|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
212-563 |
3.88e-161 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 467.33 E-value: 3.88e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 212 EQLIDLQTQVVQLRSAIGEKEKLP-ADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESF 290
Cdd:COG3829 113 TELKRLERKLREEELERGLSAKYTfDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPF 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 291 IAINCAAIPHDLVESELFGVEKGAFTGALSA-RPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRK 369
Cdd:COG3829 193 VAVNCAAIPENLLESELFGYEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIP 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 370 IDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRAILAY 449
Cdd:COG3829 273 VDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAY 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 450 PWPGNIRELLNMVERGVILAPNGTrIELEQMfssssIDPAMEFGLDSNGSLGVDTREPVEDlyefvikgnmtldtVEATL 529
Cdd:COG3829 353 DWPGNVRELENVIERAVVLSEGDV-ITPEHL-----PEYLLEEAEAASAAEEGSLKEALEE--------------VEKEL 412
|
330 340 350
....*....|....*....|....*....|....
gi 2017541174 530 IESAVKTANGNLSAAARALGLTRPQLAYRLRRLQ 563
Cdd:COG3829 413 IEEALEKTGGNKSKAAKALGISRSTLYRKLKKYG 446
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
209-562 |
3.03e-118 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 359.87 E-value: 3.03e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 209 SIAEQLIDLQTQVVQLRS---AIGEKEKLPADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSR 285
Cdd:PRK05022 157 RNALLIEQLESQAELPQDvaeFLRQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 286 CNESFIAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDH 365
Cdd:PRK05022 237 ADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSD 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 366 KVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRA 445
Cdd:PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 446 ILAYPWPGNIRELLNMVERGVILA-PNGTRIELeqmfsssSIDPAMeFGLDSNGSLGVDTREPVEdlyefVIKGNMTL-D 523
Cdd:PRK05022 397 LLAYDWPGNVRELEHVISRAALLArARGAGRIV-------TLEAQH-LDLPAEVALPPPEAAAAP-----AAVVSQNLrE 463
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2017541174 524 TVEAT---LIESAVKTANGNLSAAARALGLTRPQLaYRL-RRL 562
Cdd:PRK05022 464 ATEAFqrqLIRQALAQHQGNWAAAARALELDRANL-HRLaKRL 505
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
209-562 |
2.63e-109 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 337.46 E-value: 2.63e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 209 SIAEQLIDLQTQVVQLRSAIGEKEKLPAD--------VIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALH 280
Cdd:TIGR01817 161 LVAQRRERLIAEAVQLSKQLRDKAPEIARrrsgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIH 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 281 NRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIE 360
Cdd:TIGR01817 241 YLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 361 RLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNgFTD 440
Cdd:TIGR01817 321 RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT-ITP 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 441 KAMRAILAYPWPGNIRELLNMVERGVILAPNGTRIELEQMFSSSSIDPAMefgLDSNGSLGVDTREPVEDLYEFVIKGNM 520
Cdd:TIGR01817 400 SAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSDFSCQSGQCLSPM---LAKTCPHGHISIDPLAGTTPPHSPASA 476
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2017541174 521 TLDTV----EATLIE-----SAVKTANGNLSAAARALGLTRPQLAYRLRRL 562
Cdd:TIGR01817 477 ALPGEpglsGPTLSErerliAALEQAGWVQAKAARLLGMTPRQVGYALRKL 527
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
238-404 |
1.12e-105 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 314.72 E-value: 1.12e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 238 VIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTG 317
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 318 ALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYY 397
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 2017541174 398 RLNAFQI 404
Cdd:pfam00158 161 RLNVIPI 167
|
|
| XylR_N |
pfam06505 |
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of ... |
19-118 |
1.99e-53 |
|
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to pfam02830.
Pssm-ID: 428979 Cd Length: 100 Bit Score: 176.94 E-value: 1.99e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 19 LRSRLRFCAESGQIWLHEHRMLLIHAEVQASLRRELIDTLGMDRARGLLTRMGYAAGMRDFELARTRAGSDGDVEAFMAG 98
Cdd:pfam06505 1 LRELLRFSPEGGRIWLDGQRMLLLHASALGALRKELIDTLGVERARGLLTRMGYASGARDAELARKLRPDASEAEAFLAG 80
|
90 100
....*....|....*....|
gi 2017541174 99 PQLHMLEGIAKVSTVSLEYD 118
Cdd:pfam06505 81 PQLHMLEGFVRVEPVRLEID 100
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
243-408 |
8.71e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 94.91 E-value: 8.71e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 243 KAFRTAYDMLQQAAKSQI--TVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEkgaftgALS 320
Cdd:cd00009 1 VGQEEAIEALREALELPPpkNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 321 ARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEierlgDHKVRKIDVRLVAATNVDLkqlvkEGKFRSDLYYRLN 400
Cdd:cd00009 75 LLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLN-----DLRIDRENVRVIGATNRPL-----LGDLDRALYDRLD 144
|
....*...
gi 2017541174 401 aFQINIPP 408
Cdd:cd00009 145 -IRIVIPL 151
|
|
| V4R |
smart00989 |
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ... |
131-190 |
2.20e-20 |
|
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;
Pssm-ID: 198057 Cd Length: 61 Bit Score: 84.64 E-value: 2.20e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 131 ENSWESEWHKHYYGTYSEPVCWSQIGYACAYASSFMGRPILYKELQCAGMGENHCRIVGK 190
Cdd:smart00989 1 VISVEDCPECAGLGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVK 60
|
|
| COG1719 |
COG1719 |
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only]; |
39-193 |
1.01e-17 |
|
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];
Pssm-ID: 441325 [Multi-domain] Cd Length: 137 Bit Score: 79.74 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 39 MLLIHAEVQAsLRRELIDTLGMDRARgLLTRMGYAAGMRDFELARTRAgsdgdvEAFMAGPQLHMLEGIAKVSTVSLEYD 118
Cdd:COG1719 1 MAAEEDFLVA-LFRALEEELGIAAAR-VLYRAGKRIGKELAERFKEEA------DLLEALKEFWKLSGWGILEIDELSEG 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2017541174 119 RdagsfyAEFIWENSWESEWhkhyYGTYSEPVCWSQIGYACAYASSFMGRPILYKELQCAGMGENHCRIVGKLLE 193
Cdd:COG1719 73 P------LVITVEDSPECRG----LPNSGKPVCHFLAGLLAGFFSELLGKEVEVRETECEAMGDDYCRFEVRPKE 137
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
261-379 |
6.88e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.55 E-value: 6.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 261 TVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVES---ELFGVEKGAFTGALSARpGRFERA---NGGTL 334
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKPDVL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2017541174 335 FLDEIGDLPLSAQVKLLRVLQEgeiERLGDHKVRKIDVRLVAATN 379
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTN 124
|
|
| V4R |
pfam02830 |
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ... |
130-191 |
1.26e-09 |
|
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.
Pssm-ID: 427011 Cd Length: 62 Bit Score: 54.22 E-value: 1.26e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2017541174 130 WENSWESEWHKHYYGTYSEPVCWSQIGYACAYASSFMGRPILYKELQCAGMGENHCRIVGKL 191
Cdd:pfam02830 1 LVISIEESPECAGLPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
212-563 |
3.88e-161 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 467.33 E-value: 3.88e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 212 EQLIDLQTQVVQLRSAIGEKEKLP-ADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESF 290
Cdd:COG3829 113 TELKRLERKLREEELERGLSAKYTfDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPF 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 291 IAINCAAIPHDLVESELFGVEKGAFTGALSA-RPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRK 369
Cdd:COG3829 193 VAVNCAAIPENLLESELFGYEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIP 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 370 IDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRAILAY 449
Cdd:COG3829 273 VDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKGISPEALELLLAY 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 450 PWPGNIRELLNMVERGVILAPNGTrIELEQMfssssIDPAMEFGLDSNGSLGVDTREPVEDlyefvikgnmtldtVEATL 529
Cdd:COG3829 353 DWPGNVRELENVIERAVVLSEGDV-ITPEHL-----PEYLLEEAEAASAAEEGSLKEALEE--------------VEKEL 412
|
330 340 350
....*....|....*....|....*....|....
gi 2017541174 530 IESAVKTANGNLSAAARALGLTRPQLAYRLRRLQ 563
Cdd:COG3829 413 IEEALEKTGGNKSKAAKALGISRSTLYRKLKKYG 446
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
212-562 |
2.12e-137 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 405.50 E-value: 2.12e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 212 EQLIDLQTQVVQLRSAIGEKEKLPaDVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFI 291
Cdd:COG2204 108 EELLAAVERALERRRLRRENAEDS-GLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFV 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 292 AINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKID 371
Cdd:COG2204 187 AVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVD 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 372 VRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNgFTDKAMRAILAYPW 451
Cdd:COG2204 267 VRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALLAYDW 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 452 PGNIRELLNMVERGVILAPNGTrieleqmfssssIDPamefgldsngslgvdtrepvEDLYEfvikgnmTLDTVEATLIE 531
Cdd:COG2204 346 PGNVRELENVIERAVILADGEV------------ITA--------------------EDLPE-------ALEEVERELIE 386
|
330 340 350
....*....|....*....|....*....|.
gi 2017541174 532 SAVKTANGNLSAAARALGLTRPQLAYRLRRL 562
Cdd:COG2204 387 RALEETGGNVSRAAELLGISRRTLYRKLKKY 417
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
236-563 |
5.94e-121 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 370.77 E-value: 5.94e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 236 ADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAF 315
Cdd:COG3284 321 AALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAF 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 316 TGALS-ARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSD 394
Cdd:COG3284 401 TGARRkGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFRED 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 395 LYYRLNAFQINIPPLRERkEDIPLLANRFIEKYSAIHGKKlnGFTDKAMRAILAYPWPGNIRELLNMVERGVILAPNGtR 474
Cdd:COG3284 481 LYYRLNGLTLTLPPLRER-EDLPALIEHLLRELAAGRGPL--RLSPEALALLAAYPWPGNVRELRNVLRTALALADGG-V 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 475 IELEQMfssssidPAmefgldsngslgvDTREPVEDLYEFVIKGNMTLDTVEATLIESAVKTANGNLSAAARALGLTRPQ 554
Cdd:COG3284 557 ITVEDL-------PD-------------ELRAELAAAAPAAAAPLTSLEEAERDAILRALRACGGNVSAAARALGISRST 616
|
330
....*....|
gi 2017541174 555 LaYR-LRRLQ 563
Cdd:COG3284 617 L-YRkLKRYG 625
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
209-562 |
3.03e-118 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 359.87 E-value: 3.03e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 209 SIAEQLIDLQTQVVQLRS---AIGEKEKLPADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSR 285
Cdd:PRK05022 157 RNALLIEQLESQAELPQDvaeFLRQEALKEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 286 CNESFIAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDH 365
Cdd:PRK05022 237 ADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSD 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 366 KVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRA 445
Cdd:PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 446 ILAYPWPGNIRELLNMVERGVILA-PNGTRIELeqmfsssSIDPAMeFGLDSNGSLGVDTREPVEdlyefVIKGNMTL-D 523
Cdd:PRK05022 397 LLAYDWPGNVRELEHVISRAALLArARGAGRIV-------TLEAQH-LDLPAEVALPPPEAAAAP-----AAVVSQNLrE 463
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2017541174 524 TVEAT---LIESAVKTANGNLSAAARALGLTRPQLaYRL-RRL 562
Cdd:PRK05022 464 ATEAFqrqLIRQALAQHQGNWAAAARALELDRANL-HRLaKRL 505
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
209-562 |
2.63e-109 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 337.46 E-value: 2.63e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 209 SIAEQLIDLQTQVVQLRSAIGEKEKLPAD--------VIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALH 280
Cdd:TIGR01817 161 LVAQRRERLIAEAVQLSKQLRDKAPEIARrrsgkedgIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIH 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 281 NRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIE 360
Cdd:TIGR01817 241 YLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 361 RLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNgFTD 440
Cdd:TIGR01817 321 RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLT-ITP 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 441 KAMRAILAYPWPGNIRELLNMVERGVILAPNGTRIELEQMFSSSSIDPAMefgLDSNGSLGVDTREPVEDLYEFVIKGNM 520
Cdd:TIGR01817 400 SAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSDFSCQSGQCLSPM---LAKTCPHGHISIDPLAGTTPPHSPASA 476
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2017541174 521 TLDTV----EATLIE-----SAVKTANGNLSAAARALGLTRPQLAYRLRRL 562
Cdd:TIGR01817 477 ALPGEpglsGPTLSErerliAALEQAGWVQAKAARLLGMTPRQVGYALRKL 527
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
211-563 |
7.89e-107 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 328.25 E-value: 7.89e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 211 AEQLIDLQTQVVQLRSAIGEKEkLPAdVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESF 290
Cdd:TIGR02915 116 AFHLYTLETENRRLQSALGGTA-LRG-LITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRF 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 291 IAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKI 370
Cdd:TIGR02915 194 VAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPV 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 371 DVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRAILAYP 450
Cdd:TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHA 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 451 WPGNIRELLNMVERGVILApNGTRIELEqmfssssidpamefgldsngSLGVDTREPVEdlYEFVIKGNMTLDTVEATLI 530
Cdd:TIGR02915 354 WPGNVRELENKVKRAVIMA-EGNQITAE--------------------DLGLDARERAE--TPLEVNLREVRERAEREAV 410
|
330 340 350
....*....|....*....|....*....|...
gi 2017541174 531 ESAVKTANGNLSAAARALGLTRPQLAYRLRRLQ 563
Cdd:TIGR02915 411 RKAIARVDGNIARAAELLGITRPTLYDLMKKHG 443
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
238-404 |
1.12e-105 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 314.72 E-value: 1.12e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 238 VIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTG 317
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 318 ALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYY 397
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 2017541174 398 RLNAFQI 404
Cdd:pfam00158 161 RLNVIPI 167
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
211-560 |
2.62e-99 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 309.09 E-value: 2.62e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 211 AEQLIDLQTQVVQLRSAIGEKEKLpADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESF 290
Cdd:PRK11361 119 ALQLQSMKKEIRHLHQALSTSWQW-GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPF 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 291 IAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKI 370
Cdd:PRK11361 198 IKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKV 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 371 DVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRAILAYP 450
Cdd:PRK11361 278 DIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWS 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 451 WPGNIRELLNMVERGVILApNGTRIELEQMfssssidPAMEFGLDSNGSlGVDTREPVE-DLYEFVIKgnmtldtVEATL 529
Cdd:PRK11361 358 WPGNIRELSNVIERAVVMN-SGPIIFSEDL-------PPQIRQPVCNAG-EVKTAPVGErNLKEEIKR-------VEKRI 421
|
330 340 350
....*....|....*....|....*....|.
gi 2017541174 530 IESAVKTANGNLSAAARALGLTRPQLAYRLR 560
Cdd:PRK11361 422 IMEVLEQQEGNRTRTALMLGISRRALMYKLQ 452
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
238-561 |
2.87e-99 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 304.60 E-value: 2.87e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 238 VIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTG 317
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 318 ALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYY 397
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 398 RLnAFQ-INIPPLRERKEDIPLLANRFIEKYSAIHGKKL-NGFTDKAMRAILAYPWPGNIRELLNMVERGVILAPNGTRI 475
Cdd:TIGR02974 161 RL-AFDvITLPPLRERQEDIMLLAEHFAIRMARELGLPLfPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEEAP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 476 eLEQM----FSSSSIDPAMEFGLDSNGSLGVDTREPVEDLYEFVIKGNMTLDTVEATLIESAVKTANGNLSAAARALGLT 551
Cdd:TIGR02974 240 -IDEIiidpFASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAQQDYEIELLQQALAEAQFNQRKAAELLGLT 318
|
330
....*....|
gi 2017541174 552 RPQLAYRLRR 561
Cdd:TIGR02974 319 YHQLRGLLRK 328
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
204-562 |
3.96e-99 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 308.98 E-value: 3.96e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 204 FFVKE--SIAEQLIDLQTQVVQLRSAIGEKEKlPADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHN 281
Cdd:TIGR01818 101 FDLDEavTLVERALAHAQEQVALPADAGEAED-SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHR 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 282 RSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIER 361
Cdd:TIGR01818 180 HSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYR 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 362 LGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFI---EKYSAIHGKKLNGF 438
Cdd:TIGR01818 260 VGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLalaARELDVEPKLLDPE 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 439 TDKAMRailAYPWPGNIRELLNMVERGVILAPngtrielEQMFSSSSIDPAMEFGLDSNGSLGVDTREPVEDLYEFVIKG 518
Cdd:TIGR01818 340 ALERLK---QLRWPGNVRQLENLCRWLTVMAS-------GDEVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAWAKQ 409
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2017541174 519 NMT----------LDTVEATLIESAVKTANGNLSAAARALGLTRPQLAYRLRRL 562
Cdd:TIGR01818 410 ALSrgeqglldraLPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKLKEL 463
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
196-562 |
4.68e-91 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 294.43 E-value: 4.68e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 196 DDATEYSRFF-VKESIAEQLIDLQTQVVQLRSAIGEkeklpadVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEV 274
Cdd:PRK15429 342 DNALAYQEIHrLKERLVDENLALTEQLNNVDSEFGE-------IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKEL 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 275 FARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVL 354
Cdd:PRK15429 415 IARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 355 QEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKK 434
Cdd:PRK15429 495 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRN 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 435 LNGFTDKAMRAILAYPWPGNIRELLNMVERGVILApNGTRIELEQmfssssidPAMEFGLDSNGSLGVDTREPVEDLYEF 514
Cdd:PRK15429 575 IDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT-RGNVLQLSL--------PDITLPEPETPPAATVVAQEGEDEYQL 645
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2017541174 515 VIKgnmtldtveatliesAVKTANGNLS---AAARALGLTRPQLAYRLRRL 562
Cdd:PRK15429 646 IVR---------------VLKETNGVVAgpkGAAQRLGLKRTTLLSRMKRL 681
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
238-561 |
1.10e-90 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 286.54 E-value: 1.10e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 238 VIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTG 317
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 318 ALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYY 397
Cdd:PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 398 RLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRAILAYPWPGNIRELLNMVERGVILApNGTRI-- 475
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL-TGEYIse 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 476 -ELEQMFSSSSIdPAMefgldsngslgvdtrePVEDLYEFVikgnmtldTVEATLIESAVKTANGNLSAAARALGLTRPQ 554
Cdd:PRK10365 380 rELPLAIASTPI-PLG----------------QSQDIQPLV--------EVEKEVILAALEKTGGNKTEAARQLGITRKT 434
|
....*..
gi 2017541174 555 LAYRLRR 561
Cdd:PRK10365 435 LLAKLSR 441
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
221-495 |
5.20e-88 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 281.69 E-value: 5.20e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 221 VVQLRSAIGEKEKLPA----------DVIGNSKAFRTaydMLQQAAK-SQITV--LLLGETGAGKEVFARALHNRSSRCN 287
Cdd:COG3283 179 VVTLKSAARLGEQLQAlqvnddsgfdHIVASSPKMRQ---VIRQAKKmAMLDAplLIQGETGTGKELLARACHLASPRGD 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 288 ESFIAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKV 367
Cdd:COG3283 256 KPFLALNCAALPDDVAESELFGYAPGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 368 RKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRAIL 447
Cdd:COG3283 336 VKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPRLSPDLVDFLQ 415
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2017541174 448 AYPWPGNIRELLNMVERGVILAPNGT----RIEL-EQMFSSSSIDPAMEFGLD 495
Cdd:COG3283 416 SYPWPGNVRQLENALYRAVSLLEGDEltpeDLQLpEYAASAGLLDDLLEGSLD 468
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
250-562 |
2.44e-85 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 269.02 E-value: 2.44e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 250 DMLQQAAkSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESelfgvekgaftgalsarpgrfera 329
Cdd:COG3604 107 RLLETLA-SLAAVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES------------------------ 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 330 nggtlfldeigdlplsaqvkllrvLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPL 409
Cdd:COG3604 162 ------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPL 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 410 RERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRAILAYPWPGNIRELLNMVERGVILAPnGTRIELEQmfssssidpa 489
Cdd:COG3604 218 RERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAE-GGVLDADD---------- 286
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2017541174 490 mefgldsngsLGVDTREPVEDlyefvikgnmtldtVEATLIESAVKTANGNLSAAARALGLTRPQLAYRLRRL 562
Cdd:COG3604 287 ----------LAPGSREALEE--------------VEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKL 335
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
236-562 |
2.84e-85 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 273.28 E-value: 2.84e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 236 ADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAF 315
Cdd:PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 316 TGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDL 395
Cdd:PRK10923 218 TGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 396 YYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRAILAYPWPGNIRELLNMVERGVILAPnGTRI 475
Cdd:PRK10923 298 FHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA-GQEV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 476 ELE----QMFSSSSIDPAMEFGLDSNGSLGVD-----TREPVEDLYefvikgNMTLDTVEATLIESAVKTANGNLSAAAR 546
Cdd:PRK10923 377 LIQdlpgELFESTVPESTSQMQPDSWATLLAQwadraLRSGHQNLL------SEAQPELERTLLTTALRHTQGHKQEAAR 450
|
330
....*....|....*.
gi 2017541174 547 ALGLTRPQLAYRLRRL 562
Cdd:PRK10923 451 LLGWGRNTLTRKLKEL 466
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
239-555 |
1.55e-83 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 263.84 E-value: 1.55e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 239 IGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTGA 318
Cdd:PRK11608 9 LGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 319 LSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYR 398
Cdd:PRK11608 89 QKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDR 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 399 LnAFQ-INIPPLRERKEDIPLLANRF-IEKYSAIHGKKLNGFTDKAMRAILAYPWPGNIRELLNMVERGV---------- 466
Cdd:PRK11608 169 L-AFDvVQLPPLRERQSDIMLMAEHFaIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVyrhgtseypl 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 467 ---ILAPngtrieleqmFSSSSIDPAMEFGLDSNG-SLGVDTREpvedlyefvikgnmTLDTVEATLIESAVKTANGNLS 542
Cdd:PRK11608 248 dniIIDP----------FKRRPAEEAIAVSETTSLpTLPLDLRE--------------WQHQQEKELLQRSLQQAKFNQK 303
|
330
....*....|...
gi 2017541174 543 AAARALGLTRPQL 555
Cdd:PRK11608 304 RAAELLGLTYHQL 316
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
235-569 |
3.60e-83 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 269.67 E-value: 3.60e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 235 PADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALH--------NRSSRCNESFIAINCAAIPHDLVESE 306
Cdd:PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAE 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 307 LFGVEKGAFTGAL-SARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQL 385
Cdd:PRK15424 298 LFGYEEGAFTGSRrGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEED 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 386 VKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSA-----IHGKKLNGFTdKAMRAILAYPWPGNIRELLN 460
Cdd:PRK15424 378 VRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAalsapFSAALRQGLQ-QCETLLLHYDWPGNVRELRN 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 461 MVERgviLApngtrieleqMFSSSSIDPAMEFGLDSNGS--LGVDTREPVEdlyefvikgnmtlDTVEATLIESAVKTAN 538
Cdd:PRK15424 457 LMER---LA----------LFLSVEPTPDLTPQFLQLLLpeLARESAKTPA-------------PRLLAATLQQALERFN 510
|
330 340 350
....*....|....*....|....*....|.
gi 2017541174 539 GNLSAAARALGLTRPQLayrLRRLQENSVAP 569
Cdd:PRK15424 511 GDKTAAANYLGISRTTL---WRRLKAEAKAQ 538
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
251-559 |
1.34e-81 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 262.85 E-value: 1.34e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 251 MLQQA---AKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFE 327
Cdd:PRK15115 146 LLEQArmvAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 328 RANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIP 407
Cdd:PRK15115 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 408 PLRERKEDIPLLANRFIEKYSAIHGKKLNGFTDKAMRAILAYPWPGNIRELLNMVERGVIL--APngtrieleqMFSSSS 485
Cdd:PRK15115 306 ALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALtsSP---------VISDAL 376
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2017541174 486 IDPAMEfgldsngslGVDTREP--VEDLYEFvikgnmtldtvEATLIESAVKTANGNLSAAARALGLTRPQLaYRL 559
Cdd:PRK15115 377 VEQALE---------GENTALPtfVEARNQF-----------ELNYLRKLLQITKGNVTHAARMAGRNRTEF-YKL 431
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
235-560 |
1.19e-78 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 257.48 E-value: 1.19e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 235 PADVIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGA 314
Cdd:TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGA 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 315 FTGAL-SARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRS 393
Cdd:TIGR02329 291 FTGARrGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 394 DLYYRLNAFQINIPPLRERKEDIPLLANRFIEK--------YSAIHGKKLNGFTDkamrAILAYPWPGNIRELLNMVER- 464
Cdd:TIGR02329 371 DLFYRLSILRIALPPLRERPGDILPLAAEYLVQaaaalrlpDSEAAAQVLAGVAD----PLQRYPWPGNVRELRNLVERl 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 465 GVILAPNGTRIELEQMFSSSSIDPAMEFGLDSNGSLGVDTREpvedlyefvikgnmtldTVEATLIESAVKTANGNLSAA 544
Cdd:TIGR02329 447 ALELSAMPAGALTPDVLRALAPELAEASGKGKTSALSLRERS-----------------RVEALAVRAALERFGGDRDAA 509
|
330
....*....|....*.
gi 2017541174 545 ARALGLTRPQLAYRLR 560
Cdd:TIGR02329 510 AKALGISRTTLWRRLK 525
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
212-563 |
1.68e-69 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 236.11 E-value: 1.68e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 212 EQLIDLQTQvvQLRSAIGEKEKLPADVIGNSKAFRTAydmlQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFI 291
Cdd:PRK11388 307 EQMRQLMTS--QLGKVSHTFDHMPQDSPQMRRLIHFG----RQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYI 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 292 AINCAAIPHDLVESELFGvekGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKID 371
Cdd:PRK11388 381 AVNCQLYPDEALAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVD 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 372 VRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHGKKLNgFTDKAMRAILAYPW 451
Cdd:PRK11388 458 VRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSYRW 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 452 PGNIRELLNMVERgVILAPNGTRIELEQMfssssidPAMefgLDSNGSLGVDTREPVEDlyefvikgNMTLDTVEATLIE 531
Cdd:PRK11388 537 PGNDFELRSVIEN-LALSSDNGRIRLSDL-------PEH---LFTEQATDDVSATRLST--------SLSLAELEKEAII 597
|
330 340 350
....*....|....*....|....*....|..
gi 2017541174 532 SAVKTANGNLSAAARALGLTRPQLAYRLRRLQ 563
Cdd:PRK11388 598 NAAQVCGGRIQEMAALLGIGRTTLWRKMKQHG 629
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
221-464 |
6.81e-65 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 221.10 E-value: 6.81e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 221 VVQLRSA--IGEK-EKLPAD-------VIGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESF 290
Cdd:PRK10820 179 VVMLRSTarMGRQlQNLAVNddsafsqIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPF 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 291 IAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEIERLG-DHKVrK 369
Cdd:PRK10820 259 LALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGeDHEV-H 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 370 IDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRERKEDIPLLANRFIEKYSAIHG---KKLNGftdkAMRAI 446
Cdd:PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGvprPKLAA----DLNTV 413
|
250
....*....|....*....
gi 2017541174 447 LA-YPWPGNIRELLNMVER 464
Cdd:PRK10820 414 LTrYGWPGNVRQLKNAIYR 432
|
|
| XylR_N |
pfam06505 |
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of ... |
19-118 |
1.99e-53 |
|
Activator of aromatic catabolism; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators in several proteobacteria, including activators of phenol degradation such as XylR. It is found adjacent to pfam02830.
Pssm-ID: 428979 Cd Length: 100 Bit Score: 176.94 E-value: 1.99e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 19 LRSRLRFCAESGQIWLHEHRMLLIHAEVQASLRRELIDTLGMDRARGLLTRMGYAAGMRDFELARTRAGSDGDVEAFMAG 98
Cdd:pfam06505 1 LRELLRFSPEGGRIWLDGQRMLLLHASALGALRKELIDTLGVERARGLLTRMGYASGARDAELARKLRPDASEAEAFLAG 80
|
90 100
....*....|....*....|
gi 2017541174 99 PQLHMLEGIAKVSTVSLEYD 118
Cdd:pfam06505 81 PQLHMLEGFVRVEPVRLEID 100
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
255-479 |
9.89e-45 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 166.16 E-value: 9.89e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 255 AAKSQITVLLLGETGAGKEVFAR---ALHNRSSRCNESFIAINCAAIPHDLVESELFGVEKGAFTGALSARPGRFERANG 331
Cdd:COG4650 204 AIRSRAPILLTGPTGAGKSQLARriyELKKARHQVSGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADG 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 332 GTLFLDEIGDLPLSAQVKLLRVLQEGEIERLGDHKVRKIDVRLVAATNVDLKQLVKEGKFRSDLYYRLNAFQINIPPLRE 411
Cdd:COG4650 284 GVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAE 363
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2017541174 412 RKEDIP-----LLanrfiEKYSAIHGKKLnGFTDKAMRAILAY------PWPGNIRELLNMVERGVILAPNGtRIELEQ 479
Cdd:COG4650 364 RREDIEpnldyEL-----ARFAREQGRRV-RFNKEARARYLAFatspeaLWSGNFRDLNASVTRMATLAEGG-RITVAL 435
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
203-458 |
6.55e-36 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 143.71 E-value: 6.55e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 203 RFFVKESIAEQLIDLQTQVVQLRSAIGEKEKLP------ADVIGNSKAFRTAydmLQQAaKSQI-------TVLLLGETG 269
Cdd:COG1221 65 LFLDKEAFEEQFGTKLKSEYSFVELLAEKENNEeeedpfDNLIGANGSLKNA---IEQA-KAAIlyppkglHTLILGPTG 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 270 AGKEVFARALHN---RSSRCNES--FIAINCAaiphD------LVESELFGVEKGAFTGALSARPGRFERANGGTLFLDE 338
Cdd:COG1221 141 VGKSFFAELMYEyaiEIGVLPEDapFVVFNCA----DyannpqLLMSQLFGYVKGAFTGADKDKEGLIEKADGGILFLDE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 339 IGDLPLSAQVKLLRVLQEGEIERLGD-HKVRKIDVRLVAATNVDLKqlvkegkfrSDLyyrLNAF------QINIPPLRE 411
Cdd:COG1221 217 VHRLPPEGQEMLFTFMDKGIYRRLGEtEKTRKANVRIIFATTEDPE---------SSL---LKTFlrripmVIKLPSLEE 284
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2017541174 412 R--KEDIPLLaNRFIEKYSAIHGKKLNgFTDKAMRAILAYPWPGNIREL 458
Cdd:COG1221 285 RslEERLELI-KHFFKEEAKRLNKPIK-VSKEVLKALLLYDCPGNIGQL 331
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
239-409 |
1.07e-25 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 102.42 E-value: 1.07e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 239 IGNSKAFRTAYDMLQQAAKSQITVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLveselfgvekgaftga 318
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLEL---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 319 lsarpgrFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEierlgdhkvrKIDVRLVAATNVDLKQLVKEGKFRSDLYYR 398
Cdd:pfam14532 65 -------LEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
gi 2017541174 399 LNAFQINIPPL 409
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
243-408 |
8.71e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 94.91 E-value: 8.71e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 243 KAFRTAYDMLQQAAKSQI--TVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVESELFGVEkgaftgALS 320
Cdd:cd00009 1 VGQEEAIEALREALELPPpkNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------LVR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 321 ARPGRFERANGGTLFLDEIGDLPLSAQVKLLRVLQEGEierlgDHKVRKIDVRLVAATNVDLkqlvkEGKFRSDLYYRLN 400
Cdd:cd00009 75 LLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLN-----DLRIDRENVRVIGATNRPL-----LGDLDRALYDRLD 144
|
....*...
gi 2017541174 401 aFQINIPP 408
Cdd:cd00009 145 -IRIVIPL 151
|
|
| V4R |
smart00989 |
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may ... |
131-190 |
2.20e-20 |
|
The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons;
Pssm-ID: 198057 Cd Length: 61 Bit Score: 84.64 E-value: 2.20e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 131 ENSWESEWHKHYYGTYSEPVCWSQIGYACAYASSFMGRPILYKELQCAGMGENHCRIVGK 190
Cdd:smart00989 1 VISVEDCPECAGLGKGGEPVCWFEAGYLAGYLSALTGRPVRVRETECAAMGDDHCRFVVK 60
|
|
| COG1719 |
COG1719 |
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only]; |
39-193 |
1.01e-17 |
|
Predicted hydrocarbon binding protein, contains 4VR domain [General function prediction only];
Pssm-ID: 441325 [Multi-domain] Cd Length: 137 Bit Score: 79.74 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 39 MLLIHAEVQAsLRRELIDTLGMDRARgLLTRMGYAAGMRDFELARTRAgsdgdvEAFMAGPQLHMLEGIAKVSTVSLEYD 118
Cdd:COG1719 1 MAAEEDFLVA-LFRALEEELGIAAAR-VLYRAGKRIGKELAERFKEEA------DLLEALKEFWKLSGWGILEIDELSEG 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2017541174 119 RdagsfyAEFIWENSWESEWhkhyYGTYSEPVCWSQIGYACAYASSFMGRPILYKELQCAGMGENHCRIVGKLLE 193
Cdd:COG1719 73 P------LVITVEDSPECRG----LPNSGKPVCHFLAGLLAGFFSELLGKEVEVRETECEAMGDDYCRFEVRPKE 137
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
261-379 |
6.88e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 63.55 E-value: 6.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 261 TVLLLGETGAGKEVFARALHNRSSRCNESFIAINCAAIPHDLVES---ELFGVEKGAFTGALSARpGRFERA---NGGTL 334
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKPDVL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2017541174 335 FLDEIGDLPLSAQVKLLRVLQEgeiERLGDHKVRKIDVRLVAATN 379
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTN 124
|
|
| V4R |
pfam02830 |
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, ... |
130-191 |
1.26e-09 |
|
V4R domain; The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.
Pssm-ID: 427011 Cd Length: 62 Bit Score: 54.22 E-value: 1.26e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2017541174 130 WENSWESEWHKHYYGTYSEPVCWSQIGYACAYASSFMGRPILYKELQCAGMGENHCRIVGKL 191
Cdd:pfam02830 1 LVISIEESPECAGLPNSGEPVCAFEAGILAGFLSELFGKPVEVEEVECEAMGADRCEFVVGP 62
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
522-561 |
6.51e-08 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 48.93 E-value: 6.51e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 2017541174 522 LDTVEATLIESAVKTANGNLSAAARALGLTRPQLAYRLRR 561
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
262-379 |
1.89e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 47.29 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 262 VLLLGETGAGK----EVFARALHNRssrcneSFIAINCAAiphDLVESELFG---VEkgafTGALSARPGRFERA--NGG 332
Cdd:pfam07728 2 VLLVGPPGTGKtelaERLAAALSNR------PVFYVQLTR---DTTEEDLFGrrnID----PGGASWVDGPLVRAarEGE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2017541174 333 TLFLDEIGDLPLSAQVKLLRVLQEGEI---ERLGDHKVRKIDVRLVAATN 379
Cdd:pfam07728 69 IAVLDEINRANPDVLNSLLSLLDERRLllpDGGELVKAAPDGFRLIATMN 118
|
|
| HTH_30 |
pfam13556 |
PucR C-terminal helix-turn-helix domain; This helix-turn-helix domain is often found at the ... |
538-564 |
1.71e-03 |
|
PucR C-terminal helix-turn-helix domain; This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Swiss:O32138 and is likely to be DNA-binding.
Pssm-ID: 433305 [Multi-domain] Cd Length: 56 Bit Score: 36.66 E-value: 1.71e-03
10 20
....*....|....*....|....*..
gi 2017541174 538 NGNLSAAARALGLTRPQLAYRLRRLQE 564
Cdd:pfam13556 9 GGNISATARALHVHRNTLRYRLRRIEE 35
|
|
| fis |
PRK00430 |
DNA-binding transcriptional regulator Fis; |
506-561 |
4.92e-03 |
|
DNA-binding transcriptional regulator Fis;
Pssm-ID: 179020 [Multi-domain] Cd Length: 95 Bit Score: 36.58 E-value: 4.92e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2017541174 506 EPVEDLYEFVikgnmtLDTVEATLIESAVKTANGNLSAAARALGLTRPQLAYRLRR 561
Cdd:PRK00430 42 QDVNDLYELV------LAEVEAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKK 91
|
|
| CdaR |
COG3835 |
Sugar diacid utilization regulator CdaR [Transcription, Signal transduction mechanisms]; |
505-564 |
7.92e-03 |
|
Sugar diacid utilization regulator CdaR [Transcription, Signal transduction mechanisms];
Pssm-ID: 443046 [Multi-domain] Cd Length: 301 Bit Score: 38.47 E-value: 7.92e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017541174 505 REPVEDLYEFVIKGNMTLDTVEAtLIESavktaNGNLSAAARALGLTRPQLAYRLRRLQE 564
Cdd:COG3835 223 EEVLGPLLEYDKHGGELLETLRA-YFEN-----NGNISETAEALFIHRNTLRYRLKKIEE 276
|
|
| AAA_32 |
pfam13654 |
LonB-like, AAA domain; This entry includes a wide variety of AAA domains, including some that ... |
307-360 |
9.15e-03 |
|
LonB-like, AAA domain; This entry includes a wide variety of AAA domains, including some that have lost essential nucleotide binding residues in the P-loop. This domain is found in Lon proteases from archaea and bacteria.
Pssm-ID: 463946 [Multi-domain] Cd Length: 133 Bit Score: 36.63 E-value: 9.15e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2017541174 307 LFG-VEKGAFTGALSA-----RPGRFERANGGTLFLDeIGDL---PLSAQvKLLRVLQEGEIE 360
Cdd:pfam13654 16 LFGrIEYEAEMGTLVTdftliKPGALHRANGGYLILD-AEDLlsnPFAWE-ALKRALRSGEIR 76
|
|
| HTH_1 |
pfam00126 |
Bacterial regulatory helix-turn-helix protein, lysR family; |
539-564 |
9.68e-03 |
|
Bacterial regulatory helix-turn-helix protein, lysR family;
Pssm-ID: 459683 [Multi-domain] Cd Length: 60 Bit Score: 34.67 E-value: 9.68e-03
|
| |
