NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2024652503|gb|QTQ94982|]
View 

replication associated protein [Okra leaf curl alphasatellite]

Protein Classification

replication-associated family protein( domain architecture ID 10261052)

replication-associated family protein similar to replication-associated protein and Para-Rep C1/7/9, both of which are ATP-dependent helicases

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 182-276 1.96e-17

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


:

Pssm-ID: 459992  Cd Length: 102  Bit Score: 76.10  E-value: 1.96e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024652503 182 WVYGPDGgEGKSTFARDLYR--------SGSWFYTRGgSADNVAYQYIGcLRNNVVFDIPRDKKDylqysLIEMFKDRLV 253
Cdd:pfam00910   2 WLYGPPG-CGKSTLAKYLARallkklglPKDSVYSRN-PDDDFWDGYTG-QPVVIIDDFGQNPDG-----PDEAELIRLV 73

                          90       100
                  ....*....|....*....|....*....
gi 2024652503 254 VSNKYEPLMAPLLNC------IHVLVMSN 276
Cdd:pfam00910  74 SSTPYPPPMAALEEKgtpftsKFVIVTSN 102
Viral_Rep super family cl03577
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 9-93 1.03e-15

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


The actual alignment was detected with superfamily member pfam02407:

Pssm-ID: 280553  Cd Length: 82  Bit Score: 71.06  E-value: 1.03e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024652503   9 WCFTVFFlsatAPGLVPLFENTHVSYACWQEEgSPTTKRRHLQGYLQLKGQRTLNQVKAIFGElKPHLEKQRARKtDDAR 88
Cdd:pfam02407   4 WCFTLNN----PTEFLSLFSQDELKYFVYQDE-RGTTGTKHLQGFVEFKNRTSLGQMKKKFPG-RAHLEIARGSQ-EEAR 76


                  ....*
gi 2024652503  89 DYCMK 93
Cdd:pfam02407  77 DYCMK 81
 
Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 182-276 1.96e-17

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 76.10  E-value: 1.96e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024652503 182 WVYGPDGgEGKSTFARDLYR--------SGSWFYTRGgSADNVAYQYIGcLRNNVVFDIPRDKKDylqysLIEMFKDRLV 253
Cdd:pfam00910   2 WLYGPPG-CGKSTLAKYLARallkklglPKDSVYSRN-PDDDFWDGYTG-QPVVIIDDFGQNPDG-----PDEAELIRLV 73

                          90       100
                  ....*....|....*....|....*....
gi 2024652503 254 VSNKYEPLMAPLLNC------IHVLVMSN 276
Cdd:pfam00910  74 SSTPYPPPMAALEEKgtpftsKFVIVTSN 102
Viral_Rep pfam02407
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 9-93 1.03e-15

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


Pssm-ID: 280553  Cd Length: 82  Bit Score: 71.06  E-value: 1.03e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024652503   9 WCFTVFFlsatAPGLVPLFENTHVSYACWQEEgSPTTKRRHLQGYLQLKGQRTLNQVKAIFGElKPHLEKQRARKtDDAR 88
Cdd:pfam02407   4 WCFTLNN----PTEFLSLFSQDELKYFVYQDE-RGTTGTKHLQGFVEFKNRTSLGQMKKKFPG-RAHLEIARGSQ-EEAR 76


                  ....*
gi 2024652503  89 DYCMK 93
Cdd:pfam02407  77 DYCMK 81
 
Name Accession Description Interval E-value
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 182-276 1.96e-17

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 76.10  E-value: 1.96e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024652503 182 WVYGPDGgEGKSTFARDLYR--------SGSWFYTRGgSADNVAYQYIGcLRNNVVFDIPRDKKDylqysLIEMFKDRLV 253
Cdd:pfam00910   2 WLYGPPG-CGKSTLAKYLARallkklglPKDSVYSRN-PDDDFWDGYTG-QPVVIIDDFGQNPDG-----PDEAELIRLV 73

                          90       100
                  ....*....|....*....|....*....
gi 2024652503 254 VSNKYEPLMAPLLNC------IHVLVMSN 276
Cdd:pfam00910  74 SSTPYPPPMAALEEKgtpftsKFVIVTSN 102
Viral_Rep pfam02407
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 9-93 1.03e-15

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


Pssm-ID: 280553  Cd Length: 82  Bit Score: 71.06  E-value: 1.03e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024652503   9 WCFTVFFlsatAPGLVPLFENTHVSYACWQEEgSPTTKRRHLQGYLQLKGQRTLNQVKAIFGElKPHLEKQRARKtDDAR 88
Cdd:pfam02407   4 WCFTLNN----PTEFLSLFSQDELKYFVYQDE-RGTTGTKHLQGFVEFKNRTSLGQMKKKFPG-RAHLEIARGSQ-EEAR 76


                  ....*
gi 2024652503  89 DYCMK 93
Cdd:pfam02407  77 DYCMK 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH