NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2025194523|gb|QTT61866|]
View 

V2 [Opuntia virus 2-DBG_56]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Curto_V2 super family cl06384
Curtovirus V2 protein; This family consists of several Curtovirus V2 proteins. The exact ...
 1-118 7.13e-57

Curtovirus V2 protein; This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process.


The actual alignment was detected with superfamily member pfam07325:

Pssm-ID: 148753  Cd Length: 126  Bit Score: 172.53  E-value: 7.13e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2025194523   1 MGPFRVDQFPKNYPSFLAVSTNCFLRYNKWCILGVQQEIELLTLEEGEAFLQFQREVKKLLRRKCRFGEKCALYEEIYKK 80
Cdd:pfam07325   1 MGPFRVDQFPDNYPAFLAVSTSCFFRYNKWCILGIHHEIEALTLEEGEAFLGFQKEVKKLLKLKCNFQRKCELYEEIYKK 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2025194523  81 YVSDGSEAKREVSDFLGEEEEDD-DWQEVPIKDGCSKEQ 118
Cdd:pfam07325  81 YLSDGPEEKGELPKCMAEEEEDYwAFEEIPMEEACDKDE 119
 
Name Accession Description Interval E-value
Curto_V2 pfam07325
Curtovirus V2 protein; This family consists of several Curtovirus V2 proteins. The exact ...
 1-118 7.13e-57

Curtovirus V2 protein; This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process.


Pssm-ID: 148753  Cd Length: 126  Bit Score: 172.53  E-value: 7.13e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2025194523   1 MGPFRVDQFPKNYPSFLAVSTNCFLRYNKWCILGVQQEIELLTLEEGEAFLQFQREVKKLLRRKCRFGEKCALYEEIYKK 80
Cdd:pfam07325   1 MGPFRVDQFPDNYPAFLAVSTSCFFRYNKWCILGIHHEIEALTLEEGEAFLGFQKEVKKLLKLKCNFQRKCELYEEIYKK 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2025194523  81 YVSDGSEAKREVSDFLGEEEEDD-DWQEVPIKDGCSKEQ 118
Cdd:pfam07325  81 YLSDGPEEKGELPKCMAEEEEDYwAFEEIPMEEACDKDE 119
 
Name Accession Description Interval E-value
Curto_V2 pfam07325
Curtovirus V2 protein; This family consists of several Curtovirus V2 proteins. The exact ...
 1-118 7.13e-57

Curtovirus V2 protein; This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process.


Pssm-ID: 148753  Cd Length: 126  Bit Score: 172.53  E-value: 7.13e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2025194523   1 MGPFRVDQFPKNYPSFLAVSTNCFLRYNKWCILGVQQEIELLTLEEGEAFLQFQREVKKLLRRKCRFGEKCALYEEIYKK 80
Cdd:pfam07325   1 MGPFRVDQFPDNYPAFLAVSTSCFFRYNKWCILGIHHEIEALTLEEGEAFLGFQKEVKKLLKLKCNFQRKCELYEEIYKK 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2025194523  81 YVSDGSEAKREVSDFLGEEEEDD-DWQEVPIKDGCSKEQ 118
Cdd:pfam07325  81 YLSDGPEEKGELPKCMAEEEEDYwAFEEIPMEEACDKDE 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH