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Conserved domains on  [gi|2025194524|gb|QTT61867|]
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V3 [Opuntia virus 2-DBG_56]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Curto_V3 super family cl06462
Curtovirus V3 protein; This family consists of several Curtovirus V3 proteins of around 90 ...
 2-87 8.09e-32

Curtovirus V3 protein; This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam07436:

Pssm-ID: 369364  Cd Length: 87  Bit Score: 106.28  E-value: 8.09e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2025194524  2 MVCIPDWLFLLFIFSVLLDSTIIFYGTFQSGSISQKLSILSSRVDELFLAVQQVVHSRCATRDRTTD-FRRRRSLSAIPE 80
Cdd:pfam07436  1 MVCIPDWLFLLFIFSIILQSGINFYGTFQSERISAKLSSLASRFDELFLALQQVVFARNPVSRDRASdPRGRRGLSSIPE 80


                 ....*..
gi 2025194524 81 GSEEIAE 87
Cdd:pfam07436 81 GSEEAAE 87
 
Name Accession Description Interval E-value
Curto_V3 pfam07436
Curtovirus V3 protein; This family consists of several Curtovirus V3 proteins of around 90 ...
 2-87 8.09e-32

Curtovirus V3 protein; This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.


Pssm-ID: 369364  Cd Length: 87  Bit Score: 106.28  E-value: 8.09e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2025194524  2 MVCIPDWLFLLFIFSVLLDSTIIFYGTFQSGSISQKLSILSSRVDELFLAVQQVVHSRCATRDRTTD-FRRRRSLSAIPE 80
Cdd:pfam07436  1 MVCIPDWLFLLFIFSIILQSGINFYGTFQSERISAKLSSLASRFDELFLALQQVVFARNPVSRDRASdPRGRRGLSSIPE 80


                 ....*..
gi 2025194524 81 GSEEIAE 87
Cdd:pfam07436 81 GSEEAAE 87
 
Name Accession Description Interval E-value
Curto_V3 pfam07436
Curtovirus V3 protein; This family consists of several Curtovirus V3 proteins of around 90 ...
 2-87 8.09e-32

Curtovirus V3 protein; This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.


Pssm-ID: 369364  Cd Length: 87  Bit Score: 106.28  E-value: 8.09e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2025194524  2 MVCIPDWLFLLFIFSVLLDSTIIFYGTFQSGSISQKLSILSSRVDELFLAVQQVVHSRCATRDRTTD-FRRRRSLSAIPE 80
Cdd:pfam07436  1 MVCIPDWLFLLFIFSIILQSGINFYGTFQSERISAKLSSLASRFDELFLALQQVVFARNPVSRDRASdPRGRRGLSSIPE 80


                 ....*..
gi 2025194524 81 GSEEIAE 87
Cdd:pfam07436 81 GSEEAAE 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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