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Conserved domains on  [gi|2023954340|ref|WP_209792240|]
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MULTISPECIES: hypothetical protein, partial [Campylobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BamA super family cl34817
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
1-77 8.67e-10

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG4775:

Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 53.56  E-value: 8.67e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2023954340   1 KKFYAEKGYQNAKVRIDERpdstfDNTLILDFVVNKGPKVRINNINFGGNTV-DATKLKKQLKgTKEKSRLTLNPSFD 77
Cdd:COG4775   110 KEQYRSKGYYNAKVTITPE-----RNRVDLTFEIDEGEKAKIKKINFVGNKAfSDKELRKVLK-TKESGWLTKSDKYS 181
 
Name Accession Description Interval E-value
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
1-77 8.67e-10

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 53.56  E-value: 8.67e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2023954340   1 KKFYAEKGYQNAKVRIDERpdstfDNTLILDFVVNKGPKVRINNINFGGNTV-DATKLKKQLKgTKEKSRLTLNPSFD 77
Cdd:COG4775   110 KEQYRSKGYYNAKVTITPE-----RNRVDLTFEIDEGEKAKIKKINFVGNKAfSDKELRKVLK-TKESGWLTKSDKYS 181
OM_YaeT TIGR03303
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ...
 1-52 4.81e-08

outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274514 [Multi-domain]  Cd Length: 741  Bit Score: 48.73  E-value: 4.81e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2023954340   1 KKFYAEKGYQNAKVRIDERPDsTFDNTLILDFVVNKGPKVRINNINFGGNTV 52
Cdd:TIGR03303 284 KDLLGEKGYAFANVNPRPQIN-DENKTVDLTFKVDPGKRVYVRRINISGNTR 334
 
Name Accession Description Interval E-value
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
1-77 8.67e-10

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 53.56  E-value: 8.67e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2023954340   1 KKFYAEKGYQNAKVRIDERpdstfDNTLILDFVVNKGPKVRINNINFGGNTV-DATKLKKQLKgTKEKSRLTLNPSFD 77
Cdd:COG4775   110 KEQYRSKGYYNAKVTITPE-----RNRVDLTFEIDEGEKAKIKKINFVGNKAfSDKELRKVLK-TKESGWLTKSDKYS 181
OM_YaeT TIGR03303
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ...
 1-52 4.81e-08

outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274514 [Multi-domain]  Cd Length: 741  Bit Score: 48.73  E-value: 4.81e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2023954340   1 KKFYAEKGYQNAKVRIDERPDsTFDNTLILDFVVNKGPKVRINNINFGGNTV 52
Cdd:TIGR03303 284 KDLLGEKGYAFANVNPRPQIN-DENKTVDLTFKVDPGKRVYVRRINISGNTR 334
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
1-51 1.09e-06

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 44.70  E-value: 1.09e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2023954340   1 KKFYAEKGYQNAKVRIDERPDSTfDNTLILDFVVNKGPKVRINNINFGGNT 51
Cdd:COG4775   274 TDLYGDNGYAFARVEPVPEIDPE-NDTVDLTFRIDEGPRVYVDRIEIEGNT 323
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
1-62 5.23e-06

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 42.77  E-value: 5.23e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2023954340   1 KKFYAEKGYQNAKVRIDERPDSTFDNTLILDFVVNKGPKVRINNINFGGNTVDATKLKKQLK 62
Cdd:COG4775   193 RSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQYKVGDIKFEGNLVDEEELRKLLK 254
OM_YaeT TIGR03303
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ...
 1-68 1.27e-05

outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274514 [Multi-domain]  Cd Length: 741  Bit Score: 41.80  E-value: 1.27e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2023954340   1 KKFYAEKGYQNAKV--RIDERPDstfdNTLILDFVVNKGPKVRINNINFGGNTV-DATKLKKQLKgTKEKS 68
Cdd:TIGR03303 113 KEFYRSRGKYNAKVeaKVTPLPR----NRVDLEFNIKEGKKAKIKKINFVGNKAfSDSELRDVFA-LKESN 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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