|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-317 |
3.55e-80 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 246.66 E-value: 3.55e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSKNPliieNNIFQTLICS 80
Cdd:MTH00160 20 ISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF----NNISSMLINS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNiFISSIIVLSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00160 96 SLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIGGLNQTSLRKILAYS 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 161 SINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00160 175 SINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLP 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2033712734 241 KWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLFSYTELKLNqFTSPGSALFLTVLTLTSLSTLGLPFSS 317
Cdd:MTH00160 255 KWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWN-LKKKKNKFSLILNFLSFISLFGLILSS 330
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
5-264 |
5.59e-36 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 131.28 E-value: 5.59e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 5 STSWLGVWMGLEINLLSFIPLMT-NTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLS-------------KNPLIIE 70
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTgtlsfdelskaltGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 71 NNIFQTLICSALLLKMGAAPFHFWFPATMEGLSWKN-CFILMTWQKIAPLMLLAYV-------IEMNIFISSIIVLSVLI 142
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIRRSllylpssPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 143 GSLGGLNQSSLRKLMAYSSINHLGWMISAM----VIGENLWEMYFMIYTLLSLSIVLVFN-----IHHIYHMNQNFLTMN 213
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2033712734 214 HDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMT 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
3-313 |
2.26e-23 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 99.81 E-value: 2.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 3 ATSTSWLGVWMGLEINLLSFIPL-MTNTKNTMSTEASLKYFLVQALASAMLLFSIILMY----TLSKNPL---IIENNIF 74
Cdd:COG1007 119 ASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYgatgSLNLAGIaaaLAAGGAN 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 75 QT-------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNIFISSIIVL 138
Cdd:COG1007 199 SPllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADWQLLLAVLAVL 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 139 SVLIGSLGGLNQSSLRKLMAYSSINHLGWMISAMVIGENLWE----MYFMIYTLLSLSIVLVfnIHHIYHMNQNFLTMN- 213
Cdd:COG1007 279 SMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLGAFAV--ILLLSRKGGEAEEIEd 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 214 ------HDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLFSYTElk 287
Cdd:COG1007 357 laglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEE-- 434
|
330 340
....*....|....*....|....*.
gi 2033712734 288 lnQFTSPGSALFLTVLTLTSLSTLGL 313
Cdd:COG1007 435 --EAPISAPPGLRVALVIAALLVLLL 458
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
1-305 |
8.54e-21 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 92.32 E-value: 8.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMT-NTKNTMSTEASLKYFLVQALASAMLLFSIILMY-----------TLSKNPLI 68
Cdd:TIGR01770 117 LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLFLSNGM 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 69 IENNIFQT---LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIA---------PLMLLAYVIEMNIFISSII 136
Cdd:TIGR01770 197 LNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGFSEAWQIFLAIIA 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 137 VLSVLIGSLGGLNQSSLRKLMAYSSINHLGW-MISAMVIGENLWE---MYFMIYTLLSLSIVLVF---------NIHHIY 203
Cdd:TIGR01770 277 FLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLsllrsykdeWIEYIS 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 204 HMNQNFltmNHDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFL--- 280
Cdd:TIGR01770 357 DFAGLF---KTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFdkp 433
|
330 340
....*....|....*....|....*....
gi 2033712734 281 ----FSYTELKLNQFTSPGSALFLTVLTL 305
Cdd:TIGR01770 434 erriPSNPQSKAQSLLLSISALFILFLGL 462
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-317 |
3.55e-80 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 246.66 E-value: 3.55e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSKNPliieNNIFQTLICS 80
Cdd:MTH00160 20 ISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLF----NNISSMLINS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNiFISSIIVLSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00160 96 SLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAIGGLNQTSLRKILAYS 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 161 SINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00160 175 SINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLP 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2033712734 241 KWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLFSYTELKLNqFTSPGSALFLTVLTLTSLSTLGLPFSS 317
Cdd:MTH00160 255 KWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWN-LKKKKNKFSLILNFLSFISLFGLILSS 330
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-316 |
7.32e-62 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 200.07 E-value: 7.32e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSII--LMYTLSKNPLIIENNIFQTLI 78
Cdd:MTH00105 19 ITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYSGQWTITKLTNPTASTLM 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---AYVIEMNIFISSIIvLSVLIGSLGGLNQSSLRK 155
Cdd:MTH00105 99 TIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTLAI-LSILIGGWGGLNQTQLRK 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 156 LMAYSSINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFLLLLSLGGLPPF 235
Cdd:MTH00105 178 ILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 236 LGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTF---LAFLFSYTELKLN-QFTSPGSALFLTvlTLTSLSTL 311
Cdd:MTH00105 258 TGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYstsLTMFPSTNNMKMKwQFENTKPMTLLP--TLIILSTM 335
|
....*
gi 2033712734 312 GLPFS 316
Cdd:MTH00105 336 LLPLT 340
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-278 |
4.83e-59 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 192.73 E-value: 4.83e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIIL--MYTLSKNPLIIENNIFQTLI 78
Cdd:MTH00112 19 ITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTnaWNTGQWDITQLTNPTSCTLL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLaYVIEMNI---FISSIIVLSVLIGSLGGLNQSSLRK 155
Cdd:MTH00112 99 TLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL-LMTSNSLnptLLLTLAILSTLIGGWGGLNQTQLRK 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 156 LMAYSSINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFLLLLSLGGLPPF 235
Cdd:MTH00112 178 IMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPL 257
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2033712734 236 LGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLA 278
Cdd:MTH00112 258 TGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYIS 300
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-317 |
1.41e-57 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 189.02 E-value: 1.41e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIIL--MYTLSKNPLIIENNIFQTLI 78
Cdd:MTH00200 19 LTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLnaWTSGQWGISEMLGPLSETLI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEM--NIFISSIIVLSVLIGSLGGLNQSSLRKL 156
Cdd:MTH00200 99 LLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPAlnSNILLLLGLLSVLVGGWGGLNQTQLRKI 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 157 MAYSSINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFLLLLSLGGLPPFL 236
Cdd:MTH00200 179 LAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLT 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 237 GFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFL-AFLFSYTELKLNQFTSPGSALFLTVLTLTSLSTLGLPF 315
Cdd:MTH00200 259 GFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLtLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLSILGLPL 338
|
..
gi 2033712734 316 SS 317
Cdd:MTH00200 339 TP 340
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-313 |
5.01e-57 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 187.83 E-value: 5.01e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSKNPLIIE--NNIFQTLI 78
Cdd:MTH00041 19 IVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGplNTLSSIII 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEmNIFISSIIV---LSVLIGSLGGLNQSSLRK 155
Cdd:MTH00041 99 TLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISN-LLNSNILILcgiLSVLVGGWGGLNQTQTRK 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 156 LMAYSSINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFLLLLSLGGLPPF 235
Cdd:MTH00041 178 ILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 236 LGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLFSYTELKLNQF----TSPGSALFLTVLTLTSLSTL 311
Cdd:MTH00041 258 TGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFswrnSGNITVYGVILSILSSISIL 337
|
..
gi 2033712734 312 GL 313
Cdd:MTH00041 338 GL 339
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
4-291 |
2.78e-56 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 185.09 E-value: 2.78e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 4 TSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSKNPLIIennifqTLICSALL 83
Cdd:MTH00144 22 SSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM------SLLLLGLC 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 84 LKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISSIIV---LSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00144 96 LKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVisvLSALVGSIGGLNQTQVRALLAYS 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 161 SINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMnQNFLTMNHDRVTKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00144 176 SISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCS 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2033712734 241 KWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLFSYTELKLNQF 291
Cdd:MTH00144 255 KLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSS 305
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-277 |
8.53e-55 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 181.66 E-value: 8.53e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSKNPLIIE--NNIFQTLI 78
Cdd:MTH00070 19 ITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNmqTPLPTIML 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 79 CSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYV---IEMNIFIsSIIVLSVLIGSLGGLNQSSLRK 155
Cdd:MTH00070 99 TIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIshlLNSNLLI-IMGLLSTLIGGWGGLNQTQLRK 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 156 LMAYSSINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFLLLLSLGGLPPF 235
Cdd:MTH00070 178 IMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPT 257
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2033712734 236 LGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFL 277
Cdd:MTH00070 258 TGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-308 |
4.51e-53 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 176.89 E-value: 4.51e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSKnpliIENNIFQTLICS 80
Cdd:MTH00011 21 MALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPS----LLKNITALMLLV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNI--FISSIIVLSVLIGSLGGLNQSSLRKLMA 158
Cdd:MTH00011 97 SLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNIlpMMTSMAAMSALAGGLGGMNQTQLRPLLA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 159 YSSINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFLLLLSLGGLPPFLGF 238
Cdd:MTH00011 177 YSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGF 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 239 FPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLFSYTELKLNQFTSPGSALFLTVLTLTSL 308
Cdd:MTH00011 257 MPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISMCTLSL 326
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-276 |
1.77e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 173.07 E-value: 1.77e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLS--------KNPLIIenn 72
Cdd:MTH00135 19 LTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTgqwdiqqmSHPLPT--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 73 ifqTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISSII-VLSVLIGSLGGLNQS 151
Cdd:MTH00135 96 ---TMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLgLTSTLVGGWGGLNQT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 152 SLRKLMAYSSINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQnfLTMNHdrvTKSCMFLLLLSLGG 231
Cdd:MTH00135 173 QLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINT--LATSW---TKAPALTALTPLIL 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2033712734 232 L-----PPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTF 276
Cdd:MTH00135 248 LslgglPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSY 297
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
1-304 |
1.72e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 169.85 E-value: 1.72e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLsknplIIENNIFQTLICS 80
Cdd:MTH00197 13 FSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN-----LYLSLLSVVLVIL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 81 ALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISSIIVLSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:MTH00197 88 GLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYS 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 161 SINHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFLLLLSLGGLPPFLGFFP 240
Cdd:MTH00197 168 SIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFL 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2033712734 241 KWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLFSYTELKLNQFTSPGSALFLTVLT 304
Cdd:MTH00197 248 KWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLM 311
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
5-264 |
5.59e-36 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 131.28 E-value: 5.59e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 5 STSWLGVWMGLEINLLSFIPLMT-NTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLS-------------KNPLIIE 70
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTgtlsfdelskaltGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 71 NNIFQTLICSALLLKMGAAPFHFWFPATMEGLSWKN-CFILMTWQKIAPLMLLAYV-------IEMNIFISSIIVLSVLI 142
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIRRSllylpssPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 143 GSLGGLNQSSLRKLMAYSSINHLGWMISAM----VIGENLWEMYFMIYTLLSLSIVLVFN-----IHHIYHMNQNFLTMN 213
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2033712734 214 HDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMT 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
4-274 |
1.19e-25 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 106.25 E-value: 1.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 4 TSTSWLGVWMGLEINLLS-FIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMYTLSKNPLIIENN------IFQT 76
Cdd:MTH00199 115 SSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINsiltgdVGKI 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 77 LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISSIIVLSVLIGSLGGLNQSSLRKL 156
Cdd:MTH00199 195 LITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALNQTKIKRL 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 157 MAYSSINHLGWMISAMVIGEN-------LWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHDrVTKSCMFLLLLSL 229
Cdd:MTH00199 275 LAYSGIGHMGFILFGVAIGSFesiqaslIYMIIYVIMSICSFSIILSLKLTKGLIVEVSGLSRKNP-VIALTLALTFLSI 353
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2033712734 230 GGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRL 274
Cdd:MTH00199 354 AGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
5-274 |
1.06e-23 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 99.72 E-value: 1.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 5 STSWLGVWMGLEINLLSFIPLMTNTKNTM-STEASLKYFLVQALASAMLLFSIILMYTLS---------------KNPLI 68
Cdd:MTH00196 12 SSNWLSVYLAIELQTLSLFILIAQNRGSGySAEAGLKYFVLGALSSGLFLFGCALLCGTTgglhlsyinlvlnsgQSFSS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 69 IENNIFQTLICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISSIIVLSVLIGSLGGL 148
Cdd:MTH00196 92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLFVGAIGAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 149 NQSSLRKLMAYSSINHLGWMISAMVIG--ENLWE--MYFMIYTLLSL---SIVLVFNIHHIYHMNQNFLTMNHDRVTKSc 221
Cdd:MTH00196 172 NQTKIKRLLAYSGIGHMGFVLWGIEIGsfESIQAslVYLFIYIIMSIcvfSIILALNVYKNLIIEFSGLSRRLPILAIT- 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2033712734 222 MFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRL 274
Cdd:MTH00196 251 LALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
3-313 |
2.26e-23 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 99.81 E-value: 2.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 3 ATSTSWLGVWMGLEINLLSFIPL-MTNTKNTMSTEASLKYFLVQALASAMLLFSIILMY----TLSKNPL---IIENNIF 74
Cdd:COG1007 119 ASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYgatgSLNLAGIaaaLAAGGAN 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 75 QT-------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNIFISSIIVL 138
Cdd:COG1007 199 SPllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGLAADWQLLLAVLAVL 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 139 SVLIGSLGGLNQSSLRKLMAYSSINHLGWMISAMVIGENLWE----MYFMIYTLLSLSIVLVfnIHHIYHMNQNFLTMN- 213
Cdd:COG1007 279 SMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNLGAFAV--ILLLSRKGGEAEEIEd 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 214 ------HDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLFSYTElk 287
Cdd:COG1007 357 laglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMYFDEPEE-- 434
|
330 340
....*....|....*....|....*.
gi 2033712734 288 lnQFTSPGSALFLTVLTLTSLSTLGL 313
Cdd:COG1007 435 --EAPISAPPGLRVALVIAALLVLLL 458
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
1-313 |
2.91e-23 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 99.51 E-value: 2.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEI-NLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMY--TLSKNPLIIENNIFQT- 76
Cdd:PRK05777 118 VMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYgaTGSLSFAGIAKALADGs 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 77 -----------LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNIFISSII 136
Cdd:PRK05777 198 gnsllllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGLSEDWQQVLAIIA 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 137 VLSVLIGSLGGLNQSSLRKLMAYSSINHLGWMISAMVIGENLWE----MYFMIYTLLSL---SIVLV-----FNIHHIYH 204
Cdd:PRK05777 278 IASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsavlFYLLAYLFMTLgafGVISLlrrkgGEAESISD 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 205 MNQNFltmNHDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLfsyT 284
Cdd:PRK05777 358 FAGLS---KRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLMYF---D 431
|
330 340
....*....|....*....|....*....
gi 2033712734 285 ELKLNQFTSPGSALFLTVLTLTSLSTLGL 313
Cdd:PRK05777 432 EPPRDAPVNWPLSAGGAVLSVSALLVLVL 460
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
1-305 |
8.54e-21 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 92.32 E-value: 8.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 1 IAATSTSWLGVWMGLEINLLSFIPLMT-NTKNTMSTEASLKYFLVQALASAMLLFSIILMY-----------TLSKNPLI 68
Cdd:TIGR01770 117 LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLFLSNGM 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 69 IENNIFQT---LICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIA---------PLMLLAYVIEMNIFISSII 136
Cdd:TIGR01770 197 LNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGFSEAWQIFLAIIA 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 137 VLSVLIGSLGGLNQSSLRKLMAYSSINHLGW-MISAMVIGENLWE---MYFMIYTLLSLSIVLVF---------NIHHIY 203
Cdd:TIGR01770 277 FLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLsllrsykdeWIEYIS 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 204 HMNQNFltmNHDRVTKSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFL--- 280
Cdd:TIGR01770 357 DFAGLF---KTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFdkp 433
|
330 340
....*....|....*....|....*....
gi 2033712734 281 ----FSYTELKLNQFTSPGSALFLTVLTL 305
Cdd:TIGR01770 434 erriPSNPQSKAQSLLLSISALFILFLGL 462
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
12-274 |
7.22e-14 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 71.72 E-value: 7.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 12 WMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMY----TLSKNPL---IIENNIFQTLICSALLL 84
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYgatgTLNMADLaarLAELDPGLLLAAFALLL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 85 -----KMGAAPFHFWFP-----------ATMEGLSWKNCF--ILMTWQKIAPLMLLAYViemNIFISSIIVLSVLIGSLG 146
Cdd:COG0651 213 vgfgiKAALFPLHFWLPdaypaapspvsALLSGLLTKVGVyaILRVLTLLFGADPALFL---GTLLLVLGLLTMLVGALG 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 147 GLNQSSLRKLMAYSSINHLGWMISAMVIGENL---WEMYFMIY-----TLLSLSIVLVFNIHHIYHMNQNFLTMNHDRVT 218
Cdd:COG0651 290 ALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNhalakALLFLAAGAIERATGTRDLDKLGGLGKRMPLT 369
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2033712734 219 KSCMFLLLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRL 274
Cdd:COG0651 370 AAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
5-274 |
2.81e-13 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 70.27 E-value: 2.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 5 STSWLGVWMGLEINLLSFIPLMTNTKNTMST---------EASLKYFLVQALASAMLLFSIILMYTLSKNPLIIENNIFQ 75
Cdd:MTH00198 207 SANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEGMLGTILSA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 76 TL----------------ICSALLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFISSIIVLS 139
Cdd:MTH00198 287 TLettnielrqgslgylfITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSVAIIS 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 140 VLIGSLGGLNQSSLRKLMAYSSINHLGWMISAMVIG-----ENLWE--MYFMIYTLLSLSIVLV---FNIHHIYHMNQNF 209
Cdd:MTH00198 367 LVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWTyaVTYLVSALASFTVICTleeFGTRTPTSRQRDG 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 210 LTMNHDRVTKSCMFLLL---------------LSLGGLPPFLGFFPKWLIIQTMTDMN-------YQFIIIVMVIMTLIT 267
Cdd:MTH00198 447 SFGNYNLVRRLVDLTILsrgqpyiafslaivfLSLAGIPPLLGFLGKWFILVGSIKIAfssslsiYYLVALFAIICTCIS 526
|
....*..
gi 2033712734 268 LFYYLRL 274
Cdd:MTH00198 527 AFYYIRI 533
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
15-279 |
5.05e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 63.36 E-value: 5.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 15 LEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLFSIILMY----TLSKNPL---IIENNIFQT---LICSALLL 84
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYgvtgTLNMADLagaLAENPTVVTafgFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 85 KMGAAPFHFWFPATM-EGLSWKNCFILMTWQKIA-----PLMLLAYVIE------MNIFISSIIVLSVLIGSLGGLNQSS 152
Cdd:PRK08375 215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAvyaliRIYFTVFGGDfrfalgLGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 153 LRKLMAYSSINHLGWMISAMVIGENLWEMYFMIYTL--------LSLSIVLVFNIHHIYHMNQNFLTMNHDRVTKSCMFL 224
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalmkgaLFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAV 374
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2033712734 225 LLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAF 279
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAF 429
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
36-280 |
8.08e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 59.73 E-value: 8.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 36 EASLKYFLVQALASAMLLFSIILMY-------------TLSKNPLIIeNNIFQTLICSALLLKMGAAPFHFWFP-ATMEG 101
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALLYgqygtlnmaylavKMSENPTVV-AKIALALFIAGLAMKSGAVPVHMWLPdAYPAA 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 102 LSWKNCFILMTwqKIAPLMLLAYVI-----------EMNIFISSIIVLSVLIGSLGGLNQSSLRKLMAYSSINHLGWMIS 170
Cdd:PRK08376 251 PSSISAMLLVI--KQAGLYALARVLfsiygpainlaTVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 171 AMVIG-ENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLT------------MNH----DRVTKSCMFLLL---LSLG 230
Cdd:PRK08376 329 GLGVGlAALGDPAMASYGEIALAGGIYHIVNHALYKALLFLTagaviyetgtrnLNElgglARTMPKTTIAFLigaAAIV 408
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2033712734 231 GLPPFLGFFPKWLIIQTMTDMNyQFIIIVMVIMTLITLFYYLRLTFLAFL 280
Cdd:PRK08376 409 GLPPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTAFF 457
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
34-175 |
7.32e-08 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 53.52 E-value: 7.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 34 STEASLKYFLVQALASAMLLFSIILMYTLSKNPLIIEnNIFQTLICSALLL--------------KMGAAPFHFWFPATM 99
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSSLLYGLSGGSTQLS-AIALALITSPSLGlalalvfviagiafKISAVPFHQWTPDVY 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 100 EGLSWKNCFILMTWQKIAPLMLL---------AYVIEMNIFISSIIVLSVLIGSLGGLNQSSLRKLMAYSSINHLGWMIS 170
Cdd:PRK02504 238 EGSPTPVVAFLSVGSKAAGFALAirllvtafpSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMI 317
|
....*
gi 2033712734 171 AMVIG 175
Cdd:PRK02504 318 GLVAG 322
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
30-176 |
9.19e-08 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 53.08 E-value: 9.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 30 KNTMSTEASLKYFLVQALASAMLLFSIILMYTLSKNPL--------IIENNIFQTLICSALLL--------KMGAAPFHF 93
Cdd:CHL00049 156 KDVRSNEATMKYLLMGGASSSILVYGFSWLYGLSGGEIelqeivngLINTQMYNSPGISIALIfitvgigfKLSLAPFHQ 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 94 WFPATMEGLSWKNCFILMTWQKIAPLMLLAYVI---------EMNIFISSIIVLSVLIGSLGGLNQSSLRKLMAYSSINH 164
Cdd:CHL00049 236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFdipfyfssnEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315
|
170
....*....|..
gi 2033712734 165 LGWMISAMVIGE 176
Cdd:CHL00049 316 IGYVIIGIIVGD 327
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
34-280 |
3.17e-06 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 48.61 E-value: 3.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 34 STEASLKYFLVQALASAMLLFSIILMYT----------LSKNPLIIENNIFqTLICsaLLLKMGAA------PFHFWFPA 97
Cdd:COG1009 160 ARRAARKAFLVTRVGDLGLLLGILLLGAiagtlnfselLAAAPTILSSPLL-TLIL--LLLLLGAFgksaqfPLHFWLPD 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 98 TME-----------------GLswkncFILMtwqKIAPLMLLAYVIemNIFISSIIVLSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:COG1009 237 AMEgptpvsallhaatmvkaGV-----YLLA---RLSPLFALSPVW--LTVVAIIGAITALFAALIALAQTDIKRVLAYS 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 161 SINHLGWMISAMVIGeNLWEMYFMIYT------LLSL---SIVLVFNIHHIYHMNQNFLTMnhdRVTKSCMFLLLLSLGG 231
Cdd:COG1009 307 TVSQLGYMFLALGVG-AYVAALFHLLThaffkaLLFLgagSVIHATGTRDIRKMGGLRKKM---PITAITFLIGALSLAG 382
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2033712734 232 LPPFLGFFPKWLIIQTM--TDMNYQFIIIVMVIMTLITLFYYLRLTFLAFL 280
Cdd:COG1009 383 IPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFF 433
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
36-280 |
1.56e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 46.12 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 36 EASLKYFLVQALASAMLLFSIILMY--------------------TLSKNP---LIIENNIFQTLICSALLLKMGAAPFH 92
Cdd:PRK12667 164 EAAIKYALIGAVGTTLYFLALAFLYatfgtlnmadlsakirglsfPLTGGLagnPPLALGVALALALWAFTIKAAIFPNH 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 93 FWFP-----------ATMEGLSWK---NCFILMTWQKIAPLMLLAYVIEMnifISSIIVL----SVLIGSLGGLNQSSLR 154
Cdd:PRK12667 244 FWLPdahpaapspvsAMLSGLVVNvgaYAIIRFLYTIFGISPSLIDFRAA---LSPILIIlgavSAIIGALMMVVQKDVK 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 155 KLMAYSSINHLGWMISAMVIGENLWEMYFMIYT--------LLSLSIVLVfnIHHIYHMNQNFL--TMNHDRVTKSCMFL 224
Cdd:PRK12667 321 RLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksLLFLASGVF--IHAAGTRDIDELagLGRKMPIASFAFLI 398
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2033712734 225 LLLSLGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFL 280
Cdd:PRK12667 399 GALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFF 454
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
82-291 |
1.80e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 42.55 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 82 LLLKMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLAYVIEMNIFIssIIVLSVLIGSLGGLNQSSLRKLMAYSS 161
Cdd:MTH00091 67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFF--LLLFGLLICFFQMFLLKSYKNLLILSS 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 162 INHLGWMISAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQnfltmnhdrvtkscmFLLLLSLGGLPPFLGFFPK 241
Cdd:MTH00091 145 TESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVS---------------WETLLVFMNLPFSVTFFVK 209
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2033712734 242 WLIIQTMTDMNYQFIIIVMVIMTLITLFYYLRLTFLAFLFSYTELKLNQF 291
Cdd:MTH00091 210 IFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKG 259
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
77-279 |
3.92e-04 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 41.95 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 77 LICSALLLKMGAAPFHFWFPATMEGLSWKNCFI---LMTWQKIAPLM----LLAYVIEMNIFISSIIVLSVLIGSLGGLN 149
Cdd:PRK12650 213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLrfspVFHDVAVWNWLLIIVGMITALMGAVFAVQ 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 150 QSSLRKLMAYSSINHLGWMISAMVIGENLWEMYFMIYTLL-----SLSIVLVFNIHH------IYHMNQNFLTMNhdrVT 218
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAhalfkSSLFMLIGVVDHqagtrdIRRLGSLWRRMP---FT 369
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033712734 219 KSCMFLLLLSLGGLPPFLGFFPKWLIIQTM--TDMNYQFIIIVMVIMTLITLF---YYLRLTFLAF 279
Cdd:PRK12650 370 FVSVTIAALSMAAVPPLFGFVSKEGMLTAFleAPGGNAGVVLLLVGAALGAVFtfaYSARLVLGAF 435
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
37-166 |
4.88e-04 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 41.61 E-value: 4.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 37 ASLKYFLVQALASAMLLFSIILMYTLSKN-----PLIIENNI---FQTLICSALLL----KMGAAPFHFWFPATMEGlsw 104
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGAltfdiAELAAAPLpltAQLLLFLAFFIafavKVPMFPFHTWLPDAHVE--- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 105 kncfilmtwqkiAPL---MLLAYV---------------------IEMNIFISSIIVLSVLIGSLGGLNQSSLRKLMAYS 160
Cdd:COG1008 239 ------------APTagsVLLAGVllkmggygllrfalplfpeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYS 306
|
....*.
gi 2033712734 161 SINHLG 166
Cdd:COG1008 307 SVSHMG 312
|
|
| ND5 |
MTH00020 |
NADH dehydrogenase subunit 5; Reviewed |
76-311 |
1.61e-03 |
|
NADH dehydrogenase subunit 5; Reviewed
Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 40.06 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 76 TLICSALLL----KMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLL-------AYVIEMNIFISSIIVLSVLIGS 144
Cdd:MTH00020 210 TLICLFLFIgavgKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLirssplfEQAPLALIIVTIVGSLTVFFAA 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 145 LGGLNQSSLRKLMAYSSINHLGWMISAMVIGENLWEMYFMI-----YTLLSLS----IVLVFNIHHIYHMN--QNFLTMN 213
Cdd:MTH00020 290 TVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMnhaffKALLFLSagsvIHALSDEQDMRKMGglISFLPLT 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 214 HdrvtksCMFLLLLSLGGLPPFL-GFFPKWLIIQTMTDMNY-QFIIIVMVIMTLITLFYYLRLTFLAFLfSYTELKLNQF 291
Cdd:MTH00020 370 Y------IFFLIGSLSLMGFPYLtGFYSKDLILELAFGQYYlIFAYWLGCFSALLTAFYSIRLIYLTFL-SNTNLKKAVF 442
|
250 260
....*....|....*....|..
gi 2033712734 292 TS--PGSALFLTVLTLTSLSTL 311
Cdd:MTH00020 443 FHlhEGDWNLLLPLGILALGSI 464
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
3-312 |
2.69e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 39.41 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 3 ATSTSWLGVWMGLEINLLSFIPLMTNTKNTMSTEASLKYFLVQALASAMLLF-SIILMYTLSKNPLIIENNIFQT----- 76
Cdd:PRK06589 133 ALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpAVILIYTKTGNLDFVSGGLFSKnqsii 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 77 --LICSALLLKMGAAPFHFWFPATM-----------------EGLSWKNCFILMTWQkiapLMLLAYVIEMNIFISSIIV 137
Cdd:PRK06589 213 llLMFIYGIAKTAIFPVHSWLPAAMvahypvsallhavivvkTGLFCIYKILLYIFG----LSYLQRIFAEFNWLIFIPI 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 138 LSVLIGSLGGLNQSSLRKLMAYSSINHLGWMI--SAMVIGENLWEMYFMIYTLLSLSIVLVFNIHHIYHMNQNFLTMNHD 215
Cdd:PRK06589 289 VSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLH 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 216 RVTKSCMFLLLLSLGG------LPPFLGFFPKWLIIQTMTDMNYQ----FIIIVMVIMTLITLFYYLRLTFLAFLFSYTE 285
Cdd:PRK06589 369 GTSKSFPLISFIISISslsligIPIFSGFISKFLILLAASEQNQPwlsiIVMLVVIASSILSALYLLKILSSIYKPSLSE 448
|
330 340
....*....|....*....|....*..
gi 2033712734 286 lKLNQFTSPGSALFLTVLTLTSLSTLG 312
Cdd:PRK06589 449 -NSFITKSLPYLMQISVITCCCALTLF 474
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
34-178 |
3.86e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 38.82 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 34 STEASLKYFLVQALASAMLLFSIILMYT-------------LSKNPLIIENNIFQTLICSALLLKMGAAPFHFWFPATME 100
Cdd:PRK08668 145 SRKASLKYFVLSAIGAYAMLYAIFLIYAktgtfdfadisqgLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYS 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 101 ------------GLSWKNCFILMTWQKIAPLMLLAY-------VIEMNIFISSIIVLSVLIGSLGGLNQSSLRKLMAYSS 161
Cdd:PRK08668 225 eapqsfsavlsgQLSKLGAYGFLLVLYVLPGTKLFSefgtyrgVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSS 304
|
170
....*....|....*..
gi 2033712734 162 INHLGWMISAMVIGENL 178
Cdd:PRK08668 305 VANGGYILVGLGLGTSL 321
|
|
| ND5 |
MTH00207 |
NADH dehydrogenase subunit 5; Provisional |
12-275 |
3.89e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 38.98 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 12 WMGLeiNLLSFIpLMTNTKNTMSTEASLKYFLVQALASAMLLFSIilMYTLSKNPLIIEN------NIFQTL-ICSALLL 84
Cdd:MTH00207 117 WDGL--GLVSFI-LVIYYQNPKSLGAGMITALTNRIGDVMLLLSI--GWTLNQGHWSITNmwqtdmNNYIALsIMIAAMT 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 85 KMGAAPFHFWFPATMEGLSWKNCFILMTWQKIAPLMLLayvIEMNIFISS----------IIVLSVLIGSLGGLNQSSLR 154
Cdd:MTH00207 192 KSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLL---IRFYPFLSStywfnpalllTASLTMLMAGLSAMTECDMK 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033712734 155 KLMAYSSINHLGWMISAMVIGENLWEMYFMIYTLL--SLSIVLVFNIHHIYHMNQNFLTM----NHDRVTKSCMFLLLLS 228
Cdd:MTH00207 269 KIIALSTLSQLGVMMASLGLGMPKLALFHLITHALfkALLFVCAGSLIHSHHHSQDLRTMgnltNQMPLTTSCLLIANLA 348
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 2033712734 229 LGGLPPFLGFFPKWLIIQTMTDMNYQFIIIVMVIM-TLITLFYYLRLT 275
Cdd:MTH00207 349 LCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLaTALTAAYSTRFT 396
|
|
| |
