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Conserved domains on  [gi|2047919430|gb|KAG6591206|]
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hypothetical protein SDJN03_13552, partial [Cucurbita argyrosperma subsp. sororia]

Protein Classification

YtxH domain-containing protein( domain architecture ID 10578986)

YtxH domain-containing protein similar to Gallus gallus cell cycle progression protein 1 that may be involved in the regulation of Rho-mediated signaling pathways and in cell cycle regulation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 83-157 5.28e-03

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


:

Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 34.11  E-value: 5.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2047919430  83 VGGFVLGGLIVGTLGCVYAPQISKALagtdRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLR 157
Cdd:pfam12732   1 LLGLLIGAAIGAAAGLLLAPKSGKET----RKDLKDKAEDLKDKAKDLAEEAKEKAEDLKEKVKEKADELKEKVK 71
 
Name Accession Description Interval E-value
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 83-157 5.28e-03

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 34.11  E-value: 5.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2047919430  83 VGGFVLGGLIVGTLGCVYAPQISKALagtdRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLR 157
Cdd:pfam12732   1 LLGLLIGAAIGAAAGLLLAPKSGKET----RKDLKDKAEDLKDKAKDLAEEAKEKAEDLKEKVKEKADELKEKVK 71
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
77-158 5.96e-03

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 34.95  E-value: 5.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047919430  77 SNAGIFVGGFVLGGLIVGTLGCVYAPQISKALagtdRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQL 156
Cdd:COG4980     1 MKSKNFLLGLLVGAAVGAAAGLLFAPKSGKET----RKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEI 76


                  ..
gi 2047919430 157 RT 158
Cdd:COG4980    77 KE 78
PRK01544 PRK01544
bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) ...
 100-138 9.47e-03

bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed


Pssm-ID: 234958 [Multi-domain]  Cd Length: 506  Bit Score: 36.00  E-value: 9.47e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2047919430 100 YAPQISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVL 138
Cdd:PRK01544  313 YARRIGKSLSGVQQNLLDNELPKYLFSKEKLVNEKRKVF 351
 
Name Accession Description Interval E-value
YtxH pfam12732
YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are ...
 83-157 5.28e-03

YtxH-like protein; This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.


Pssm-ID: 432750 [Multi-domain]  Cd Length: 71  Bit Score: 34.11  E-value: 5.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2047919430  83 VGGFVLGGLIVGTLGCVYAPQISKALagtdRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQLR 157
Cdd:pfam12732   1 LLGLLIGAAIGAAAGLLLAPKSGKET----RKDLKDKAEDLKDKAKDLAEEAKEKAEDLKEKVKEKADELKEKVK 71
GvpP COG4980
Gas vesicle protein YhaH [General function prediction only];
77-158 5.96e-03

Gas vesicle protein YhaH [General function prediction only];


Pssm-ID: 444004 [Multi-domain]  Cd Length: 106  Bit Score: 34.95  E-value: 5.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2047919430  77 SNAGIFVGGFVLGGLIVGTLGCVYAPQISKALagtdRKELMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSSQL 156
Cdd:COG4980     1 MKSKNFLLGLLVGAAVGAAAGLLFAPKSGKET----RKKLKDKADDLKDKAEDLKDELKEKASELSEEAKEKLDELIEEI 76


                  ..
gi 2047919430 157 RT 158
Cdd:COG4980    77 KE 78
PRK01544 PRK01544
bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) ...
 100-138 9.47e-03

bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed


Pssm-ID: 234958 [Multi-domain]  Cd Length: 506  Bit Score: 36.00  E-value: 9.47e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2047919430 100 YAPQISKALAGTDRKELMRKLPKFIYDEEKALEKTRKVL 138
Cdd:PRK01544  313 YARRIGKSLSGVQQNLLDNELPKYLFSKEKLVNEKRKVF 351
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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