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Conserved domains on  [gi|2017356731|gb|QTF48772|]
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cytochrome b, partial (mitochondrion) [Gerbillurus setzeri]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-45 1.04e-21

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 84.30  E-value: 1.04e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00100  223 YYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPH 267
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-45 1.04e-21

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 84.30  E-value: 1.04e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00100  223 YYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPH 267
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-45 3.38e-12

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 56.11  E-value: 3.38e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:cd00290    17 YFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLH 61
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-45 7.56e-08

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 45.55  E-value: 7.56e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDllGDPDNYTPANPLNTPPH 45
Cdd:COG1290   239 YYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAH 281
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-45 1.04e-21

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 84.30  E-value: 1.04e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00100  223 YYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPH 267
CYTB MTH00191
cytochrome b; Provisional
 1-45 1.41e-17

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 73.03  E-value: 1.41e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00191  220 YFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVH 264
CYTB MTH00119
cytochrome b; Provisional
 1-45 6.90e-17

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 71.09  E-value: 6.90e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00119  224 YFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPH 268
CYTB MTH00145
cytochrome b; Provisional
 1-45 5.58e-16

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 68.39  E-value: 5.58e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00145  224 YYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVH 268
CYTB MTH00156
cytochrome b; Provisional
 1-45 5.82e-16

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 68.27  E-value: 5.82e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00156  213 YFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVH 257
CYTB MTH00131
cytochrome b; Provisional
 1-45 1.15e-15

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 67.76  E-value: 1.15e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00131  223 YFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPH 267
CYTB MTH00074
cytochrome b; Provisional
 1-45 1.15e-15

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 67.78  E-value: 1.15e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00074  224 YFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPH 268
CYTB MTH00016
cytochrome b; Validated
 1-45 1.44e-14

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 64.70  E-value: 1.44e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00016  224 YYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTH 268
CYTB MTH00034
cytochrome b; Validated
 1-45 2.15e-13

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 61.26  E-value: 2.15e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00034  223 YFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPH 267
CYTB MTH00224
cytochrome b; Provisional
 1-45 2.70e-12

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 58.39  E-value: 2.70e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00224  224 YYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIH 268
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-45 3.38e-12

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 56.11  E-value: 3.38e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:cd00290    17 YFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLH 61
CYTB MTH00022
cytochrome b; Validated
 1-45 5.05e-11

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 54.71  E-value: 5.05e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00022  222 YYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVH 266
CYTB MTH00053
cytochrome b; Provisional
 1-45 2.91e-10

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 52.40  E-value: 2.91e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00053  224 YYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVH 268
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-45 7.56e-08

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 45.55  E-value: 7.56e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDllGDPDNYTPANPLNTPPH 45
Cdd:COG1290   239 YYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAH 281
CYTB MTH00046
cytochrome b; Validated
 1-43 5.24e-07

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 43.43  E-value: 5.24e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVLFFPDLLGDPDNYTPANPLNTP 43
Cdd:MTH00046  215 YFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTP 257
CYTB MTH00086
cytochrome b; Provisional
 1-45 5.53e-05

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 37.61  E-value: 5.53e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2017356731   1 YYSIKDLLGVFVLItLFMIMVLFFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00086  212 EYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVH 255
CYTB MTH00033
cytochrome b; Provisional
 1-45 1.72e-04

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 36.07  E-value: 1.72e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2017356731   1 YYSIKDLLGVFVLITLFMIMVL--FFPDLLGDPDNYTPANPLNTPPH 45
Cdd:MTH00033  220 YFTIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVH 266
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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