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Conserved domains on  [gi|2042729239|ref|XP_041566590|]
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sperm-associated antigen 7 [Drosophila elegans]

Protein Classification

R3H_sperm-antigen domain-containing protein( domain architecture ID 10119027)

R3H_sperm-antigen domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
R3H_sperm-antigen cd02636
R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. ...
 47-106 1.28e-22

R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


:

Pssm-ID: 100065  Cd Length: 61  Bit Score: 87.77  E-value: 1.28e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2042729239  47 RKYVDERMGRFAKDD-RQCIEFQPLDKVHRSVIHEIAENGGFIAMSFGREDVDRHSVVYKK 106
Cdd:cd02636     1 RKSMEKEVSKFIKDSvRTREKFQPMDKVERSIVHDVAEVAGLTSFSFGEDEVDRYVMIFKK 61
 
Name Accession Description Interval E-value
R3H_sperm-antigen cd02636
R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. ...
 47-106 1.28e-22

R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100065  Cd Length: 61  Bit Score: 87.77  E-value: 1.28e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2042729239  47 RKYVDERMGRFAKDD-RQCIEFQPLDKVHRSVIHEIAENGGFIAMSFGREDVDRHSVVYKK 106
Cdd:cd02636     1 RKSMEKEVSKFIKDSvRTREKFQPMDKVERSIVHDVAEVAGLTSFSFGEDEVDRYVMIFKK 61
R3H pfam01424
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ...
 45-105 7.16e-10

R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.


Pssm-ID: 460206  Cd Length: 60  Bit Score: 53.65  E-value: 7.16e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2042729239  45 RFRKYVDERMGRFAKDDRQCIEFQPLDKVHRSVIHEIAENGGFIAMSFGREDvDRHSVVYK 105
Cdd:pfam01424   1 EFLEQLAEKLAEFVKDTGKSLELPPMSSYERRIIHELAQKYGLESESEGEEP-NRRVVVYK 60
R3H smart00393
Putative single-stranded nucleic acids-binding domain;
37-106 5.15e-06

Putative single-stranded nucleic acids-binding domain;


Pssm-ID: 214647  Cd Length: 79  Bit Score: 43.44  E-value: 5.15e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2042729239   37 NKQKEELLRFRkyvdERMGRFAKDDRQCIEFQPLDKVHRSVIHEIAENGGFIAMSFGREDvDRHSVVYKK 106
Cdd:smart00393  15 PRRREELIELE----LEIARFVKSTKESVELPPMNSYERKIVHELAEKYGLESESFGEGP-KRRVVISKK 79
 
Name Accession Description Interval E-value
R3H_sperm-antigen cd02636
R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. ...
 47-106 1.28e-22

R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100065  Cd Length: 61  Bit Score: 87.77  E-value: 1.28e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2042729239  47 RKYVDERMGRFAKDD-RQCIEFQPLDKVHRSVIHEIAENGGFIAMSFGREDVDRHSVVYKK 106
Cdd:cd02636     1 RKSMEKEVSKFIKDSvRTREKFQPMDKVERSIVHDVAEVAGLTSFSFGEDEVDRYVMIFKK 61
R3H pfam01424
R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most ...
 45-105 7.16e-10

R3H domain; The name of the R3H domain comes from the characteriztic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA.


Pssm-ID: 460206  Cd Length: 60  Bit Score: 53.65  E-value: 7.16e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2042729239  45 RFRKYVDERMGRFAKDDRQCIEFQPLDKVHRSVIHEIAENGGFIAMSFGREDvDRHSVVYK 105
Cdd:pfam01424   1 EFLEQLAEKLAEFVKDTGKSLELPPMSSYERRIIHELAQKYGLESESEGEEP-NRRVVVYK 60
R3H cd02325
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most ...
 47-105 3.64e-08

R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100064  Cd Length: 59  Bit Score: 48.76  E-value: 3.64e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2042729239  47 RKYVDERMGRFAKDD-RQCIEFQPLDKVHRSVIHEIAENGGFIAMSFGREDvDRHSVVYK 105
Cdd:cd02325     1 REEREEELEAFAKDAaGKSLELPPMNSYERKLIHDLAEYYGLKSESEGEGP-NRRVVITK 59
R3H smart00393
Putative single-stranded nucleic acids-binding domain;
37-106 5.15e-06

Putative single-stranded nucleic acids-binding domain;


Pssm-ID: 214647  Cd Length: 79  Bit Score: 43.44  E-value: 5.15e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2042729239   37 NKQKEELLRFRkyvdERMGRFAKDDRQCIEFQPLDKVHRSVIHEIAENGGFIAMSFGREDvDRHSVVYKK 106
Cdd:smart00393  15 PRRREELIELE----LEIARFVKSTKESVELPPMNSYERKIVHELAEKYGLESESFGEGP-KRRVVISKK 79
R3H_G-patch cd02646
R3H domain of a group of fungal and plant proteins with unknown function, who also contain a ...
 57-105 3.54e-04

R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.


Pssm-ID: 100075  Cd Length: 58  Bit Score: 37.55  E-value: 3.54e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2042729239  57 FAKDDRQCIEFQPLDKVHRSVIHEIAENGGFIAMSFGREDvDRHSVVYK 105
Cdd:cd02646    11 FLLDSRDSLSFPPMDKHGRKTIHKLANCYNLKSKSRGKGK-KRFVTVTK 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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