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Conserved domains on  [gi|2047440837|ref|YP_010095670|]
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tRNA amidotransferase [Aeromonas phage 50AhydR13PP]

Protein Classification

GatB/YqeY domain-containing protein( domain architecture ID 229989)

GatB/YqeY domain-containing protein similar to Pyrenophora tritici-repentis mitochondrial altered inheritance of mitochondria protein 41 (AIM41)

CATH:  1.10.10.410|1.10.1510.10
PubMed:  17284460

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GatB_Yqey super family cl21572
GatB domain; This domain is found in GatB. It is about 140 amino acid residues long. This ...
 33-97 4.64e-04

GatB domain; This domain is found in GatB. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB, which transamidates Glu-tRNA to Gln-tRNA.


The actual alignment was detected with superfamily member pfam09424:

Pssm-ID: 451316 [Multi-domain]  Cd Length: 143  Bit Score: 38.35  E-value: 4.64e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2047440837  33 QVQQTRDNSDAAVIKVINSLLKGIRERIAQ--KYNQYDLANAYREE-ALLSQFIPQAITDEQYNSVVN 97
Cdd:pfam09424  34 EVDERKELTDEEVLAVLAKEVKQRRESIEQfeKAGRQDLAEKERAEiAILEEYLPQQLSEEEIEALVD 101
 
Name Accession Description Interval E-value
YqeY pfam09424
Yqey-like protein; The function of this domain found in the YqeY protein is uncertain.
 33-97 4.64e-04

Yqey-like protein; The function of this domain found in the YqeY protein is uncertain.


Pssm-ID: 430602 [Multi-domain]  Cd Length: 143  Bit Score: 38.35  E-value: 4.64e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2047440837  33 QVQQTRDNSDAAVIKVINSLLKGIRERIAQ--KYNQYDLANAYREE-ALLSQFIPQAITDEQYNSVVN 97
Cdd:pfam09424  34 EVDERKELTDEEVLAVLAKEVKQRRESIEQfeKAGRQDLAEKERAEiAILEEYLPQQLSEEEIEALVD 101
 
Name Accession Description Interval E-value
YqeY pfam09424
Yqey-like protein; The function of this domain found in the YqeY protein is uncertain.
 33-97 4.64e-04

Yqey-like protein; The function of this domain found in the YqeY protein is uncertain.


Pssm-ID: 430602 [Multi-domain]  Cd Length: 143  Bit Score: 38.35  E-value: 4.64e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2047440837  33 QVQQTRDNSDAAVIKVINSLLKGIRERIAQ--KYNQYDLANAYREE-ALLSQFIPQAITDEQYNSVVN 97
Cdd:pfam09424  34 EVDERKELTDEEVLAVLAKEVKQRRESIEQfeKAGRQDLAEKERAEiAILEEYLPQQLSEEEIEALVD 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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