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Conserved domains on  [gi|2028691200|gb|QUA69677|]
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cytochrome B, partial (mitochondrion) [Acomys percivali]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 2-139 2.25e-109

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 315.04  E-value: 2.25e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 2-139 2.25e-109

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 315.04  E-value: 2.25e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-139 5.49e-61

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 186.03  E-value: 5.49e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   5 PLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028691200  85 LFFMCLFMHVGRGIYYGSY--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-139 5.58e-54

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 167.94  E-value: 5.58e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200  14 FIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2028691200  94 VGRGIYYG--SYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-139 1.31e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 168.04  E-value: 1.31e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   5 PLMKIINHaFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028691200  85 LFFMCLFMHVGRGIYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 2-139 2.25e-109

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 315.04  E-value: 2.25e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
CYTB MTH00074
cytochrome b; Provisional
 2-139 7.11e-97

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 283.50  E-value: 7.11e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00074    7 KTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHAN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00074   87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00131
cytochrome b; Provisional
 2-139 2.13e-96

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 282.31  E-value: 2.13e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00131    6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00131   86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGA 143
CYTB MTH00119
cytochrome b; Provisional
 2-139 3.19e-94

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 276.78  E-value: 3.19e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00119    7 KSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHAN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00119   87 GASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00191
cytochrome b; Provisional
 2-139 4.40e-92

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 270.63  E-value: 4.40e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00191    3 KTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHAN 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00191   83 GASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGA 140
CYTB MTH00156
cytochrome b; Provisional
 7-139 1.08e-90

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 266.65  E-value: 1.08e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   7 MKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLF 86
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2028691200  87 FMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGA 133
CYTB MTH00034
cytochrome b; Validated
 2-139 3.63e-85

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 253.47  E-value: 3.63e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00034    6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00034   86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAA 143
CYTB MTH00145
cytochrome b; Provisional
 2-139 4.82e-84

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 250.59  E-value: 4.82e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00145    7 KSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHAN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00145   87 GASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGA 144
CYTB MTH00016
cytochrome b; Validated
 2-139 4.76e-82

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 245.74  E-value: 4.76e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00016    7 KTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHAN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00016   87 GASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00022
cytochrome b; Validated
 2-139 6.71e-71

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 217.26  E-value: 6.71e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00022    5 KENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHAN 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00022   85 GASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGA 142
CYTB MTH00224
cytochrome b; Provisional
 3-139 1.68e-70

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 216.33  E-value: 1.68e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   3 THPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANG 82
Cdd:MTH00224    8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028691200  83 ASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00224   88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00053
cytochrome b; Provisional
 2-139 3.85e-68

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 210.33  E-value: 3.85e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   2 KTHPLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00053    7 KENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHAN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  82 GASLFFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00053   87 GASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAA 144
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-139 5.49e-61

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 186.03  E-value: 5.49e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   5 PLMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028691200  85 LFFMCLFMHVGRGIYYGSY--TFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
CYTB MTH00033
cytochrome b; Provisional
 15-139 2.26e-54

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 174.74  E-value: 2.26e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200  15 IDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHV 94
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2028691200  95 GRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAA 140
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-139 5.58e-54

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 167.94  E-value: 5.58e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200  14 FIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2028691200  94 VGRGIYYG--SYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-139 1.31e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 168.04  E-value: 1.31e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   5 PLMKIINHaFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028691200  85 LFFMCLFMHVGRGIYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
CYTB MTH00086
cytochrome b; Provisional
 8-139 1.65e-44

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 148.55  E-value: 1.65e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   8 KIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFF 87
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2028691200  88 MCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAA 132
CYTB MTH00046
cytochrome b; Validated
 6-139 1.06e-31

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 115.08  E-value: 1.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200   6 LMKIINHAFIDLPAPSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASL 85
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2028691200  86 FFMCLFMHVGRGIYYGSYTFMETWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAA 134
PRK03735 PRK03735
cytochrome b6; Provisional
 29-137 1.12e-23

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 91.31  E-value: 1.12e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200  29 FGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIYYGSYTFME- 107
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2028691200 108 -TWNIGVILLFAVMATAFMGYVLPWGQMSFW 137
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 20-137 3.47e-18

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 77.07  E-value: 3.47e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691200  20 PSNISSWWNFGSLLGVCLIVQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASLFFMCLFMHVGRGIY 99
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2028691200 100 YGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFW 137
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
84-139 2.85e-11

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 57.64  E-value: 2.85e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691200  84 SLFFMCLFMHVGRGIYYGSYTFME--TWNIGVILLFAVMATAFMGYVLPWGQMSFWGA 139
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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