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Conserved domains on  [gi|2029232126|gb|QUE29679|]
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Ycf54 (chloroplast) [Erythrotrichia foliiformis]

Protein Classification

Ycf54 domain-containing protein( domain architecture ID 10566415)

Ycf54 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf54 pfam10674
Protein of unknown function (DUF2488); This protein is conserved in the green lineage and ...
 3-90 2.17e-37

Protein of unknown function (DUF2488); This protein is conserved in the green lineage and located in the chloroplast.


:

Pssm-ID: 431427  Cd Length: 91  Bit Score: 121.17  E-value: 2.17e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2029232126   3 NYYFAIATKRFLTEEEPLEEILRERISYYKSNNKVIDFWFIETPDFFNTPQLQKIIGERDQPFAAVVSTNRTFINWIKLR 82
Cdd:pfam10674   1 TYYFVVASAKFLLEEEPLEEVLRERRRNYKERNKEIDFWLVKEPAFLEAPELAEIKAKCPQPAAAIVSTDAQFITWLKLR 80


                  ....*...
gi 2029232126  83 IGYVATGK 90
Cdd:pfam10674  81 LEYVLTGE 88
 
Name Accession Description Interval E-value
Ycf54 pfam10674
Protein of unknown function (DUF2488); This protein is conserved in the green lineage and ...
 3-90 2.17e-37

Protein of unknown function (DUF2488); This protein is conserved in the green lineage and located in the chloroplast.


Pssm-ID: 431427  Cd Length: 91  Bit Score: 121.17  E-value: 2.17e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2029232126   3 NYYFAIATKRFLTEEEPLEEILRERISYYKSNNKVIDFWFIETPDFFNTPQLQKIIGERDQPFAAVVSTNRTFINWIKLR 82
Cdd:pfam10674   1 TYYFVVASAKFLLEEEPLEEVLRERRRNYKERNKEIDFWLVKEPAFLEAPELAEIKAKCPQPAAAIVSTDAQFITWLKLR 80


                  ....*...
gi 2029232126  83 IGYVATGK 90
Cdd:pfam10674  81 LEYVLTGE 88
 
Name Accession Description Interval E-value
Ycf54 pfam10674
Protein of unknown function (DUF2488); This protein is conserved in the green lineage and ...
 3-90 2.17e-37

Protein of unknown function (DUF2488); This protein is conserved in the green lineage and located in the chloroplast.


Pssm-ID: 431427  Cd Length: 91  Bit Score: 121.17  E-value: 2.17e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2029232126   3 NYYFAIATKRFLTEEEPLEEILRERISYYKSNNKVIDFWFIETPDFFNTPQLQKIIGERDQPFAAVVSTNRTFINWIKLR 82
Cdd:pfam10674   1 TYYFVVASAKFLLEEEPLEEVLRERRRNYKERNKEIDFWLVKEPAFLEAPELAEIKAKCPQPAAAIVSTDAQFITWLKLR 80


                  ....*...
gi 2029232126  83 IGYVATGK 90
Cdd:pfam10674  81 LEYVLTGE 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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