Conserved domains on
[gi|2046215808|gb|QVX29724|]
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hypothetical protein RF2 (plastid) [Parkinsonia aculeata]
Protein Classification
Ycf2( domain architecture ID 11414145)
Ycf2 is a DUF825 and AAA (ATPases Associated with various cellular Activities) domain-containing protein of unknown function
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||||||||||||||||||||||||||||
| ycf2 | CHL00206 | Ycf2; Provisional |
1-2278 | 0e+00 | ||||||||||||||||||||||||||||||
Ycf2; Provisional : Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 4275.16 E-value: 0e+00
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| Name | Accession | Description | Interval | E-value | ||||||||||||||||||||||||||||||
| ycf2 | CHL00206 | Ycf2; Provisional |
1-2278 | 0e+00 | ||||||||||||||||||||||||||||||
Ycf2; Provisional Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 4275.16 E-value: 0e+00
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| DUF825 | pfam05695 | Plant protein of unknown function (DUF825); This family consists of several plant proteins ... |
1-1480 | 0e+00 | ||||||||||||||||||||||||||||||
Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown. Pssm-ID: 283375 Cd Length: 1486 Bit Score: 2969.48 E-value: 0e+00
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| RecA-like_Ycf2 | cd19505 | ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ... |
1616-1800 | 9.47e-78 | ||||||||||||||||||||||||||||||
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410913 [Multi-domain] Cd Length: 161 Bit Score: 254.22 E-value: 9.47e-78
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| RPT1 | COG1222 | ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
1621-1852 | 4.87e-06 | ||||||||||||||||||||||||||||||
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 51.16 E-value: 4.87e-06
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| Name | Accession | Description | Interval | E-value | ||||||||||||||||||||||||||||||
| ycf2 | CHL00206 | Ycf2; Provisional |
1-2278 | 0e+00 | ||||||||||||||||||||||||||||||
Ycf2; Provisional Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 4275.16 E-value: 0e+00
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| DUF825 | pfam05695 | Plant protein of unknown function (DUF825); This family consists of several plant proteins ... |
1-1480 | 0e+00 | ||||||||||||||||||||||||||||||
Plant protein of unknown function (DUF825); This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown. Pssm-ID: 283375 Cd Length: 1486 Bit Score: 2969.48 E-value: 0e+00
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| RecA-like_Ycf2 | cd19505 | ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; ... |
1616-1800 | 9.47e-78 | ||||||||||||||||||||||||||||||
ATPase domain of plant YCF2; Ycf2 is a chloroplast ATPase which has an essential function; however, its function remains unclear. The gene encoding YCF2 is the largest known plastid gene in angiosperms and has been used to predict phylogenetic relationships. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410913 [Multi-domain] Cd Length: 161 Bit Score: 254.22 E-value: 9.47e-78
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| RecA-like_protease | cd19481 | proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
1617-1800 | 5.25e-12 | ||||||||||||||||||||||||||||||
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 65.77 E-value: 5.25e-12
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| AAA | pfam00004 | ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
1630-1789 | 9.61e-08 | ||||||||||||||||||||||||||||||
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 52.98 E-value: 9.61e-08
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| RecA-like_CDC48_r2-like | cd19511 | second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
1614-1798 | 4.45e-07 | ||||||||||||||||||||||||||||||
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 51.90 E-value: 4.45e-07
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| RPT1 | COG1222 | ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
1621-1852 | 4.87e-06 | ||||||||||||||||||||||||||||||
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 51.16 E-value: 4.87e-06
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| RecA-like_VCP_r2 | cd19529 | second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
1621-1800 | 2.64e-05 | ||||||||||||||||||||||||||||||
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 46.72 E-value: 2.64e-05
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| RecA-like_PAN_like | cd19502 | proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
1621-1800 | 8.70e-04 | ||||||||||||||||||||||||||||||
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 42.32 E-value: 8.70e-04
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| RecA-like_FtsH | cd19501 | ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
1621-1800 | 1.03e-03 | ||||||||||||||||||||||||||||||
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 42.22 E-value: 1.03e-03
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| RecA-like_CDC48_NLV2_r1-like | cd19503 | first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
1610-1800 | 1.08e-03 | ||||||||||||||||||||||||||||||
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 41.89 E-value: 1.08e-03
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| PTZ00454 | PTZ00454 | 26S protease regulatory subunit 6B-like protein; Provisional |
1621-1669 | 4.00e-03 | ||||||||||||||||||||||||||||||
26S protease regulatory subunit 6B-like protein; Provisional Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 42.06 E-value: 4.00e-03
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| Blast search parameters | ||||
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