NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2027999170|gb|QTZ23196|]
View 

zinc finger protein 503, partial [Ambloplites ariommus]

Protein Classification

nlz1 domain-containing protein( domain architecture ID 10574975)

nlz1 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
nlz1 pfam12402
NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically ...
 161-208 1.49e-11

NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically between 42 and 57 amino acids in length. There is a conserved GAY sequence motif. There is a single completely conserved residue G that may be functionally important. Nlz1 self-associated via its C terminus, interacted with Nlz2, and bound to histone deacetylases.


:

Pssm-ID: 403564  Cd Length: 58  Bit Score: 59.24  E-value: 1.49e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2027999170 161 AGMTYPGSLAGAYAGYPQHFLPHG--------GSLVNAQLASSLGCS--KAGSSPLAG 208
Cdd:pfam12402   1 AGISYPGSLAGAYAGYPPQFLPHGvgldptkpSSLVGAQLAATLGCSgkPAGSSPLTG 58
 
Name Accession Description Interval E-value
nlz1 pfam12402
NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically ...
 161-208 1.49e-11

NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically between 42 and 57 amino acids in length. There is a conserved GAY sequence motif. There is a single completely conserved residue G that may be functionally important. Nlz1 self-associated via its C terminus, interacted with Nlz2, and bound to histone deacetylases.


Pssm-ID: 403564  Cd Length: 58  Bit Score: 59.24  E-value: 1.49e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2027999170 161 AGMTYPGSLAGAYAGYPQHFLPHG--------GSLVNAQLASSLGCS--KAGSSPLAG 208
Cdd:pfam12402   1 AGISYPGSLAGAYAGYPPQFLPHGvgldptkpSSLVGAQLAATLGCSgkPAGSSPLTG 58
 
Name Accession Description Interval E-value
nlz1 pfam12402
NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically ...
 161-208 1.49e-11

NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically between 42 and 57 amino acids in length. There is a conserved GAY sequence motif. There is a single completely conserved residue G that may be functionally important. Nlz1 self-associated via its C terminus, interacted with Nlz2, and bound to histone deacetylases.


Pssm-ID: 403564  Cd Length: 58  Bit Score: 59.24  E-value: 1.49e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2027999170 161 AGMTYPGSLAGAYAGYPQHFLPHG--------GSLVNAQLASSLGCS--KAGSSPLAG 208
Cdd:pfam12402   1 AGISYPGSLAGAYAGYPPQFLPHGvgldptkpSSLVGAQLAATLGCSgkPAGSSPLTG 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH