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Conserved domains on  [gi|20377869|gb|AAM20869|]
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cytochrome b, partial (mitochondrion) [Cylindraspis inepta]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-101 1.52e-68

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 209.37  E-value: 1.52e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100
                 ....*....|....*....|.
gi 20377869   81 RNMHANGASIFFMCIYLHIAR 101
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGR 101
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-101 1.52e-68

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 209.37  E-value: 1.52e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100
                 ....*....|....*....|.
gi 20377869   81 RNMHANGASIFFMCIYLHIAR 101
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGR 101
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-101 1.04e-39

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 130.18  E-value: 1.04e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869  10 PMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90
                ....*....|..
gi 20377869  90 IFFMCIYLHIAR 101
Cdd:cd00284  81 MFFLMLYLHIFR 92
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-101 1.22e-34

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 117.10  E-value: 1.22e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    19 FIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80


                  ...
gi 20377869    99 IAR 101
Cdd:pfam00033  81 IFR 83
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-101 1.36e-34

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 121.82  E-value: 1.36e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869  12 IKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIF 91
Cdd:COG1290  20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                        90
                ....*....|
gi 20377869  92 FMCIYLHIAR 101
Cdd:COG1290 100 FAAVYLHMFR 109
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-101 1.52e-68

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 209.37  E-value: 1.52e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100
                 ....*....|....*....|.
gi 20377869   81 RNMHANGASIFFMCIYLHIAR 101
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGR 101
CYTB MTH00100
cytochrome b; Provisional
 3-101 6.90e-64

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 197.55  E-value: 6.90e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    3 TNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRN 82
Cdd:MTH00100   2 TNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                         90
                 ....*....|....*....
gi 20377869   83 MHANGASIFFMCIYLHIAR 101
Cdd:MTH00100  82 LHANGASMFFICLFLHVGR 100
CYTB MTH00131
cytochrome b; Provisional
 3-101 2.92e-63

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 196.03  E-value: 2.92e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    3 TNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRN 82
Cdd:MTH00131   2 ASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRN 81

                         90
                 ....*....|....*....
gi 20377869   83 MHANGASIFFMCIYLHIAR 101
Cdd:MTH00131  82 LHANGASFFFICIYLHIGR 100
CYTB MTH00074
cytochrome b; Provisional
 1-101 2.77e-62

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 193.36  E-value: 2.77e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100
                 ....*....|....*....|.
gi 20377869   81 RNMHANGASIFFMCIYLHIAR 101
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGR 101
CYTB MTH00191
cytochrome b; Provisional
 5-101 5.98e-61

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 189.36  E-value: 5.98e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    5 LRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90
                 ....*....|....*..
gi 20377869   85 ANGASIFFMCIYLHIAR 101
Cdd:MTH00191  81 ANGASFFFICIYLHIGR 97
CYTB MTH00034
cytochrome b; Validated
 5-101 8.15e-57

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 179.13  E-value: 8.15e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    5 LRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90
                 ....*....|....*..
gi 20377869   85 ANGASIFFMCIYLHIAR 101
Cdd:MTH00034  84 ANGASLFFICLYFHIGR 100
CYTB MTH00145
cytochrome b; Provisional
 1-101 2.55e-56

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 178.18  E-value: 2.55e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100
                 ....*....|....*....|.
gi 20377869   81 RNMHANGASIFFMCIYLHIAR 101
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGR 101
CYTB MTH00156
cytochrome b; Provisional
 12-101 4.91e-56

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 176.51  E-value: 4.91e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869   12 IKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90
                 ....*....|
gi 20377869   92 FMCIYLHIAR 101
Cdd:MTH00156  81 FICIYLHIGR 90
CYTB MTH00016
cytochrome b; Validated
 1-101 2.29e-55

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 175.64  E-value: 2.29e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100
                 ....*....|....*....|.
gi 20377869   81 RNMHANGASIFFMCIYLHIAR 101
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGR 101
CYTB MTH00224
cytochrome b; Provisional
 1-101 6.02e-49

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 158.93  E-value: 6.02e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100
                 ....*....|....*....|.
gi 20377869   81 RNMHANGASIFFMCIYLHIAR 101
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGR 101
CYTB MTH00053
cytochrome b; Provisional
 1-101 2.37e-47

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 154.86  E-value: 2.37e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100
                 ....*....|....*....|.
gi 20377869   81 RNMHANGASIFFMCIYLHIAR 101
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGR 101
CYTB MTH00022
cytochrome b; Validated
 5-101 3.38e-45

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 149.47  E-value: 3.38e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    5 LRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90
                 ....*....|....*..
gi 20377869   85 ANGASIFFMCIYLHIAR 101
Cdd:MTH00022  83 ANGASLFFLCLYIHIGR 99
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-101 1.04e-39

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 130.18  E-value: 1.04e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869  10 PMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90
                ....*....|..
gi 20377869  90 IFFMCIYLHIAR 101
Cdd:cd00284  81 MFFLMLYLHIFR 92
CYTB MTH00033
cytochrome b; Provisional
 5-101 3.51e-35

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 123.12  E-value: 3.51e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    5 LRKTHPMIKIinNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00033   3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90
                 ....*....|....*..
gi 20377869   85 ANGASIFFMCIYLHIAR 101
Cdd:MTH00033  81 ANGASLFFICVYCHIGR 97
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-101 1.22e-34

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 117.10  E-value: 1.22e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869    19 FIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80


                  ...
gi 20377869    99 IAR 101
Cdd:pfam00033  81 IFR 83
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-101 1.36e-34

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 121.82  E-value: 1.36e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869  12 IKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIF 91
Cdd:COG1290  20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                        90
                ....*....|
gi 20377869  92 FMCIYLHIAR 101
Cdd:COG1290 100 FAAVYLHMFR 109
CYTB MTH00086
cytochrome b; Provisional
 13-99 1.05e-26

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 100.40  E-value: 1.05e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869   13 KIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80


                 ....*..
gi 20377869   93 MCIYLHI 99
Cdd:MTH00086  81 IFLYLHI 87
CYTB MTH00046
cytochrome b; Validated
 11-101 8.24e-15

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 68.09  E-value: 8.24e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20377869   11 MIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASI 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90
                 ....*....|.
gi 20377869   91 FFMCIYLHIAR 101
Cdd:MTH00046  81 LFILLFIHMGR 91
petB CHL00070
cytochrome b6
 25-101 2.48e-13

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 62.82  E-value: 2.48e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 20377869   25 PSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIAR 101
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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