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 61.95 E-value: 6.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1968 PPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI-------LREIDEVHQNMGYCPQFDSINELLTGREHLeL 2040
Cdd:COG4161 26 PSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFdfsqkpsEKAIRLLRQKVGMVFQQYNLWPHLTVMENL-I 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2041 YAVLR--GIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCI 2118
Cdd:COG4161 105 EAPCKvlGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQVVEII 184
|
170 180 190
....*....|....*....|....*....|....
gi 2048025527 2119 HSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:COG4161 185 RELSQTGITQVIVTHEVEFARKVASQVVYMEKGR 218
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
916-1071 |
6.77e-10 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 61.12 E-value: 6.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT---SGTAYILGKDIRSELSAIRQSLGVCPQHNVL 992
Cdd:cd03233 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 993 FSMLTVEEHIWFYGRLKGlsEQQVKGeieqilqdtglphkrssrtsaLSGGMQRKLSVALAFVGGSKVVILDEPTAGVD 1071
Cdd:cd03233 95 FPTLTVRETLDFALRCKG--NEFVRG---------------------ISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
909-1119 |
7.24e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 63.96 E-value: 7.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKL--AVDGLTLGFYEGQITSFLGHNGAGKT-TTMSILTGLfpPTSGTAYILGkDIR----SELSAIRQ 981
Cdd:PRK15134 8 IENLSVAFRQQQTVrtVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLL--PSPPVVYPSG-DIRfhgeSLLHASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SL-----------------GVCPQHNV---LFSMLTVEehiwfygrlKGLSEQQVKGEIEQILQDTGL----------PH 1031
Cdd:PRK15134 85 TLrgvrgnkiamifqepmvSLNPLHTLekqLYEVLSLH---------RGMRREAARGEILNCLDRVGIrqaakrltdyPH 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1032 KrssrtsaLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIA 1109
Cdd:PRK15134 156 Q-------LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLreLQQELNMGLLFITHNLSIVRKLADRVA 228
|
250
....*....|
gi 2048025527 1110 IISHGKlcCV 1119
Cdd:PRK15134 229 VMQNGR--CV 236
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
909-1114 |
8.23e-10 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 61.30 E-value: 8.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVY----RHGKKL-AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTayILgkdIRSELSAI---- 979
Cdd:COG4778 7 VENLSKTFtlhlQGGKRLpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGS--IL---VRHDGGWVdlaq 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 980 ----------RQSLGVCPQH-NVL--FSML-TVEEHIwfygRLKGLSEQQVKGEIEQILQDTGLPHKR---SSRTsaLSG 1042
Cdd:COG4778 82 aspreilalrRRTIGYVSQFlRVIprVSALdVVAEPL----LERGVDREEARARARELLARLNLPERLwdlPPAT--FSG 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1043 GMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEADILGDRIAIISHG 1114
Cdd:COG4778 156 GEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAkARGTAIIGIFHDEEVREAVADRVVDVTPF 228
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
923-1071 |
8.87e-10 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 62.80 E-value: 8.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIR----SELSAIRQSLGVCPQhNVLFSM--- 995
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLgmkdDEWRAVRSDIQMIFQ-DPLASLnpr 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 996 LTVEEHI-----WFYGRlkgLSEQQVKGEIEQILQDTGL--------PHKrssrtsaLSGGMQRKLSVALAFVGGSKVVI 1062
Cdd:PRK15079 115 MTIGEIIaeplrTYHPK---LSRQEVKDRVKAMMLKVGLlpnlinryPHE-------FSGGQCQRIGIARALILEPKLII 184
|
....*....
gi 2048025527 1063 LDEPTAGVD 1071
Cdd:PRK15079 185 CDEPVSALD 193
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
920-1097 |
1.06e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 63.75 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 920 KKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDiRSELSAIRQSLGVCPQHNVLFSMLTVE 999
Cdd:PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN-RKPTKQILKRTGFVTQDDILYPHLTVR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1000 EHIWFYGRL---KGLSEQQVKGEIEQILQDTGLPHKRS-----SRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVD 1071
Cdd:PLN03211 159 ETLVFCSLLrlpKSLTKQEKILVAESVISELGLTKCENtiignSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
170 180
....*....|....*....|....*..
gi 2048025527 1072 PY-ARRGIWDLLLKYRQGRTIILSTHH 1097
Cdd:PLN03211 239 ATaAYRLVLTLGSLAQKGKTIVTSMHQ 265
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1941-2165 |
1.36e-09 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 61.25 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1941 DILELRQLTKvfkRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTT----FKMLTGDTLVTSGEAFLAGKSIL------R 2010
Cdd:PRK10418 3 QQIELRNIAL---QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTcaaaLGILPAGVRQTAGRVLLDGKPVApcalrgR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2011 EIDEVHQNmgycPQfDSINELLTGREHLELYAVLRGIPEKEvcDVAEWGIRKLGLVKyADKAAGSY----SGGNMRKLST 2086
Cdd:PRK10418 80 KIATIMQN----PR-SAFNPLHTMHTHARETCLALGKPADD--ATLTAALEAVGLEN-AARVLKLYpfemSGGMLQRMMI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2087 AMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNR 2165
Cdd:PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKrALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1942-2154 |
1.37e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 62.92 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLT--KVFKRKQKpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTL-VTSGEAFLAGK--SILREIDEVH 2016
Cdd:TIGR02633 257 ILEARNLTcwDVINPHRK-RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPgKFEGNVFINGKpvDIRNPAQAIR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2017 QNMGYCPQ---FDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAA------GSYSGGNMRKLSTA 2087
Cdd:TIGR02633 336 AGIAMVPEdrkRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTAspflpiGRLSGGNQQKAVLA 415
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2088 MALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFR 2154
Cdd:TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
927-1125 |
1.53e-09 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 60.96 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 927 LTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELS-AIRQSLGVCPQHNVLFSMLTVEEHI--- 1002
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSkAFARKVAYLPQQLPAAEGMTVRELVaig 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1003 ---WF--YGRLKGLSEQQVkgeiEQILQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRG 1077
Cdd:PRK10575 110 rypWHgaLGRFGAADREKV----EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1078 IWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYL 1125
Cdd:PRK10575 186 VLALVhrLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
1943-2136 |
1.75e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 61.64 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRK---QKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGE------------------- 2000
Cdd:PRK13651 3 IKVKNIVKIFNKKlptELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTiewifkdeknkkktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2001 ---AFLAGKSILREI---DEVHQNMGYCPQFDSInELL--TGREHLELYAVLRGIPEKEVCDVAEWGIRKLGL-VKYADK 2071
Cdd:PRK13651 83 vleKLVIQKTRFKKIkkiKEIRRRVGVVFQFAEY-QLFeqTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLdESYLQR 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2072 AAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSME 2136
Cdd:PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
929-1096 |
2.05e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 62.51 E-value: 2.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 929 LGFYEGQITsFL-GHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSE-LSAIRQslgvcpqhnvLFSmlTVeehiwF-- 1004
Cdd:COG4615 353 LTIRRGELV-FIvGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADnREAYRQ----------LFS--AV-----Fsd 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1005 ---YGRLKGLSEQQVKGEIEQILQDTGLPHK------RSSRTsALSGGmQRK-LSVALAFVGGSKVVILDEPTAGVDPYA 1074
Cdd:COG4615 415 fhlFDRLLGLDGEADPARARELLERLELDHKvsvedgRFSTT-DLSQG-QRKrLALLVALLEDRPILVFDEWAADQDPEF 492
|
170 180
....*....|....*....|....*..
gi 2048025527 1075 RRgiW---DLL--LKyRQGRTIILSTH 1096
Cdd:COG4615 493 RR--VfytELLpeLK-ARGKTVIAISH 516
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
1959-2167 |
3.22e-09 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 59.81 E-value: 3.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1959 AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI-LREIDEVHQNMGYCPQfdsiNELLTGREH 2037
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLaLADPAWLRRQVGVVLQ----ENVLFNRSI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2038 LELYAVLR-GIPEKEVCDVAEWG-----IRKL--GLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPK 2109
Cdd:cd03252 93 RDNIALADpGMSMERVIEAAKLAgahdfISELpeGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2110 ARRALWNCIHSVIKeGRSVVLTSHSMEECEAlCTRMAIMVNGRFRCLGSVQHLKNRFG 2167
Cdd:cd03252 173 SEHAIMRNMHDICA-GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAENG 228
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1967-2164 |
3.27e-09 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 59.64 E-value: 3.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKML-------TGdTLVTSGEAF-LAGKSILREIDEVHQNMGYCPQFDSINELLTGREHL 2038
Cdd:PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLnllemprSG-TLNIAGNHFdFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2039 -ELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKarraLWNC 2117
Cdd:PRK11124 104 iEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE----ITAQ 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2118 IHSVIKE----GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKN 2164
Cdd:PRK11124 180 IVSIIRElaetGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
1969-2133 |
3.56e-09 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 62.56 E-value: 3.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1969 PGECFGLLGVNGAGKTTTFKMLTGDTlvTSGeaFLAGKSILREIDEVHQNM----GYCPQFDSINELLTGREHLELYAVL 2044
Cdd:PLN03140 905 PGVLTALMGVSGAGKTTLMDVLAGRK--TGG--YIEGDIRISGFPKKQETFarisGYCEQNDIHSPQVTVRESLIYSAFL 980
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2045 R-----GIPEK-----EVCDVAEwgirklgLVKYADKAAG-----SYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPK 2109
Cdd:PLN03140 981 RlpkevSKEEKmmfvdEVMELVE-------LDNLKDAIVGlpgvtGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053
|
170 180
....*....|....*....|....
gi 2048025527 2110 ARRALWNCIHSVIKEGRSVVLTSH 2133
Cdd:PLN03140 1054 AAAIVMRTVRNTVDTGRTVVCTIH 1077
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
1956-2107 |
3.77e-09 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 60.00 E-value: 3.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1956 QKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFL--------AGKSILREIDEVHQNmGYCPQFDS 2027
Cdd:PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLdgehiqhyASKEVARRIGLLAQN-ATTPGDIT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2028 INELLT-GR-EHLELYAVLRgipeKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTG 2105
Cdd:PRK10253 98 VQELVArGRyPHQPLFTRWR----KEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173
|
..
gi 2048025527 2106 MD 2107
Cdd:PRK10253 174 LD 175
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
934-1095 |
4.32e-09 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 61.76 E-value: 4.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFSMlTVEEHIWfYGRLkGLS 1012
Cdd:COG5265 384 GKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDvTQASLRAAIGIVPQDTVLFND-TIAYNIA-YGRP-DAS 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1013 EQQVKGEIE--QILQ---------DT-----GLphKrssrtsaLSGG-MQRklsVALA--FVGGSKVVILDEPTAGVDPY 1073
Cdd:COG5265 461 EEEVEAAARaaQIHDfieslpdgyDTrvgerGL--K-------LSGGeKQR---VAIArtLLKNPPILIFDEATSALDSR 528
|
170 180
....*....|....*....|....*..
gi 2048025527 1074 ARRGIWDLLLKYRQGRT--II---LST 1095
Cdd:COG5265 529 TERAIQAALREVARGRTtlVIahrLST 555
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1970-2136 |
4.97e-09 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 59.60 E-value: 4.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1970 GECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKsilrEIDEVHQNMGYCPQFDSIN-ELLTGR-----EHLELYA- 2042
Cdd:PRK10619 31 GDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQ----TINLVRDKDGQLKVADKNQlRLLRTRltmvfQHFNLWSh 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2043 --VLRGIPEKEV-------CDVAEWGIRKLGLVKYADKAAGSY----SGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPK 2109
Cdd:PRK10619 107 mtVLENVMEAPIqvlglskQEARERAVKYLAKVGIDERAQGKYpvhlSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
|
170 180
....*....|....*....|....*..
gi 2048025527 2110 ARRALWNCIHSVIKEGRSVVLTSHSME 2136
Cdd:PRK10619 187 LVGEVLRIMQQLAEEGKTMVVVTHEMG 213
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
909-1122 |
5.07e-09 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 59.42 E-value: 5.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKL-------AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGK-----DIRSEL 976
Cdd:PRK15112 7 VRNLSKTFRYRTGWfrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHplhfgDYSYRS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 977 SAIRQ-----SLGVCPQHNvlfsmltVEEHIWFYGRLK-GLSEQQVKGEIEQILQDTGL-PHKRSSRTSALSGGMQRKLS 1049
Cdd:PRK15112 87 QRIRMifqdpSTSLNPRQR-------ISQILDFPLRLNtDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLG 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 1050 VALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKY--RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSS 1122
Cdd:PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELqeKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGST 234
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
916-1134 |
5.21e-09 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 61.27 E-value: 5.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTayILGKDI---RSELSAIRQSLGVCPQHNVL 992
Cdd:PRK10789 323 YPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD--IRFHDIpltKLQLDSWRSRLAVVSQTPFL 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 993 FSMlTVEEHIWFyGRLKGLSEQqvkgeIEQ----------ILQdtgLPHKRSS----RTSALSGGMQRKLSVALAFVGGS 1058
Cdd:PRK10789 401 FSD-TVANNIAL-GRPDATQQE-----IEHvarlasvhddILR---LPQGYDTevgeRGVMLSGGQKQRISIARALLLNA 470
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1059 KVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMdEADILGDRIAIISHGKLCCVGSSLYLKNQlgTGYY 1134
Cdd:PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRL-SALTEASEILVMQHGHIAQRGNHDQLAQQ--SGWY 543
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1942-2154 |
5.36e-09 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 61.10 E-value: 5.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLT---KVFKRKQKpaVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTL-VTSGEAFLAGK--SILREIDEV 2015
Cdd:PRK13549 259 ILEVRNLTawdPVNPHIKR--VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKpvKIRNPQQAI 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2016 HQNMGYCPQ---FDSINELLTGREHLELyAVLRGIPEKEVCD------VAEWGIRKLGlVKYA--DKAAGSYSGGNMRKL 2084
Cdd:PRK13549 337 AQGIAMVPEdrkRDGIVPVMGVGKNITL-AALDRFTGGSRIDdaaelkTILESIQRLK-VKTAspELAIARLSGGNQQKA 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2085 STAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFR 2154
Cdd:PRK13549 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
919-1121 |
9.57e-09 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 58.59 E-value: 9.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 919 GKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTayilgkdIRSElSAIRqsLGVCPQHNVLFSM--L 996
Cdd:PRK09544 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV-------IKRN-GKLR--IGYVPQKLYLDTTlpL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 997 TVEehiwfygRLKGLSEQQVKGEIEQILQDTGLPHKRSSRTSALSGG-MQRKLsVALAFVGGSKVVILDEPTAGVDPYAR 1075
Cdd:PRK09544 85 TVN-------RFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGeTQRVL-LARALLNRPQLLVLDEPTQGVDVNGQ 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1076 RGIWDLLLKYRQ--GRTIILSTH--HMDEADIlgDRIAIISHgKLCCVGS 1121
Cdd:PRK09544 157 VALYDLIDQLRRelDCAVLMVSHdlHLVMAKT--DEVLCLNH-HICCSGT 203
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
1958-2107 |
9.71e-09 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 60.91 E-value: 9.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1958 PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlREID--EVHQNMGYCPQ----FD-SI-- 2028
Cdd:TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL-KDIDrhTLRQFINYLPQepyiFSgSIle 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2029 NELLTGREHLELYAVlrgipeKEVCDVAEwgIRK------LGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEP 2102
Cdd:TIGR01193 567 NLLLGAKENVSQDEI------WAACEIAE--IKDdienmpLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDES 638
|
....*
gi 2048025527 2103 TTGMD 2107
Cdd:TIGR01193 639 TSNLD 643
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
1963-2162 |
1.07e-08 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 58.65 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1963 LCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAG--------KSILREIdevhqnmGYCPQFDSINELLTG 2034
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAqpleswssKAFARKV-------AYLPQQLPAAEGMTV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2035 RehlELYAVLR----------GIPEKEVCDVAewgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTT 2104
Cdd:PRK10575 103 R---ELVAIGRypwhgalgrfGAADREKVEEA---ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2105 GMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL 2162
Cdd:PRK10575 177 ALDIAHQVDVLALVHRLSQErGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1937-2136 |
1.08e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 59.09 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1937 LGHGDILELRQLTKVFKRKQK---PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGdtLVTSGEAFLAGKSILREID 2013
Cdd:PRK13631 16 LSDDIILRVKNLYCVFDEKQEnelVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG--LIKSKYGTIQVGDIYIGDK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2014 EVHQNMGYCPQFDSINELLTGREHLEL------YAVLR--------------GIPEKEVCDVAEWGIRKLGL-VKYADKA 2072
Cdd:PRK13631 94 KNNHELITNPYSKKIKNFKELRRRVSMvfqfpeYQLFKdtiekdimfgpvalGVKKSEAKKLAKFYLNKMGLdDSYLERS 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2073 AGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSME 2136
Cdd:PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
1967-2133 |
1.51e-08 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 55.53 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGeaflagksilreIDEVHQN--MGYCPQFdsinelltgrehlelyavl 2044
Cdd:cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG------------IVTWGSTvkIGYFEQL------------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2045 rgipekevcdvaewgirklglvkyadkaagsySGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALwncIHSVIKE 2124
Cdd:cd03221 72 --------------------------------SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL---EEALKEY 116
|
....*....
gi 2048025527 2125 GRSVVLTSH 2133
Cdd:cd03221 117 PGTVILVSH 125
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
1975-2158 |
1.63e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 58.48 E-value: 1.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1975 LLGVNGAGKTTTFKMLTGDTLVTSGEAFL------AGKSILREIDEVHQNMGYCPQF-------DSINELLT------GR 2035
Cdd:PRK13645 42 VIGTTGSGKSTMIQLTNGLIISETGQTIVgdyaipANLKKIKEVKRLRKEIGLVFQFpeyqlfqETIEKDIAfgpvnlGE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2036 EHLELYavlRGIPEKevcdvaewgirkLGLVK----YADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKAR 2111
Cdd:PRK13645 122 NKQEAY---KKVPEL------------LKLVQlpedYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2048025527 2112 RALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS 2158
Cdd:PRK13645 187 EDFINLFERLNKEyKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
934-1115 |
1.70e-08 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 56.71 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGkdirselsairqSLGVCPQHNVLFSMlTVEEHIWFygrLKGLSE 1013
Cdd:cd03250 31 GELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQEPWIQNG-TIRENILF---GKPFDE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1014 QQVKGEIE--QILQDTG-LPHKR----SSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL--K 1084
Cdd:cd03250 95 ERYEKVIKacALEPDLEiLPDGDlteiGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCIlgL 174
|
170 180 190
....*....|....*....|....*....|....
gi 2048025527 1085 YRQGRTIILSTHHMD---EAdilgDRIAIISHGK 1115
Cdd:cd03250 175 LLNNKTRILVTHQLQllpHA----DQIVVLDNGR 204
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
909-1099 |
1.75e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 60.31 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPpTSGTAYILGKDIRS-ELSAIRQSLGVCP 987
Cdd:TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSvTLQTWRKAFGVIP 1298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVLFS----------MLTVEEHIWFYGRLKGLSE--QQVKGEIEQILQDTGLphkrssrtsALSGGMQRKLSVALAFV 1055
Cdd:TIGR01271 1299 QKVFIFSgtfrknldpyEQWSDEEIWKVAEEVGLKSviEQFPDKLDFVLVDGGY---------VLSNGHKQLMCLARSIL 1369
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMD 1099
Cdd:TIGR01271 1370 SKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
1940-2152 |
1.95e-08 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 59.73 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1940 GDIlELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAG--------KSILRE 2011
Cdd:TIGR02203 329 GDV-EFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGhdladytlASLRRQ 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2012 IDEVHQNMGYcpqF-DSINELLTgrehlelYAVLRGIPEKEVCDVAEWGIRK-------LGLVKYADKAAGSYSGGNMRK 2083
Cdd:TIGR02203 408 VALVSQDVVL---FnDTIANNIA-------YGRTEQADRAEIERALAAAYAQdfvdklpLGLDTPIGENGVLLSGGQRQR 477
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2084 LSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIkEGRSVVLTSHSMEECEAlCTRMAIMVNGR 2152
Cdd:TIGR02203 478 LAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEK-ADRIVVMDDGR 544
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
1967-2159 |
2.57e-08 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 56.38 E-value: 2.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTG--DTLVTSGEAFLAGKSILreidevhqNMgycpqfdSINElltgRehlelyaVL 2044
Cdd:cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGhpKYEVTEGEILFKGEDIT--------DL-------PPEE----R-------AR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2045 RGI-------PEKEvcdvaewGIRKLGLVKYADKaagSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNC 2117
Cdd:cd03217 77 LGIflafqypPEIP-------GVKNADFLRYVNE---GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEV 146
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2048025527 2118 IHSVIKEGRSVVLTSHSMEECEAL-CTRMAIMVNGRFRCLGSV 2159
Cdd:cd03217 147 INKLREEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDK 189
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
934-1114 |
2.62e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.60 E-value: 2.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIlgkdirselsaIRQSLGVCPQHNVLFSMlTVEEHIWFYGRLKglSE 1013
Cdd:PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-----------IRGSVAYVPQVSWIFNA-TVRENILFGSDFE--SE 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1014 QQVKG-EIEQILQDTGLPHKRS-----SRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR- 1086
Cdd:PLN03232 709 RYWRAiDVTALQHDLDLLPGRDlteigERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEl 788
|
170 180
....*....|....*....|....*...
gi 2048025527 1087 QGRTIILSTHHMDEADILgDRIAIISHG 1114
Cdd:PLN03232 789 KGKTRVLVTNQLHFLPLM-DRIILVSEG 815
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
1921-2133 |
2.99e-08 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 59.02 E-value: 2.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1921 EEDEDVARERQRIVHGLGHGDIlELRQLTkvFK-RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG--DtlVT 1997
Cdd:COG1132 319 DEPPEIPDPPGAVPLPPVRGEI-EFENVS--FSyPGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRfyD--PT 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1998 SGEAFLAGKSIlREID--EVHQNMGYCPQ----F-DSINE-LLTGREHL---ELYAVLRgipekeVCDVAEWgIRKL--G 2064
Cdd:COG1132 394 SGRILIDGVDI-RDLTleSLRRQIGVVPQdtflFsGTIREnIRYGRPDAtdeEVEEAAK------AAQAHEF-IEALpdG 465
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2065 LVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKeGRSVVLTSH 2133
Cdd:COG1132 466 YDTVVGERGVNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMK-GRTTIVIAH 533
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1942-2107 |
3.10e-08 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 57.82 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTK-------VFKRKQKP--AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIL--- 2009
Cdd:COG4608 7 LLEVRDLKKhfpvrggLFGRTVGVvkAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITgls 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2010 -REIDEVHQNMGYCPQ--FDSINELLTGREHL-ELYAVLRGIPEKEVCDVAEWGIRKLGL-VKYADKAAGSYSGGNMRKL 2084
Cdd:COG4608 87 gRELRPLRRRMQMVFQdpYASLNPRMTVGDIIaEPLRIHGLASKAERRERVAELLELVGLrPEHADRYPHEFSGGQRQRI 166
|
170 180
....*....|....*....|...
gi 2048025527 2085 STAMALIGAPPVVFLDEPTTGMD 2107
Cdd:COG4608 167 GIARALALNPKLIVCDEPVSALD 189
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
907-1116 |
3.34e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.22 E-value: 3.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI-RSELSAIRQSLGV 985
Cdd:PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVaKFGLTDLRRVLSI 1314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQHNVLFS------MLTVEEH----IWfygrlKGLSEQQVKGEIEQilQDTGLPHKRSSRTSALSGGMQRKLSVALAFV 1055
Cdd:PLN03232 1315 IPQSPVLFSgtvrfnIDPFSEHndadLW-----EALERAHIKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSLARALL 1387
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEAdILGDRIAIISHGKL 1116
Cdd:PLN03232 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI-IDCDKILVLSSGQV 1447
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
1959-2157 |
3.55e-08 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 57.13 E-value: 3.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1959 AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGksilrEIDEVHQNMGycpqfdsINELLTGREHL 2038
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAISAG-------LSGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2039 ELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCI 2118
Cdd:PRK13546 107 EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186
|
170 180 190
....*....|....*....|....*....|....*....
gi 2048025527 2119 HSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLG 2157
Cdd:PRK13546 187 YEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1942-2152 |
3.71e-08 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 56.86 E-value: 3.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEA-FLAGKSILREIDE------ 2014
Cdd:PRK11701 6 LLSVRGLTKLYGPRK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhYRMRDGQLRDLYAlseaer 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 ----------VHQN--MGYCPQFDS---INELL--TGREHlelYAVLRGIpekevcdVAEWgirkLGLVKYA----DKAA 2073
Cdd:PRK11701 84 rrllrtewgfVHQHprDGLRMQVSAggnIGERLmaVGARH---YGDIRAT-------AGDW----LERVEIDaariDDLP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2074 GSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK11701 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRElGLAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1967-2107 |
3.82e-08 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 56.36 E-value: 3.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI----------LReidevHQNMGYCPQFDSINELLTGRE 2036
Cdd:PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMsklssaakaeLR-----NQKLGFIYQFHHLLPDFTALE 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2037 HLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMD 2107
Cdd:PRK11629 107 NVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
1957-2133 |
4.00e-08 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 56.47 E-value: 4.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1957 KPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlREI--DEVHQNMGYCPQ----F-DSI- 2028
Cdd:cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI-REVtlDSLRRAIGVVPQdtvlFnDTIg 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2029 ------------NELLTGREHLELYAVLRGIPEKEVCDVAEWGIrKLglvkyadkaagsySGGNMRKLSTAMALIGAPPV 2096
Cdd:cd03253 93 ynirygrpdatdEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGL-KL-------------SGGEKQRVAIARAILKNPPI 158
|
170 180 190
....*....|....*....|....*....|....*..
gi 2048025527 2097 VFLDEPTTGMDPKARRALWNCIHSVIKeGRSVVLTSH 2133
Cdd:cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAH 194
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1969-2152 |
4.53e-08 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 56.04 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1969 PGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR----EIDEVHQNMGYCPQfdsINELLTGR---EHLELY 2041
Cdd:PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRlknrEVPFLRRQIGMIFQ---DHHLLMDRtvyDNVAIP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2042 AVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSV 2121
Cdd:PRK10908 104 LIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF 183
|
170 180 190
....*....|....*....|....*....|.
gi 2048025527 2122 IKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK10908 184 NRVGVTVLMATHDIGLISRRSYRMLTLSDGH 214
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
909-1116 |
4.60e-08 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 56.79 E-value: 4.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPpTSGTAYILGKDIRS-ELSAIRQSLGVCP 987
Cdd:cd03289 5 VKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSvPLQKWRKAFGVIP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVLFSMLT----------VEEHIWFYGRLKGLSE--QQVKGEIEQILQDTGLphkrssrtsALSGGMQRKLSVALAFV 1055
Cdd:cd03289 84 QKVFIFSGTFrknldpygkwSDEEIWKVAEEVGLKSviEQFPGQLDFVLVDGGC---------VLSHGHKQLMCLARSVL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMdEADILGDRIAIISHGKL 1116
Cdd:cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI-EAMLECQRFLVIEENKV 214
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1942-2152 |
4.92e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 58.20 E-value: 4.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKvfkrKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILRE---------- 2011
Cdd:PRK10982 250 ILEVRNLTS----LRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHnaneainhgf 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2012 --IDEVHQNMGYCPQFD-SINELLTG-REHLELYAVLRgipEKEVCDVAEWGIRKLGLVKYADKAA-GSYSGGNMRKLST 2086
Cdd:PRK10982 326 alVTEERRSTGIYAYLDiGFNSLISNiRNYKNKVGLLD---NSRMKSDTQWVIDSMRVKTPGHRTQiGSLSGGNQQKVII 402
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2087 AMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK10982 403 GRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
1967-2152 |
5.61e-08 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 55.17 E-value: 5.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKsilreidevhqnMGYCPQF-----DSINE-LLTGREHL-E 2039
Cdd:cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS------------IAYVSQEpwiqnGTIREnILFGKPFDeE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2040 LY-AVLRgipekeVC------------DVAEWGIRKLGLvkyadkaagsySGGNMRKLSTAMALIGAPPVVFLDEPTTGM 2106
Cdd:cd03250 96 RYeKVIK------ACalepdleilpdgDLTEIGEKGINL-----------SGGQKQRISLARAVYSDADIYLLDDPLSAV 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2048025527 2107 DPKARRALW-NCIHSVIKEGRSVVLTSHSMEECEAlCTRMAIMVNGR 2152
Cdd:cd03250 159 DAHVGRHIFeNCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1959-2153 |
5.95e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 57.82 E-value: 5.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1959 AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI----LRE-----IDEVHQNMGYCPQFDSIN 2029
Cdd:PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfksSKEalengISMVHQELNLVLQRSVMD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2030 ELLTGR--------EHLELYAVLRGIpekevcdVAEWGIRklglVKYADKAAgSYSGGNMRKLSTAMALIGAPPVVFLDE 2101
Cdd:PRK10982 93 NMWLGRyptkgmfvDQDKMYRDTKAI-------FDELDID----IDPRAKVA-TLSVSQMQMIEIAKAFSYNAKIVIMDE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2102 PTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQW 212
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1942-2151 |
6.13e-08 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 55.94 E-value: 6.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLT--GD---TLVTSGEAFLAGKSI-------- 2008
Cdd:PRK14239 5 ILQVSDLSVYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDlnpEVTITGSIVYNGHNIysprtdtv 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2009 -LR-EIDEVHQNMGYCPQfdSINELLtgrehleLYAV-LRGIPEKEVCDVA-EWGIRKLGL---VK--YADKAAGsYSGG 2079
Cdd:PRK14239 83 dLRkEIGMVFQQPNPFPM--SIYENV-------VYGLrLKGIKDKQVLDEAvEKSLKGASIwdeVKdrLHDSALG-LSGG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 2080 NMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSvIKEGRSVVLTSHSMEECEALCTRMAIMVNG 2151
Cdd:PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG-LKDDYTMLLVTRSMQQASRISDRTGFFLDG 223
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1942-2152 |
6.27e-08 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 57.63 E-value: 6.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGdtlVT-----SGEAFLAGKSI----LREI 2012
Cdd:PRK13549 5 LLEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG---VYphgtyEGEIIFEGEELqasnIRDT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2013 DE-----VHQNMGYCPQFDSINELLTGREhlelyaVLRG--IPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLS 2085
Cdd:PRK13549 80 ERagiaiIHQELALVKELSVLENIFLGNE------ITPGgiMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2086 TAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1967-2133 |
9.37e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 55.69 E-value: 9.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLtgDTLV-------TSGEAFLAGKSILR-EIDEVHQNMGYCPQFDSINELLTGREHL 2038
Cdd:PRK14247 26 IPDNTITALMGPSGSGKSTLLRVF--NRLIelypearVSGEVYLDGQDIFKmDVIELRRRVQMVFQIPNPIPNLSIFENV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2039 ELYAVLRGI--PEKEVCDVAEWGIRKLGL---VK-YADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARR 2112
Cdd:PRK14247 104 ALGLKLNRLvkSKKELQERVRWALEKAQLwdeVKdRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
|
170 180
....*....|....*....|.
gi 2048025527 2113 ALWNCIHSVIKEgRSVVLTSH 2133
Cdd:PRK14247 184 KIESLFLELKKD-MTIVLVTH 203
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
1937-2152 |
9.65e-08 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 55.45 E-value: 9.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1937 LGHGDILELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEaFLAGKSILREIDEVH 2016
Cdd:PRK11247 7 LNQGTPLLLNAVSKRYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAGTAPLAEAREDT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2017 QNMgycpqfdsinelltgrehlelYAVLRGIPEKEVCDVAEWGIR---------KLGLVKYADKAA---GSYSGGNMRKL 2084
Cdd:PRK11247 84 RLM---------------------FQDARLLPWKKVIDNVGLGLKgqwrdaalqALAAVGLADRANewpAALSGGQKQRV 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2085 STAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK11247 143 ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQhGFTVLLVTHDVSEAVAMADRVLLIEEGK 211
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1969-2133 |
1.16e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 55.45 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1969 PGECFGLLGVNGAGKTTTFKMLTGdtlvtsgeaflagksilreidEVHQNMG-YC--PQFDSINELLTGREHLELYAVLR 2045
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAG---------------------KLKPNLGkFDdpPDWDEILDEFRGSELQNYFTKLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2046 G--------------IP------------EKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFL 2099
Cdd:cd03236 84 EgdvkvivkpqyvdlIPkavkgkvgellkKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFF 163
|
170 180 190
....*....|....*....|....*....|....
gi 2048025527 2100 DEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSH 2133
Cdd:cd03236 164 DEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH 197
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1942-2152 |
1.27e-07 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 57.17 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFK---------RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI---- 2008
Cdd:PRK10261 313 ILQVRNLVTRFPlrsgllnrvTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIdtls 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2009 LREIDEVHQNMGYCPQ--FDSINELLT-GREHLELYAVLRGIPEKEVCDVAEWGIRKLGLV-KYADKAAGSYSGGNMRKL 2084
Cdd:PRK10261 393 PGKLQALRRDIQFIFQdpYASLDPRQTvGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLpEHAWRYPHEFSGGQRQRI 472
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2085 STAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGR 2152
Cdd:PRK10261 473 CIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDfGIAYLFISHDMAVVERISHRVAVMYLGQ 541
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1942-2133 |
1.36e-07 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 57.04 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFK--RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILR-EIDEVHQ- 2017
Cdd:PRK10535 4 LLELKDIRRSYPsgEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATlDADALAQl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2018 ---NMGYCPQFDSINELLTGREHLELYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAP 2094
Cdd:PRK10535 84 rreHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163
|
170 180 190
....*....|....*....|....*....|....*....
gi 2048025527 2095 PVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSH 2133
Cdd:PRK10535 164 QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
941-1072 |
1.70e-07 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 54.08 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 941 GHNGAGKTTTMSILTGLFPPTSGTAYILGKDI-RSELSAIRQSLGVCPQhnvLFSMLTVEEHIWFYGRLKGLSEQQVKGE 1019
Cdd:PRK13543 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAtRGDRSRFMAYLGHLPG---LKADLSTLENLHFLCGLHGRRAKQMPGS 120
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 1020 IEQILqdtGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDP 1072
Cdd:PRK13543 121 ALAIV---GLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
923-1115 |
2.32e-07 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 55.85 E-value: 2.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTT-MSILtGLFpPTSGTAYILGKDI----RSELSAIRQSLgvcpQhnVLF---- 993
Cdd:COG4172 301 AVDGVSLTLRRGETLGLVGESGSGKSTLgLALL-RLI-PSEGEIRFDGQDLdglsRRALRPLRRRM----Q--VVFqdpf 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 994 -SM---LTVEE---------HIwfygrlkGLSEQQVKGEIEQILQDTGL--------PHkrssrtsALSGGmQR-KLSVA 1051
Cdd:COG4172 373 gSLsprMTVGQiiaeglrvhGP-------GLSAAERRARVAEALEEVGLdpaarhryPH-------EFSGG-QRqRIAIA 437
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 1052 LAFVGGSKVVILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGK 1115
Cdd:COG4172 438 RALILEPKLLVLDEPTSALDVSVQAQILDLLrdLQREHGLAYLFISHDLAVVRALAHRVMVMKDGK 503
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
923-1120 |
3.21e-07 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 55.63 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIR----SELSAIRQSL---------GVCPQH 989
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDtlspGKLQALRRDIqfifqdpyaSLDPRQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 990 NVLFSMLtveEHIWFYGRLKGLSEQQvkgEIEQILQDTGLPHKRSSR-TSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:PRK10261 419 TVGDSIM---EPLRVHGLLPGKAAAA---RVAWLLERVGLLPEHAWRyPHEFSGGQRQRICIARALALNPKVIIADEAVS 492
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 1069 GVDPYARRGIWDLLLKYRQ--GRTIILSTHHMDEADILGDRIAIISHGKLCCVG 1120
Cdd:PRK10261 493 ALDVSIRGQIINLLLDLQRdfGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1957-2137 |
3.23e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 55.41 E-value: 3.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1957 KPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGD---------TLVT----SGEAflagksilreIDEVHQNMGYCP 2023
Cdd:PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDhpqgysndlTLFGrrrgSGET----------IWDIKKHIGYVS 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2024 Q--------------------FDSInelltgrehlelyAVLRGIPEKEVCDVAEWgIRKLGLVKY-ADKAAGSYSGGNMR 2082
Cdd:PRK10938 343 SslhldyrvstsvrnvilsgfFDSI-------------GIYQAVSDRQQKLAQQW-LDILGIDKRtADAPFHSLSWGQQR 408
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2048025527 2083 KLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVL-TSHSMEE 2137
Cdd:PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLfVSHHAED 464
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
932-1116 |
3.29e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 55.51 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 932 YEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI--RSELSAI----------RQSLGVCPQHNVLFSMLtVE 999
Cdd:PRK10982 272 HKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKInnHNANEAInhgfalvteeRRSTGIYAYLDIGFNSL-IS 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1000 EHIWFYGRLKGLSEQQVKGEIEQILqDTGLPHKRSSRTS--ALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRG 1077
Cdd:PRK10982 351 NIRNYKNKVGLLDNSRMKSDTQWVI-DSMRVKTPGHRTQigSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE 429
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2048025527 1078 IWDLLLKY-RQGRTIILSTHHMDEadILG--DRIAIISHGKL 1116
Cdd:PRK10982 430 IYQLIAELaKKDKGIIIISSEMPE--LLGitDRILVMSNGLV 469
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
926-1096 |
3.31e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 56.01 E-value: 3.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 926 GLTLGFYEGQITSFLGHNGAGKTTTMSILTGlfPPTSGtaYILGkDIRSELSAIRQSL-----GVCPQHNVLFSMLTVEE 1000
Cdd:PLN03140 898 EVTGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEG-DIRISGFPKKQETfarisGYCEQNDIHSPQVTVRE 972
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1001 HIWF--YGRL-KGLSEQQVKGEIEQI--------LQDT--GLPHkrssrTSALSGGMQRKLSVALAFVGGSKVVILDEPT 1067
Cdd:PLN03140 973 SLIYsaFLRLpKEVSKEEKMMFVDEVmelveldnLKDAivGLPG-----VTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047
|
170 180 190
....*....|....*....|....*....|....*.
gi 2048025527 1068 AGVDPYAR-------RGIWDlllkyrQGRTIILSTH 1096
Cdd:PLN03140 1048 SGLDARAAaivmrtvRNTVD------TGRTVVCTIH 1077
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1942-2152 |
4.14e-07 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 55.10 E-value: 4.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRK--QKPAVDRLCVGIPPGECFGLLGVNGAGKTTT----FKMLTGDTLV-TSGEAFLAGKSIL----R 2010
Cdd:PRK15134 5 LLAIENLSVAFRQQqtVRTVVNDVSLQIEAGETLALVGESGSGKSVTalsiLRLLPSPPVVyPSGDIRFHGESLLhaseQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2011 EIDEVHQN---MGYCPQFDSINELLTgrehLE--LYAVL---RGIPEK----EVCDVAEW-GIRKlglvkyADKAAGSY- 2076
Cdd:PRK15134 85 TLRGVRGNkiaMIFQEPMVSLNPLHT----LEkqLYEVLslhRGMRREaargEILNCLDRvGIRQ------AAKRLTDYp 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2077 ---SGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRAlwncIHSVIKE-----GRSVVLTSHSMEECEALCTRMAIM 2148
Cdd:PRK15134 155 hqlSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQ----ILQLLRElqqelNMGLLFITHNLSIVRKLADRVAVM 230
|
....
gi 2048025527 2149 VNGR 2152
Cdd:PRK15134 231 QNGR 234
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1939-2164 |
4.28e-07 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 53.62 E-value: 4.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1939 HGDILELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI----LREIDE 2014
Cdd:PRK11831 4 VANLVDMRGVS--FTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsRSRLYT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2015 VHQNMGYCPQ----------FDSINELLtgREHLELyavlrgiPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKL 2084
Cdd:PRK11831 82 VRKRMSMLFQsgalftdmnvFDNVAYPL--REHTQL-------PAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2085 STAMALIGAPPVVFLDEPTTGMDPKARRALWNCI----HSVikeGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQ 2160
Cdd:PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLIselnSAL---GVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQ 229
|
....
gi 2048025527 2161 HLKN 2164
Cdd:PRK11831 230 ALQA 233
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
921-1130 |
4.57e-07 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 55.02 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 921 KLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQHNVLFSMlTVE 999
Cdd:PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDyTLASLRNQVALVSQNVHLFND-TIA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1000 EHIwFYGRlkglSEQQVKGEIEQILQ-----------DTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:PRK11176 435 NNI-AYAR----TEQYSREQIEEAARmayamdfinkmDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1069 GVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADiLGDRIAIISHGKLCCVGSSLYLKNQLG 1130
Cdd:PRK11176 510 ALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQNG 570
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1967-2107 |
5.39e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 54.96 E-value: 5.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGE-------------------------AFLAG-----KSILREIDEVH 2016
Cdd:PRK11147 26 IEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRiiyeqdlivarlqqdpprnvegtvyDFVAEgieeqAEYLKRYHDIS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2017 QNMGYCPQFDSINELLTGRE---HLELYAVLRGIpeKEVCDvaewgirKLGLvkYADKAAGSYSGGNMRKLSTAMALIGA 2093
Cdd:PRK11147 106 HLVETDPSEKNLNELAKLQEqldHHNLWQLENRI--NEVLA-------QLGL--DPDAALSSLSGGWLRKAALGRALVSN 174
|
170
....*....|....
gi 2048025527 2094 PPVVFLDEPTTGMD 2107
Cdd:PRK11147 175 PDVLLLDEPTNHLD 188
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1974-2137 |
9.54e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 52.73 E-value: 9.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1974 GLLGVNGAGKTTTFKMLT------GDTLVtSGEAFLAGKSIL----------REIDEVHQNMGYCPQ--FDSIN---ELL 2032
Cdd:PRK14258 37 AIIGPSGCGKSTFLKCLNrmneleSEVRV-EGRVEFFNQNIYerrvnlnrlrRQVSMVHPKPNLFPMsvYDNVAygvKIV 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2033 TGREHLELyavlRGIPEKEVCDVAEWGIRKLGLvkyaDKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARR 2112
Cdd:PRK14258 116 GWRPKLEI----DDIVESALKDADLWDEIKHKI----HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187
|
170 180
....*....|....*....|....*.
gi 2048025527 2113 ALWNCIHSV-IKEGRSVVLTSHSMEE 2137
Cdd:PRK14258 188 KVESLIQSLrLRSELTMVIVSHNLHQ 213
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1940-2114 |
1.27e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 53.58 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1940 GDI-LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEaflagksiLREIDEVHqn 2018
Cdd:PRK11819 321 GDKvIEAENLSKSFGDRL--LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT--------IKIGETVK-- 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2019 MGYCPQFdsinelltgREHLElyavlrgiPEKEVCDVAEWG--IRKLGLV-------------KYAD--KAAGSYSGGNM 2081
Cdd:PRK11819 389 LAYVDQS---------RDALD--------PNKTVWEEISGGldIIKVGNReipsrayvgrfnfKGGDqqKKVGVLSGGER 451
|
170 180 190
....*....|....*....|....*....|...
gi 2048025527 2082 RKLSTAMALIGAPPVVFLDEPTTGMDPKARRAL 2114
Cdd:PRK11819 452 NRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
919-1096 |
1.30e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 50.44 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 919 GKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMsiltglfpptSGTAYILGkdirSELSAIRQSLGVCPQHNVLFSMLTv 998
Cdd:cd03227 6 RFPSYFVPNDVTFGEGSLTIITGPNGSGKSTIL----------DAIGLALG----GAQSATRRRSGVKAGCIVAAVSAE- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 999 eehiwFYGRLKGlseqqvkgeieqilqdtglphkrssrtsaLSGGMQRKLSVALAF----VGGSKVVILDEPTAGVDPYA 1074
Cdd:cd03227 71 -----LIFTRLQ-----------------------------LSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRD 116
|
170 180
....*....|....*....|...
gi 2048025527 1075 RRGIWDLLLKYRQ-GRTIILSTH 1096
Cdd:cd03227 117 GQALAEAILEHLVkGAQVIVITH 139
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1969-2135 |
1.32e-06 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 52.04 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1969 PGECFGLLGVNGAGKTTTFKMLTGDTLVTSGeaflagkSILREideVHQNMGYCPQ---FDSINELLTGRehlelYAVLR 2045
Cdd:PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-------VIKRN---GKLRIGYVPQklyLDTTLPLTVNR-----FLRLR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2046 -GIPEKEVCDVaewgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE 2124
Cdd:PRK09544 94 pGTKKEDILPA----LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE 169
|
170
....*....|..
gi 2048025527 2125 -GRSVVLTSHSM 2135
Cdd:PRK09544 170 lDCAVLMVSHDL 181
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
921-1108 |
1.43e-06 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 52.03 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 921 KLAVDGLTlgFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSElsairqslgvcPQHNVLFSMLTVEE 1000
Cdd:cd03237 14 TLEVEGGS--ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-----------PQYIKADYEGTVRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1001 hiWFYGRLKGLSEQ-QVKGEIEQILQDTGLphkRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYAR---- 1075
Cdd:cd03237 81 --LLSSITKDFYTHpYFKTEIAKPLQIEQI---LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRlmas 155
|
170 180 190
....*....|....*....|....*....|...
gi 2048025527 1076 RGIWDLLLKYRqgRTIILSTHHMDEADILGDRI 1108
Cdd:cd03237 156 KVIRRFAENNE--KTAFVVEHDIIMIDYLADRL 186
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
934-1116 |
1.93e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 53.59 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIlgkdirselsaIRQSLGVCPQHNVLFSMlTVEEHIWFygrlkGLSE 1013
Cdd:PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-----------IRGTVAYVPQVSWIFNA-TVRDNILF-----GSPF 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1014 QQVKgeIEQILQDTGLPHKRSS-----------RTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL 1082
Cdd:PLN03130 706 DPER--YERAIDVTALQHDLDLlpggdlteigeRGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC 783
|
170 180 190
....*....|....*....|....*....|....*...
gi 2048025527 1083 LKYR-QGRTIILST---HHMDEAdilgDRIAIISHGKL 1116
Cdd:PLN03130 784 IKDElRGKTRVLVTnqlHFLSQV----DRIILVHEGMI 817
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1942-2137 |
1.95e-06 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 51.25 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTkvFKRKQKPAVDRLCVGIPPGEcFGLL-GVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSILREIDEVH-QNM 2019
Cdd:PRK10247 7 LLQLQNVG--YLAGDAKILNNISFSLRAGE-FKLItGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYrQQV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2020 GYCPQFDSinelLTG---REHLELYAVLRGI---PEKEVCDVAEWGIRKLGLvkyaDKAAGSYSGGNMRKLSTAMALIGA 2093
Cdd:PRK10247 84 SYCAQTPT----LFGdtvYDNLIFPWQIRNQqpdPAIFLDDLERFALPDTIL----TKNIAELSGGEKQRISLIRNLQFM 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2048025527 2094 PPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVL-TSHSMEE 2137
Cdd:PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLwVTHDKDE 200
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1970-2153 |
2.21e-06 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 52.87 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1970 GECFGLLGVNGAGKTTtFKM-LTGDTLVT--SGEAFLAGKSI-LREIDE-VHQNMGYCPQ---------FDSINELLTGr 2035
Cdd:NF040905 286 GEIVGIAGLMGAGRTE-LAMsVFGRSYGRniSGTVFKDGKEVdVSTVSDaIDAGLAYVTEdrkgyglnlIDDIKRNITL- 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2036 ehlelyAVLRGIPEKEVCD------VAEwGIRKlglvKYADKA------AGSYSGGNMRKLSTAMALIGAPPVVFLDEPT 2103
Cdd:NF040905 364 ------ANLGKVSRRGVIDeneeikVAE-EYRK----KMNIKTpsvfqkVGNLSGGNQQKVVLSKWLFTDPDVLILDEPT 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2104 TGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRF 2153
Cdd:NF040905 433 RGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRI 482
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
1940-2133 |
2.54e-06 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 52.71 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1940 GDIlELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI-------LRE- 2011
Cdd:PRK11176 340 GDI-EFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLrdytlasLRNq 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2012 IDEVHQNMGYcpqF-DSI-NELltgrehleLYAVLRGIPEKEVCDVAEWG-----IRKL--GLvkyaDKAAG----SYSG 2078
Cdd:PRK11176 419 VALVSQNVHL---FnDTIaNNI--------AYARTEQYSREQIEEAARMAyamdfINKMdnGL----DTVIGengvLLSG 483
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2079 GNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRAlwncIHSVIKE---GRSVVLTSH 2133
Cdd:PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERA----IQAALDElqkNRTSLVIAH 537
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
934-1098 |
2.70e-06 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 50.79 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAI-----RQSLGVCPQHNVLFSMlTVEEHIWFYgrl 1008
Cdd:cd03290 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAtrsrnRYSVAYAAQKPWLLNA-TVEENITFG--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1009 KGLSEQQVKGEIEQI-LQ-DTG-LPHKRSS----RTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPY-----ARR 1076
Cdd:cd03290 103 SPFNKQRYKAVTDACsLQpDIDlLPFGDQTeigeRGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHlsdhlMQE 182
|
170 180
....*....|....*....|..
gi 2048025527 1077 GIWDLLLKYRqgRTIILSTHHM 1098
Cdd:cd03290 183 GILKFLQDDK--RTLVLVTHKL 202
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
909-1094 |
2.91e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 52.63 E-value: 2.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTaYILGKDIRseLSAIRQSL-GVCP 987
Cdd:TIGR03719 325 AENLTKAF--GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT-IEIGETVK--LAYVDQSRdALDP 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNVL------FSMLTVEEHIW----FYGR--LKGlSEQQvkgeieqilqdtglphkrsSRTSALSGGMQRKLSVALAFV 1055
Cdd:TIGR03719 400 NKTVWeeisggLDIIKLGKREIpsraYVGRfnFKG-SDQQ-------------------KKVGQLSGGERNRVHLAKTLK 459
|
170 180 190
....*....|....*....|....*....|....*....
gi 2048025527 1056 GGSKVVILDEPTAGVDPYARRGIWDLLLKYrQGRTIILS 1094
Cdd:TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLNF-AGCAVVIS 497
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
927-1096 |
2.93e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 50.26 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 927 LTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDI----RSELSAIRQSLGvcpqhnvLFSMLTVEEHI 1002
Cdd:PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNInniaKPYCTYIGHNLG-------LKLEMTVFENL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1003 WFYGRLKGlSEQQVKGEIEQI-LQDTglphkRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL 1081
Cdd:PRK13541 92 KFWSEIYN-SAETLYAAIHYFkLHDL-----LDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNL 165
|
170
....*....|....*.
gi 2048025527 1082 L-LKYRQGRTIILSTH 1096
Cdd:PRK13541 166 IvMKANSGGIVLLSSH 181
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1935-2179 |
3.02e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 52.55 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1935 HGLGHGDILELRQLTKVFK--RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTgDTLVTSGEAFLAGKSILR-- 2010
Cdd:PRK10261 5 DELDARDVLAVENLNIAFMqeQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRrr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2011 -----EIDEVHQN-----------MGYCPQFDSINELLT-GREHLELYAVLRGIPEKEVCDVAEwgiRKLGLVKYADKAA 2073
Cdd:PRK10261 84 srqviELSEQSAAqmrhvrgadmaMIFQEPMTSLNPVFTvGEQIAESIRLHQGASREEAMVEAK---RMLDQVRIPEAQT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2074 --GSY----SGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMA 2146
Cdd:PRK10261 161 ilSRYphqlSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEmSMGVIFITHDMGVVAEIADRVL 240
|
250 260 270
....*....|....*....|....*....|...
gi 2048025527 2147 IMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGP 2179
Cdd:PRK10261 241 VMYQGEAVETGSVEQIFHAPQHPYTRALLAAVP 273
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1938-2182 |
3.07e-06 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 51.65 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1938 GHGDILELRQLTKVFKRKQK--PAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG---DTLVTSGEAFLAGKSIL--- 2009
Cdd:PRK09473 8 QADALLDVKDLRVTFSTPDGdvTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGllaANGRIGGSATFNGREILnlp 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2010 -REIDEVHQ---NMGYCPQFDSINELL-TGREHLELYAVLRGIPEKEVcdvAEWGIRKLGLVKY--ADKAAGSY----SG 2078
Cdd:PRK09473 88 eKELNKLRAeqiSMIFQDPMTSLNPYMrVGEQLMEVLMLHKGMSKAEA---FEESVRMLDAVKMpeARKRMKMYphefSG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2079 GNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKE-GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLG 2157
Cdd:PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREfNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244
|
250 260
....*....|....*....|....*
gi 2048025527 2158 SVQHLKNRFGDGYTIILRVAGPDPD 2182
Cdd:PRK09473 245 NARDVFYQPSHPYSIGLLNAVPRLD 269
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1967-2162 |
3.19e-06 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 50.74 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGK------------SILREIDE------VHQNMGycpqfdsi 2028
Cdd:PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQdhtttppsrrpvSMLFQENNlfshltVAQNIG-------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2029 nelltgrehLELYAVLRGIPE--KEVCDVAewgiRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGM 2106
Cdd:PRK10771 94 ---------LGLNPGLKLNAAqrEKLHAIA----RQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2107 DPKARRALWNCIHSVIKEGRSVVL-TSHSMEECEALCTRMAIMVNGRFRCLGSVQHL 2162
Cdd:PRK10771 161 DPALRQEMLTLVSQVCQERQLTLLmVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
1969-2139 |
3.46e-06 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 50.55 E-value: 3.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1969 PGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlreidEVHQNMGYCPQFDSINE--LLTGREHLELYAV-LR 2045
Cdd:cd03248 39 PGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI-----SQYEHKYLHSKVSLVGQepVLFARSLQDNIAYgLQ 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2046 GIPEKEVCDVAEWG-----IRKL--GLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALwNCI 2118
Cdd:cd03248 114 SCSFECVKEAAQKAhahsfISELasGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV-QQA 192
|
170 180
....*....|....*....|.
gi 2048025527 2119 HSVIKEGRSVVLTSHSMEECE 2139
Cdd:cd03248 193 LYDWPERRTVLVIAHRLSTVE 213
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1943-2166 |
4.91e-06 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 51.73 E-value: 4.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1943 LELRQLTKVFKRKQkpAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTG--DTLVTSGEaflagksilreideVHQNMG 2020
Cdd:TIGR03269 1 IEVKNLTKKFDGKE--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdQYEPTSGR--------------IIYHVA 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2021 YCPQ---------------------------FDSINELLTGR----------EHLELYA-------VLRGIPE-----KE 2051
Cdd:TIGR03269 65 LCEKcgyverpskvgepcpvcggtlepeevdFWNLSDKLRRRirkriaimlqRTFALYGddtvldnVLEALEEigyegKE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2052 VCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCI-HSVIKEGRSVVL 2130
Cdd:TIGR03269 145 AVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALeEAVKASGISMVL 224
|
250 260 270
....*....|....*....|....*....|....*.
gi 2048025527 2131 TSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRF 2166
Cdd:TIGR03269 225 TSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1942-2107 |
5.11e-06 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 51.61 E-value: 5.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKR--KQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTF----KMLTGDTLVTSGEAFLAGKSIL------ 2009
Cdd:COG4172 6 LLSVEDLSVAFGQggGTVEAVKGVSFDIAAGETLALVGESGSGKSVTAlsilRLLPDPAAHPSGSILFDGQDLLglsere 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2010 ------REIDEVHQN-MgycpqfDSINELLT-GR---EHLELYavlRGIPEKEVCD-VAEWgirkLGLVKYADKA--AGS 2075
Cdd:COG4172 86 lrrirgNRIAMIFQEpM------TSLNPLHTiGKqiaEVLRLH---RGLSGAAARArALEL----LERVGIPDPErrLDA 152
|
170 180 190
....*....|....*....|....*....|....*.
gi 2048025527 2076 Y----SGGNMRKLSTAMALIGAPPVVFLDEPTTGMD 2107
Cdd:COG4172 153 YphqlSGGQRQRVMIAMALANEPDLLIADEPTTALD 188
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1967-2107 |
6.11e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 51.35 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEaflagksILREIDevhqnMGYCPQFDSINELLTgrehleLYAVLRG 2046
Cdd:PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE-------VDPELK-----ISYKPQYIKPDYDGT------VEDLLRS 423
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2048025527 2047 IPEK--------EVcdvaewgIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMD 2107
Cdd:PRK13409 424 ITDDlgssyyksEI-------IKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
910-1071 |
6.95e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 51.66 E-value: 6.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 910 ENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRS-ELSAIRQSLGVCPQ 988
Cdd:PLN03130 1241 EDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKfGLMDLRKVLGIIPQ 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMlTVE-------EH----IWfygrlKGLSEQQVKGEIEQilQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGG 1057
Cdd:PLN03130 1321 APVLFSG-TVRfnldpfnEHndadLW-----ESLERAHLKDVIRR--NSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392
|
170
....*....|....
gi 2048025527 1058 SKVVILDEPTAGVD 1071
Cdd:PLN03130 1393 SKILVLDEATAAVD 1406
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1969-2133 |
8.75e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 50.94 E-value: 8.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1969 PGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAgKSIlreidevhqNMGYCPQFDSinELLTGREHlELYAVLRGIP 2048
Cdd:PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA-KGI---------KLGYFAQHQL--EFLRADES-PLQHLARLAP 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2049 EkevcdVAEWGIRK-LGLVKY-ADK---AAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALwncIHSVIK 2123
Cdd:PRK10636 404 Q-----ELEQKLRDyLGGFGFqGDKvteETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL---TEALID 475
|
170
....*....|
gi 2048025527 2124 EGRSVVLTSH 2133
Cdd:PRK10636 476 FEGALVVVSH 485
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
919-1087 |
9.03e-06 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 50.86 E-value: 9.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 919 GKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPpTSGTAYILGKDI----RSELSAIRQSLGVCPQ--HNVL 992
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLhnlnRRQLLPVRHRIQVVFQdpNSSL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 993 FSMLTVEEHIWFYGRL--KGLSEQQVKGEIEQILQDTGL-PHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAG 1069
Cdd:PRK15134 376 NPRLNVLQIIEEGLRVhqPTLSAAQREQQVIAVMEEVGLdPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455
|
170
....*....|....*...
gi 2048025527 1070 VDPYARRGIWDLLLKYRQ 1087
Cdd:PRK15134 456 LDKTVQAQILALLKSLQQ 473
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
923-1096 |
9.65e-06 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 50.11 E-value: 9.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPP---TSGTAYILGKDI----RSELSAIRQSlgvcpQHNVLFS- 994
Cdd:PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAngrIGGSATFNGREIlnlpEKELNKLRAE-----QISMIFQd 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 995 -MLTVEEHIWFYGRL-------KGLSEQQVKGEIEQILQDTGLPHKRSSRT---SALSGGMQRKLSVALAFVGGSKVVIL 1063
Cdd:PRK09473 106 pMTSLNPYMRVGEQLmevlmlhKGMSKAEAFEESVRMLDAVKMPEARKRMKmypHEFSGGMRQRVMIAMALLCRPKLLIA 185
|
170 180 190
....*....|....*....|....*....|....*
gi 2048025527 1064 DEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTH 1096
Cdd:PRK09473 186 DEPTTALDVTVQAQIMTLLneLKREFNTAIIMITH 220
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
941-1113 |
1.31e-05 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 47.53 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 941 GHNGAGKTTTMSILTGLFPPTSGTayilgkdirselsairqsLGVCPQHNVLFsmltVEEHIWFY-GRLKglseqqvkge 1019
Cdd:cd03223 34 GPSGTGKSSLFRALAGLWPWGSGR------------------IGMPEGEDLLF----LPQRPYLPlGTLR---------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1020 iEQILqdtgLPHKRssrtsALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLlkyRQGRTIILSTHHMD 1099
Cdd:cd03223 82 -EQLI----YPWDD-----VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL---KELGITVISVGHRP 148
|
170
....*....|....
gi 2048025527 1100 EADILGDRIAIISH 1113
Cdd:cd03223 149 SLWKFHDRVLDLDG 162
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
918-1094 |
1.47e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 50.17 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 918 HGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYiLGKDIRselsairqsLGVCPQHNVLFsmLT 997
Cdd:PRK10636 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG-LAKGIK---------LGYFAQHQLEF--LR 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 998 VEE----HiwfygrLKGLSEQqvkgEIEQILQDT----GLP-HKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTA 1068
Cdd:PRK10636 390 ADEsplqH------LARLAPQ----ELEQKLRDYlggfGFQgDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459
|
170 180
....*....|....*....|....*.
gi 2048025527 1069 GVDPYARRGIWDLLLKYrQGRTIILS 1094
Cdd:PRK10636 460 HLDLDMRQALTEALIDF-EGALVVVS 484
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
923-1121 |
1.60e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 50.24 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYI--------------LGKDIRSELSAIRQS-LGVCP 987
Cdd:PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCdkmllrrrsrqvieLSEQSAAQMRHVRGAdMAMIF 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 988 QHNV--LFSMLTVEEHIWFYGRL-KGLSEQQVKGEIEQILQDTGLPHKRS--SR-TSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:PRK10261 111 QEPMtsLNPVFTVGEQIAESIRLhQGASREEAMVEAKRMLDQVRIPEAQTilSRyPHQLSGGMRQRVMIAMALSCRPAVL 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1062 ILDEPTAGVDPYARRGIWDLL--LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK10261 191 IADEPTTALDVTIQAQILQLIkvLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
933-1100 |
2.95e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 49.12 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 933 EGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAyilgkDIRSELSAIRQSLGVCPQhnvlfsmLTVEEHIWFYGRLKGLS 1012
Cdd:PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKGSAALIAISSGLNGQ-------LTGIENIELKGLMMGLT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1013 EQQVKGEIEQILQ--DTGLPHKRSSRTsaLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR-QGR 1089
Cdd:PRK13545 117 KEKIKEIIPEIIEfaDIGKFIYQPVKT--YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKeQGK 194
|
170
....*....|.
gi 2048025527 1090 TIILSTHHMDE 1100
Cdd:PRK13545 195 TIFFISHSLSQ 205
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
2073-2136 |
4.20e-05 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 47.77 E-value: 4.20e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2048025527 2073 AGSYSGGNMRKLSTAMALIGAPP---VVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSME 2136
Cdd:pfam13304 234 AFELSDGTKRLLALLAALLSALPkggLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSPL 300
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
934-1071 |
5.26e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 48.95 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 934 GQITSFLGHNGAGKTTTMSILTG-----LFPPTSGTAY--ILGKDIRSELsaiRQSLGVCPQHNVLFSMLTVEEHIWFYG 1006
Cdd:TIGR00956 87 GELTVVLGRPGSGCSTLLKTIASntdgfHIGVEGVITYdgITPEEIKKHY---RGDVVYNAETDVHFPHLTVGETLDFAA 163
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 1007 RLK-------GLSEQQ-VKGEIEQILQDTGLPHKRSSRTS-----ALSGGMQRKLSVALAFVGGSKVVILDEPTAGVD 1071
Cdd:TIGR00956 164 RCKtpqnrpdGVSREEyAKHIADVYMATYGLSHTRNTKVGndfvrGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1970-2111 |
5.62e-05 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 47.02 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1970 GECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSIlreidevhqnmGYCPQFDSINELLTgrehleLYAVLRGIpE 2049
Cdd:cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-----------SYKPQYIKADYEGT------VRDLLSSI-T 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 2050 KEVCDVAEWG---IRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKAR 2111
Cdd:cd03237 87 KDFYTHPYFKteiAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
1965-2134 |
5.67e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 45.78 E-value: 5.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1965 VGIPPGECFGLLGVNGAGKTTtfkmLTGDTLVTSGEAFLAgksilreidevhqnmgycpqfdsinelltgrEHLELYAVL 2044
Cdd:cd03238 16 VSIPLNVLVVVTGVSGSGKST----LVNEGLYASGKARLI-------------------------------SFLPKFSRN 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2045 RGIPEKEVCDVAEWGIRKLGLvkyaDKAAGSYSGGNMRKLSTAMAL-IGAPPVVF-LDEPTTGMDPKARRALWNCIHSVI 2122
Cdd:cd03238 61 KLIFIDQLQFLIDVGLGYLTL----GQKLSTLSGGELQRVKLASELfSEPPGTLFiLDEPSTGLHQQDINQLLEVIKGLI 136
|
170
....*....|..
gi 2048025527 2123 KEGRSVVLTSHS 2134
Cdd:cd03238 137 DLGNTVILIEHN 148
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
909-1123 |
5.72e-05 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 48.26 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYRHGKKLAVDGLTLGfyEGQITSFLGHNGAGKTTTMSILTGL--FPPTSG-----------TAYI-------- 967
Cdd:TIGR03269 3 VKNLTKKFDGKEVLKNISFTIE--EGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGriiyhvalcekCGYVerpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 968 ----LGKDIRSE-----------LSAIRQSLGVCPQHN-VLFSMLTVEEHIwfygrLKGLSEQQVKGEIE-----QILQD 1026
Cdd:TIGR03269 81 pcpvCGGTLEPEevdfwnlsdklRRRIRKRIAIMLQRTfALYGDDTVLDNV-----LEALEEIGYEGKEAvgravDLIEM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1027 TGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK--YRQGRTIILSTHHMDEADIL 1104
Cdd:TIGR03269 156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEavKASGISMVLTSHWPEVIEDL 235
|
250
....*....|....*....
gi 2048025527 1105 GDRIAIISHGKLCCVGSSL 1123
Cdd:TIGR03269 236 SDKAIWLENGEIKEEGTPD 254
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
941-1116 |
5.91e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 48.41 E-value: 5.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 941 GHNGAGKTTTMSILTGLFPPTSGTaYILGKDIRseLSAIRQ--------------SLGVCPQ-------HNVLFSMLT-- 997
Cdd:PRK11147 36 GRNGAGKSTLMKILNGEVLLDDGR-IIYEQDLI--VARLQQdpprnvegtvydfvAEGIEEQaeylkryHDISHLVETdp 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 998 VEEHIwfyGRLKGLSEQ-------QVKGEIEQILQDTGL-PHKRssrTSALSGGMQRKLSVALAFVGGSKVVILDEPTAG 1069
Cdd:PRK11147 113 SEKNL---NELAKLQEQldhhnlwQLENRINEVLAQLGLdPDAA---LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNH 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2048025527 1070 VDPYARRGIWDLLLKYrQGrTIILSTHhmDEADI--LGDRIAIISHGKL 1116
Cdd:PRK11147 187 LDIETIEWLEGFLKTF-QG-SIIFISH--DRSFIrnMATRIVDLDRGKL 231
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
916-1071 |
7.63e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 48.40 E-value: 7.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 916 YRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTttmSILTGLF---PPTSGTAYILGKDI-RSELSAIRQSLGVCPQHNV 991
Cdd:TIGR00957 1294 YREDLDLVLRHINVTIHGGEKVGIVGRTGAGKS---SLTLGLFrinESAEGEIIIDGLNIaKIGLHDLRFKITIIPQDPV 1370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 992 LFS-MLTV---------EEHIWFygrlkGLSEQQVKGEIEQilQDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVV 1061
Cdd:TIGR00957 1371 LFSgSLRMnldpfsqysDEEVWW-----ALELAHLKTFVSA--LPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKIL 1443
|
170
....*....|
gi 2048025527 1062 ILDEPTAGVD 1071
Cdd:TIGR00957 1444 VLDEATAAVD 1453
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
933-1111 |
8.16e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 47.86 E-value: 8.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 933 EGQITSFLGHNGAGKTTTMSILTGLF---------PPT--------SGTA---YIlgKDIRS-ELSAIRQslgvcPQHNV 991
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELkpnlgdydeEPSwdevlkrfRGTElqdYF--KKLANgEIKVAHK-----PQYVD 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 992 LFSML---TVEEhiwfygRLKGLSEqqvKGEIEQILQDTGLPHKRSSRTSALSGG-MQRkLSVALAFVGGSKVVILDEPT 1067
Cdd:COG1245 171 LIPKVfkgTVRE------LLEKVDE---RGKLDELAEKLGLENILDRDISELSGGeLQR-VAIAAALLRDADFYFFDEPS 240
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2048025527 1068 AGVDPYAR----RGIWDLLlkyRQGRTIILSTHHMDEADILGDRIAII 1111
Cdd:COG1245 241 SYLDIYQRlnvaRLIRELA---EEGKYVLVVEHDLAILDYLADYVHIL 285
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
647-745 |
9.17e-05 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 47.00 E-value: 9.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 647 MPLFMTLAWMYSVAIILKSVVYEKEARLKETMRIMGLNNGILWFSWFIS----SLIPLLISAGLLVLLLKKGNLLPYSdp 722
Cdd:pfam12698 164 VGLILMIIILIGAAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGdflvGLLQLLIILLLLFGIGIPFGNLGLL-- 241
|
90 100
....*....|....*....|...
gi 2048025527 723 gVVFLFLGSFAVVTIMqcFLLST 745
Cdd:pfam12698 242 -LLLFLLYGLAYIALG--YLLGS 261
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
924-1121 |
9.50e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 48.02 E-value: 9.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 924 VDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGkdirselsairqSLGVCPQHnVLFSMLTVEEHIW 1003
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAYVPQQ-AWIQNDSLRENIL 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1004 FYgrlKGLSEQQVKGEIEQ--ILQD-----TGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARR 1076
Cdd:TIGR00957 721 FG---KALNEKYYQQVLEAcaLLPDleilpSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2048025527 1077 GIWDLLLKYR---QGRTIILSTHHMDEADILgDRIAIISHGKLCCVGS 1121
Cdd:TIGR00957 798 HIFEHVIGPEgvlKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGS 844
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
1022-1108 |
9.73e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 46.10 E-value: 9.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1022 QILQDTGLPHKRSSRTSA-LSGG-MQRklsVALAFVGGSKVV----ILDEPTAGVDPYARRGIWDLLLKYR-QGRTIILS 1094
Cdd:cd03270 119 GFLVDVGLGYLTLSRSAPtLSGGeAQR---IRLATQIGSGLTgvlyVLDEPSIGLHPRDNDRLIETLKRLRdLGNTVLVV 195
|
90
....*....|....*
gi 2048025527 1095 THhmDEADIL-GDRI 1108
Cdd:cd03270 196 EH--DEDTIRaADHV 208
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1942-2135 |
1.25e-04 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 46.18 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTkvFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTT---TF-KM--LTGDTLVTsGEAFLAGKSIL-REID- 2013
Cdd:COG1117 11 KIEVRNLN--VYYGDKQALKDINLDIPENKVTALIGPSGCGKSTllrCLnRMndLIPGARVE-GEILLDGEDIYdPDVDv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2014 -EVHQNMGYCPQ---------FDSInelltgrehleLYAV-LRGIPEKEVCD-VAEWGIRKLGL---VKyaDK---AAGS 2075
Cdd:COG1117 88 vELRRRVGMVFQkpnpfpksiYDNV-----------AYGLrLHGIKSKSELDeIVEESLRKAALwdeVK--DRlkkSALG 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2076 YSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSvIKEGRSVVLTSHSM 2135
Cdd:COG1117 155 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILE-LKKDYTIVIVTHNM 213
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1948-2180 |
1.26e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 47.41 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1948 LTKVFKRKQKPAVDRL--CVG-IPPGECFGLLGVNGAGKTTTFKMLTGDTlvtsgEAFLAGKSILREIDEVHQN------ 2018
Cdd:TIGR00956 62 FRKLKKFRDTKTFDILkpMDGlIKPGELTVVLGRPGSGCSTLLKTIASNT-----DGFHIGVEGVITYDGITPEeikkhy 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2019 ---MGYCPQFDSINELLTGREHLELYAVLRGiPEKEVCDV---------AEWGIRKLGLVKYADKAAGS-----YSGGNM 2081
Cdd:TIGR00956 137 rgdVVYNAETDVHFPHLTVGETLDFAARCKT-PQNRPDGVsreeyakhiADVYMATYGLSHTRNTKVGNdfvrgVSGGER 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2082 RKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTS--HSMEECEALCTRMAIMVNGRFRCLGSV 2159
Cdd:TIGR00956 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAiyQCSQDAYELFDKVIVLYEGYQIYFGPA 295
|
250 260
....*....|....*....|..
gi 2048025527 2160 QHLKNRFGD-GYTIILRVAGPD 2180
Cdd:TIGR00956 296 DKAKQYFEKmGFKCPDRQTTAD 317
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
909-1114 |
1.44e-04 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 46.38 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 909 IENLVKVYrHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSELSAIRQSLGVCpQ 988
Cdd:PRK11650 6 LQAVRKSY-DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF-Q 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 989 HNVLFSMLTVEEHIwFYG-RLKGLSEQQVKG---------EIEQILQdtglphkRSSRtsALSGGmQRKlSVAL--AFVG 1056
Cdd:PRK11650 84 NYALYPHMSVRENM-AYGlKIRGMPKAEIEErvaeaarilELEPLLD-------RKPR--ELSGG-QRQ-RVAMgrAIVR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2048025527 1057 GSKVVILDEPTAGVDpyAR-RGIWDLLLKYRQGR---TIILSTHHMDEADILGDRIAIISHG 1114
Cdd:PRK11650 152 EPAVFLFDEPLSNLD--AKlRVQMRLEIQRLHRRlktTSLYVTHDQVEAMTLADRVVVMNGG 211
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
920-1189 |
1.54e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 47.47 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 920 KKLAVDgLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGtayilgkdirsELSAIRqSLGVCPQHNVLFSMlTVE 999
Cdd:PTZ00243 673 KVLLRD-VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEG-----------RVWAER-SIAYVPQQAWIMNA-TVR 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1000 EHIWFY-----GRL-KGLSEQQVKGEIEQIlqDTGLPHKRSSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPY 1073
Cdd:PTZ00243 739 GNILFFdeedaARLaDAVRVSQLEADLAQL--GGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1074 -ARRGIWDLLLKYRQGRTIILSTHHMDEADiLGDRIAIISHGKLCCVGSSlylKNQLGTGYYLTLVKKEAEpslsscrns 1152
Cdd:PTZ00243 817 vGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSS---ADFMRTSLYATLAAELKE--------- 883
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2048025527 1153 sstvSFTKKEGEC-ASVSSSDA--GLGSEHESEAATIENG 1189
Cdd:PTZ00243 884 ----NKDSKEGDAdAEVAEVDAapGGAVDHEPPVAKQEGN 919
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
906-1086 |
2.13e-04 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 46.67 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 906 GVYIENLVKVYRHGKKLaVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTayiLGKDIRSELSAIRQ---- 981
Cdd:TIGR00954 451 GIKFENIPLVTPNGDVL-IESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGR---LTKPAKGKLFYVPQrpym 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGVCpQHNVLFSMlTVEEHIwfygrLKGLSEQqvkgEIEQILQDTGLPH--KRSSRTSA-------LSGGMQRKLSVAL 1052
Cdd:TIGR00954 527 TLGTL-RDQIIYPD-SSEDMK-----RRGLSDK----DLEQILDNVQLTHilEREGGWSAvqdwmdvLSGGEKQRIAMAR 595
|
170 180 190
....*....|....*....|....*....|....
gi 2048025527 1053 AFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYR 1086
Cdd:TIGR00954 596 LFYHKPQFAILDECTSAVSVDVEGYMYRLCREFG 629
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1939-2144 |
2.45e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 46.04 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1939 HGDILELRQLTKVFKrkQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSilreidevhqN 2018
Cdd:PRK15064 316 HRNALEVENLTKGFD--NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA----------N 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2019 MGYCPQ-----FDSINELL------TGREHLELyaVLRGIpekevcdvaewgirkLG-LVKYAD---KAAGSYSGGNMRK 2083
Cdd:PRK15064 384 IGYYAQdhaydFENDLTLFdwmsqwRQEGDDEQ--AVRGT---------------LGrLLFSQDdikKSVKVLSGGEKGR 446
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 2084 LSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVikEGrSVVLTSHSMEECEALCTR 2144
Cdd:PRK15064 447 MLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EG-TLIFVSHDREFVSSLATR 504
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1942-2005 |
2.49e-04 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 45.17 E-value: 2.49e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1942 ILELRQLTKVFK-------RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAG 2005
Cdd:PRK15112 4 LLEVRNLSKTFRyrtgwfrRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDD 74
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1019-1097 |
2.69e-04 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 45.95 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1019 EIEQILQDTGLPH--------KRSSRTsaLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRT 1090
Cdd:COG4178 459 ELREALEAVGLGHlaerldeeADWDQV--LSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLREELPGTT 536
|
....*..
gi 2048025527 1091 IILSTHH 1097
Cdd:COG4178 537 VISVGHR 543
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
1023-1114 |
2.84e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 46.36 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1023 ILQDTGLPHKRSSRTSA-LSGGMQRKlsVALAFVGGSKVV----ILDEPTAGVDPYARRGIWDLLLKYR-QGRTIILSTH 1096
Cdd:PRK00635 459 ILIDLGLPYLTPERALAtLSGGEQER--TALAKHLGAELIgityILDEPSIGLHPQDTHKLINVIKKLRdQGNTVLLVEH 536
|
90
....*....|....*....
gi 2048025527 1097 hmDEADI-LGDRIAIISHG 1114
Cdd:PRK00635 537 --DEQMIsLADRIIDIGPG 553
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
923-1096 |
4.96e-04 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 44.73 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 923 AVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFP-PTSGTAYIL---GKDIR------------SELSAIRQ----S 982
Cdd:PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDyPGRVMAEKLefnGQDLQrisekerrnlvgAEVAMIFQdpmtS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 983 LGVCpqHNVLFS-MLTVEEHiwfygrlKGLSEQQVKGEIEQILQDTGLPHKrSSRTSA----LSGGMQRKLSVALAFVGG 1057
Cdd:PRK11022 102 LNPC--YTVGFQiMEAIKVH-------QGGNKKTRRQRAIDLLNQVGIPDP-ASRLDVyphqLSGGMSQRVMIAMAIACR 171
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2048025527 1058 SKVVILDEPTAGVDPYARRGIWDLLLKYRQGR--TIILSTH 1096
Cdd:PRK11022 172 PKLLIADEPTTALDVTIQAQIIELLLELQQKEnmALVLITH 212
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2075-2137 |
5.07e-04 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 44.39 E-value: 5.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2075 SYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSvIKEGRSVVLTSHSMEE 2137
Cdd:PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE-LKEQYTIIIVTHNMQQ 212
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
1965-2133 |
6.07e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 42.73 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1965 VGIPPGECFGLLGVNGAGKTTTFkmltgdtlvtsgeaflagksilreidevhqnmgycpqfDSINELLTGREHLELYAVL 2044
Cdd:cd03227 16 VTFGEGSLTIITGPNGSGKSTIL--------------------------------------DAIGLALGGAQSATRRRSG 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2045 RGIPEKEVCDVAEWGIRKLGLvkyadkaagsySGGNMRKLSTAMALIGAP----PVVFLDEPTTGMDPKARRALWNCIHS 2120
Cdd:cd03227 58 VKAGCIVAAVSAELIFTRLQL-----------SGGEKELSALALILALASlkprPLYILDEIDRGLDPRDGQALAEAILE 126
|
170
....*....|...
gi 2048025527 2121 VIKEGRSVVLTSH 2133
Cdd:cd03227 127 HLVKGAQVIVITH 139
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1954-2159 |
6.79e-04 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 44.05 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1954 RKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDT--------LVTSGEAFLAGKSiLREID--EVHQNMGYCP 2023
Cdd:PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLtgggaprgARVTGDVTLNGEP-LAAIDapRLARLRAVLP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2024 QFD------SINEL-LTGREHlelYAVLRGIPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMAL------ 2090
Cdd:PRK13547 90 QAAqpafafSAREIvLLGRYP---HARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLaqlwpp 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2048025527 2091 ---IGAPPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLT-SHSMEECEALCTRMAIMVNGRFRCLGSV 2159
Cdd:PRK13547 167 hdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAiVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
1921-2182 |
6.87e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 45.32 E-value: 6.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1921 EEDEDVARERQRIVHGLGHGdiLELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGE 2000
Cdd:TIGR00957 617 EELEPDSIERRTIKPGEGNS--ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2001 AFLAGksilreidevhqNMGYCP-----QFDSINE-LLTGR-----------EHLELYAVLRGIPEKEVCDVAEWGIrkl 2063
Cdd:TIGR00957 695 VHMKG------------SVAYVPqqawiQNDSLREnILFGKalnekyyqqvlEACALLPDLEILPSGDRTEIGEKGV--- 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2064 glvkyadkaagSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCI---HSVIKeGRSVVLTSHSMEECEA 2140
Cdd:TIGR00957 760 -----------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVigpEGVLK-NKTRILVTHGISYLPQ 827
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2048025527 2141 LcTRMAIMVNGRFRCLGSVQHLKNRFGdGYTIILRVAGPDPD 2182
Cdd:TIGR00957 828 V-DVIIVMSGGKISEMGSYQELLQRDG-AFAEFLRTYAPDEQ 867
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1942-2107 |
8.82e-04 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 44.29 E-value: 8.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1942 ILELRQLTKVFKRKQ---------KPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGdtLV-TSGEAFLAGKSIL-- 2009
Cdd:COG4172 275 LLEARDLKVWFPIKRglfrrtvghVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLR--LIpSEGEIRFDGQDLDgl 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2010 ---------REIDEVHQNmgycPqFDSINELLT-GR---EHLELYAVlrGIPEKEVCDVAEWGIRKLGLvkyaDKAAGS- 2075
Cdd:COG4172 353 srralrplrRRMQVVFQD----P-FGSLSPRMTvGQiiaEGLRVHGP--GLSAAERRARVAEALEEVGL----DPAARHr 421
|
170 180 190
....*....|....*....|....*....|....*.
gi 2048025527 2076 ----YSGGNMRKLSTAMALIGAPPVVFLDEPTTGMD 2107
Cdd:COG4172 422 ypheFSGGQRQRIAIARALILEPKLLVLDEPTSALD 457
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
2075-2135 |
1.01e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.43 E-value: 1.01e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2048025527 2075 SYSGGNMRKLSTAMALIGA---PPVVFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSM 2135
Cdd:PRK00635 809 SLSGGEIQRLKLAYELLAPskkPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM 872
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
918-1116 |
1.47e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 43.62 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 918 HGKKLAVDGLTLGFYEGQITSFLGHNGAGKT-TTMSILT---GLFppTSGTAYILGK--DIRSELSAI----------RQ 981
Cdd:NF040905 270 HPERKVVDDVSLNVRRGEIVGIAGLMGAGRTeLAMSVFGrsyGRN--ISGTVFKDGKevDVSTVSDAIdaglayvtedRK 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 982 SLGvcpqhnvlfsmLTVEEHIWF---YGRLKGLSEQQVKGEIEQILQDTGLPHK---RSS----RTSALSGGMQRKlsVA 1051
Cdd:NF040905 348 GYG-----------LNLIDDIKRnitLANLGKVSRRGVIDENEEIKVAEEYRKKmniKTPsvfqKVGNLSGGNQQK--VV 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1052 LA---FVGgSKVVILDEPTAGVDPYARRGIWDLLLKY-RQGRTIILSTHHMDEadILG--DRIAIISHGKL 1116
Cdd:NF040905 415 LSkwlFTD-PDVLILDEPTRGIDVGAKYEIYTIINELaAEGKGVIVISSELPE--LLGmcDRIYVMNEGRI 482
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
1957-2133 |
1.81e-03 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 42.10 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1957 KPAVDRLCVGIPPGECFGLLGVNGAGKTTT----FKMLTgdtlVTSGEAFLAGKSIlREID--EVHQNMGYCPQfDSIne 2030
Cdd:cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLllalFRLVE----LSSGSILIDGVDI-SKIGlhDLRSRISIIPQ-DPV-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2031 LLTG--REHL---------ELYAVLRGIPEKEVCDvaewgirKLGLVKYADKAAG--SYSGGNMRKLSTAMALIGAPPVV 2097
Cdd:cd03244 89 LFSGtiRSNLdpfgeysdeELWQALERVGLKEFVE-------SLPGGLDTVVEEGgeNLSVGQRQLLCLARALLRKSKIL 161
|
170 180 190
....*....|....*....|....*....|....*....
gi 2048025527 2098 FLDEPTTGMDPkarrALWNCIHSVIKE---GRSVVLTSH 2133
Cdd:cd03244 162 VLDEATASVDP----ETDALIQKTIREafkDCTVLTIAH 196
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
891-1121 |
2.29e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 43.23 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 891 AGAVCIEeePAH--------LEPG-VYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT 961
Cdd:PTZ00243 1286 TGTVVIE--PASptsaaphpVQAGsLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC 1363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 962 SGTAYILGKDIRSE-LSAIRQSLGVCPQHNVLFS---MLTVE-------EHIWFYGRLKGLSEQqVKGEIEQIlqdtglp 1030
Cdd:PTZ00243 1364 GGEIRVNGREIGAYgLRELRRQFSMIPQDPVLFDgtvRQNVDpfleassAEVWAALELVGLRER-VASESEGI------- 1435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1031 hkrSSRTsaLSGGM-----QRKL-SVALAFVG-GSKVVILDEPTAGVDPYARRGIWDLLLKYRQGRTIILSTHHMDEADI 1103
Cdd:PTZ00243 1436 ---DSRV--LEGGSnysvgQRQLmCMARALLKkGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ 1510
|
250
....*....|....*...
gi 2048025527 1104 LgDRIAIISHGKLCCVGS 1121
Cdd:PTZ00243 1511 Y-DKIIVMDHGAVAEMGS 1527
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1967-2191 |
3.48e-03 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 42.32 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1967 IPPGECFGLLGVNGAGKTTTFKMLTGDTLVTSGEAFLAGKSI------LREIDEVHQNMGYCPQFDSINELLTGrehLEL 2040
Cdd:PRK11000 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMndvppaERGVGMVFQSYALYPHLSVAENMSFG---LKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2041 YAVLRGIPEKEVCDVAEwgirKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKAR---RALWNC 2117
Cdd:PRK11000 103 AGAKKEEINQRVNQVAE----VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRvqmRIEISR 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048025527 2118 IHSviKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL----KNRFGDGYTiilrvaGpdpdlSPVMKFIE 2191
Cdd:PRK11000 179 LHK--RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELyhypANRFVAGFI------G-----SPKMNFLP 243
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
910-964 |
3.77e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 42.41 E-value: 3.77e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2048025527 910 ENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGT 964
Cdd:PRK11819 328 ENLSKSF--GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT 380
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
907-1067 |
3.99e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 42.19 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 907 VYIENLVKVYrhGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTayilgkdIR-SELSAIrqslGV 985
Cdd:PRK15064 320 LEVENLTKGF--DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT-------VKwSENANI----GY 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 986 CPQ-HNVLFSM-LTVEEhiWFYG-RLKGLSEQQVKGEIEQIL--QDTGlphKRSSRTsaLSGGMQRKLSVALAFVGGSKV 1060
Cdd:PRK15064 387 YAQdHAYDFENdLTLFD--WMSQwRQEGDDEQAVRGTLGRLLfsQDDI---KKSVKV--LSGGEKGRMLFGKLMMQKPNV 459
|
....*..
gi 2048025527 1061 VILDEPT 1067
Cdd:PRK15064 460 LVMDEPT 466
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
936-1121 |
4.60e-03 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 41.78 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 936 ITSFLGHNGAGKTTTMSILTGLFPPTSGtaYI-LGKDIrseLSAIRQSLGVCP---------QHNVLFSMLTVEehiwfy 1005
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKG--RIvLNGRV---LFDAEKGICLPPekrrigyvfQDARLFPHYKVR------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1006 GRLK-GLSEQQvKGEIEQILQDTGLPHKRSSRTSALSGG-MQRklsVAL--AFVGGSKVVILDEPTAGVD-PYARRgiwd 1080
Cdd:PRK11144 95 GNLRyGMAKSM-VAQFDKIVALLGIEPLLDRYPGSLSGGeKQR---VAIgrALLTAPELLLMDEPLASLDlPRKRE---- 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2048025527 1081 lLLKY-----RQGRTIIL-STHHMDEADILGDRIAIISHGKLCCVGS 1121
Cdd:PRK11144 167 -LLPYlerlaREINIPILyVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
933-1128 |
6.69e-03 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 41.00 E-value: 6.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 933 EGQITSFLGHNGAGKTTTMSILTGLFPPTSGTayilgkdirselsaIRQS--LGVCPQhnvlFSML---TVEEHIWFygr 1007
Cdd:cd03291 62 KGEMLAITGSTGSGKTSLLMLILGELEPSEGK--------------IKHSgrISFSSQ----FSWImpgTIKENIIF--- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1008 lkGLS--EQQVKGEIE--QILQD-TGLPHKRSSRTS----ALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGI 1078
Cdd:cd03291 121 --GVSydEYRYKSVVKacQLEEDiTKFPEKDNTVLGeggiTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2048025527 1079 WD-LLLKYRQGRTIILSTHHMDEADIlGDRIAIISHGKLCCVGSSLYLKNQ 1128
Cdd:cd03291 199 FEsCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQSL 248
|
|
| ABC_SMC_barmotin |
cd03278 |
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a ... |
1018-1104 |
9.37e-03 |
|
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213245 [Multi-domain] Cd Length: 197 Bit Score: 39.76 E-value: 9.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 1018 GEIEQILQDTGlphKRSSRTSALSGGmQRKLsVALAF------VGGSKVVILDEPTAGVDPY-ARRGIwDLLLKYRQGRT 1090
Cdd:cd03278 95 GDVSEIIEAPG---KKVQRLSLLSGG-EKAL-TALALlfaifrVRPSPFCVLDEVDAALDDAnVERFA-RLLKEFSKETQ 168
|
90
....*....|....*..
gi 2048025527 1091 IILSTHH---MDEADIL 1104
Cdd:cd03278 169 FIVITHRkgtMEAADRL 185
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
2083-2180 |
9.84e-03 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 40.66 E-value: 9.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2048025527 2083 KLSTAMALIGAPPVVFLDEPTTGMDPKARRALWNCIHSVIK-EGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQH 2161
Cdd:COG4170 166 KVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQlQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQ 245
|
90
....*....|....*....
gi 2048025527 2162 LKNRFGDGYTIILRVAGPD 2180
Cdd:COG4170 246 ILKSPHHPYTKALLRSMPD 264
|
|
| |
