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Conserved domains on  [gi|2046389442]
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Chain k, Mediator of RNA polymerase II transcription subunit 11

Protein Classification

mediator of RNA polymerase II transcription subunit 11( domain architecture ID 10563237)

mediator of RNA polymerase II transcription subunit 11 is a component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Med11 pfam10280
Mediator complex protein; Mediator is a large, modular protein complex that is conserved from ...
 8-115 8.60e-19

Mediator complex protein; Mediator is a large, modular protein complex that is conserved from yeast to human and conveys regulatory signals from DNA-binding transcription factors to RNA polymerase II. Not only are the polypeptides conserved but the structural organization is also largely conserved. One or two subunits are either fungal or vertebral specific but Med11 is one of the subunits that is conserved from fungi to humans. Med11 appears to be necessary for the full and successful assembly of the core head sub-region.


:

Pssm-ID: 463042  Cd Length: 119  Bit Score: 75.36  E-value: 8.60e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046389442   8 NERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTA-------SVQHVEAELSAQIRYLTQVAT-GQPH 79
Cdd:pfam10280   1 AERIQQLNEIDKDIVSLLQSASTAIQALSNSPSPSESLEARKEAFKAatsqfysTLSSVDVRLRRQIKALEEAGIiNIGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2046389442  80 EGSSYSSRKDCQMAlkrvdYARLKLSDVARTCEQML 115
Cdd:pfam10280  81 EPSGYGGLGNLDIG-----WLNSRLDKVGRDKEAEL 111
 
Name Accession Description Interval E-value
Med11 pfam10280
Mediator complex protein; Mediator is a large, modular protein complex that is conserved from ...
 8-115 8.60e-19

Mediator complex protein; Mediator is a large, modular protein complex that is conserved from yeast to human and conveys regulatory signals from DNA-binding transcription factors to RNA polymerase II. Not only are the polypeptides conserved but the structural organization is also largely conserved. One or two subunits are either fungal or vertebral specific but Med11 is one of the subunits that is conserved from fungi to humans. Med11 appears to be necessary for the full and successful assembly of the core head sub-region.


Pssm-ID: 463042  Cd Length: 119  Bit Score: 75.36  E-value: 8.60e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046389442   8 NERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTA-------SVQHVEAELSAQIRYLTQVAT-GQPH 79
Cdd:pfam10280   1 AERIQQLNEIDKDIVSLLQSASTAIQALSNSPSPSESLEARKEAFKAatsqfysTLSSVDVRLRRQIKALEEAGIiNIGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2046389442  80 EGSSYSSRKDCQMAlkrvdYARLKLSDVARTCEQML 115
Cdd:pfam10280  81 EPSGYGGLGNLDIG-----WLNSRLDKVGRDKEAEL 111
 
Name Accession Description Interval E-value
Med11 pfam10280
Mediator complex protein; Mediator is a large, modular protein complex that is conserved from ...
 8-115 8.60e-19

Mediator complex protein; Mediator is a large, modular protein complex that is conserved from yeast to human and conveys regulatory signals from DNA-binding transcription factors to RNA polymerase II. Not only are the polypeptides conserved but the structural organization is also largely conserved. One or two subunits are either fungal or vertebral specific but Med11 is one of the subunits that is conserved from fungi to humans. Med11 appears to be necessary for the full and successful assembly of the core head sub-region.


Pssm-ID: 463042  Cd Length: 119  Bit Score: 75.36  E-value: 8.60e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2046389442   8 NERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTA-------SVQHVEAELSAQIRYLTQVAT-GQPH 79
Cdd:pfam10280   1 AERIQQLNEIDKDIVSLLQSASTAIQALSNSPSPSESLEARKEAFKAatsqfysTLSSVDVRLRRQIKALEEAGIiNIGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2046389442  80 EGSSYSSRKDCQMAlkrvdYARLKLSDVARTCEQML 115
Cdd:pfam10280  81 EPSGYGGLGNLDIG-----WLNSRLDKVGRDKEAEL 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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