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Conserved domains on  [gi|2017107040|gb|QTF19610|]
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cytochrome b, partial (mitochondrion) [Terrapene carolina carolina]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-247 2.33e-168

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 469.38  E-value: 2.33e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   1 NLRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNM 80
Cdd:MTH00119    4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  81 HANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQ 160
Cdd:MTH00119   84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVE 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 161 WIWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTL 240
Cdd:MTH00119  164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTL 243


                  ....*..
gi 2017107040 241 ALFFPNL 247
Cdd:MTH00119  244 ALFSPNL 250
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-247 2.33e-168

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 469.38  E-value: 2.33e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   1 NLRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNM 80
Cdd:MTH00119    4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  81 HANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQ 160
Cdd:MTH00119   84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVE 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 161 WIWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTL 240
Cdd:MTH00119  164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTL 243


                  ....*..
gi 2017107040 241 ALFFPNL 247
Cdd:MTH00119  244 ALFSPNL 250
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-204 3.95e-93

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 271.93  E-value: 3.95e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   7 PLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGAS 86
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  87 LFFMCIYLHIGRGIYYGSY--LYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWG 164
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2017107040 165 GFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSN 204
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-226 5.80e-86

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 260.49  E-value: 5.80e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   7 PLAKIINNsFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGAS 86
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  87 LFFMCIYLHIGRGIYYGSylYKE----TWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWI 162
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2017107040 163 WGGFSVDNATLTRFFTFH-FLLPFTIMGLTVMHLLFLHETGSNNPTG----LNSNTDKIPFHPYFSYKD 226
Cdd:COG1290   176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD 244
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-202 3.97e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.84  E-value: 3.97e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  16 FIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMCIYLH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  96 IGRGIYYG--SYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWGGFSVDNATL 173
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2017107040 174 TRFFTFHFLLPFTIMGLTVMHLLFLHETG 202
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-247 2.33e-168

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 469.38  E-value: 2.33e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   1 NLRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNM 80
Cdd:MTH00119    4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  81 HANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQ 160
Cdd:MTH00119   84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVE 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 161 WIWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTL 240
Cdd:MTH00119  164 WIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTL 243


                  ....*..
gi 2017107040 241 ALFFPNL 247
Cdd:MTH00119  244 ALFSPNL 250
CYTB MTH00131
cytochrome b; Provisional
 1-247 2.10e-162

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 454.50  E-value: 2.10e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   1 NLRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNM 80
Cdd:MTH00131    3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  81 HANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQ 160
Cdd:MTH00131   83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 161 WIWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTL 240
Cdd:MTH00131  163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242


                  ....*..
gi 2017107040 241 ALFFPNL 247
Cdd:MTH00131  243 ALFSPNL 249
CYTB MTH00074
cytochrome b; Provisional
 1-247 2.00e-159

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 446.82  E-value: 2.00e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   1 NLRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNM 80
Cdd:MTH00074    4 PIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  81 HANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQ 160
Cdd:MTH00074   84 HANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQ 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 161 WIWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTL 240
Cdd:MTH00074  164 WIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALL 243


                  ....*..
gi 2017107040 241 ALFFPNL 247
Cdd:MTH00074  244 SLFSPNL 250
CYTB MTH00100
cytochrome b; Provisional
 1-247 8.51e-159

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 445.24  E-value: 8.51e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   1 NLRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNM 80
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  81 HANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQ 160
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 161 WIWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTL 240
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242


                  ....*..
gi 2017107040 241 ALFFPNL 247
Cdd:MTH00100  243 VLFSPDL 249
CYTB MTH00191
cytochrome b; Provisional
 2-247 1.56e-153

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 431.26  E-value: 1.56e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   2 LRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMH 81
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  82 ANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQW 161
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 162 IWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTLA 241
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240


                  ....*.
gi 2017107040 242 LFFPNL 247
Cdd:MTH00191  241 LFSPNL 246
CYTB MTH00156
cytochrome b; Provisional
 10-247 1.08e-150

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 423.81  E-value: 1.08e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  10 KIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGASLFF 89
Cdd:MTH00156    2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  90 MCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWGGFSVD 169
Cdd:MTH00156   82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2017107040 170 NATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTLALFFPNL 247
Cdd:MTH00156  162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYL 239
CYTB MTH00145
cytochrome b; Provisional
 2-247 5.55e-144

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 407.75  E-value: 5.55e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   2 LRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMH 81
Cdd:MTH00145    5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  82 ANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQW 161
Cdd:MTH00145   85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 162 IWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTLA 241
Cdd:MTH00145  165 VWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLV 244


                  ....*.
gi 2017107040 242 LFFPNL 247
Cdd:MTH00145  245 LFFPNL 250
CYTB MTH00034
cytochrome b; Validated
 2-247 9.54e-141

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 399.47  E-value: 9.54e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   2 LRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMH 81
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  82 ANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQW 161
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 162 IWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTLA 241
Cdd:MTH00034  164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243


                  ....*.
gi 2017107040 242 LFFPNL 247
Cdd:MTH00034  244 LLFPTA 249
CYTB MTH00016
cytochrome b; Validated
 2-247 1.99e-139

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 395.97  E-value: 1.99e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   2 LRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMH 81
Cdd:MTH00016    5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  82 ANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQW 161
Cdd:MTH00016   85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 162 IWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTLA 241
Cdd:MTH00016  165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244


                  ....*.
gi 2017107040 242 LFFPNL 247
Cdd:MTH00016  245 LLWPNI 250
CYTB MTH00224
cytochrome b; Provisional
 2-247 2.79e-123

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 355.38  E-value: 2.79e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   2 LRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMH 81
Cdd:MTH00224    5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  82 ANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQW 161
Cdd:MTH00224   85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 162 IWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTLA 241
Cdd:MTH00224  165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244


                  ....*.
gi 2017107040 242 LFFPNL 247
Cdd:MTH00224  245 LFEPNL 250
CYTB MTH00022
cytochrome b; Validated
 2-247 1.13e-116

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 338.60  E-value: 1.13e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   2 LRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMH 81
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  82 ANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQW 161
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 162 IWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTLA 241
Cdd:MTH00022  163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242


                  ....*.
gi 2017107040 242 LFFPNL 247
Cdd:MTH00022  243 YFAPNL 248
CYTB MTH00053
cytochrome b; Provisional
 2-245 2.14e-114

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 332.83  E-value: 2.14e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   2 LRKTHPLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMH 81
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  82 ANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQW 161
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 162 IWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKDLLGLILMLALLLTLA 241
Cdd:MTH00053  165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244


                  ....
gi 2017107040 242 LFFP 245
Cdd:MTH00053  245 FLFP 248
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-204 3.95e-93

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 271.93  E-value: 3.95e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   7 PLAKIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGAS 86
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  87 LFFMCIYLHIGRGIYYGSY--LYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWG 164
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2017107040 165 GFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSN 204
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00033
cytochrome b; Provisional
 2-226 1.53e-90

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 272.20  E-value: 1.53e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   2 LRKTHPLAKIinNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMH 81
Cdd:MTH00033    3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  82 ANGASLFFMCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQW 161
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2017107040 162 IWGGFSVDNATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKD 226
Cdd:MTH00033  161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKD 225
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-226 5.80e-86

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 260.49  E-value: 5.80e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040   7 PLAKIINNsFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGAS 86
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  87 LFFMCIYLHIGRGIYYGSylYKE----TWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWI 162
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWL 175

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2017107040 163 WGGFSVDNATLTRFFTFH-FLLPFTIMGLTVMHLLFLHETGSNNPTG----LNSNTDKIPFHPYFSYKD 226
Cdd:COG1290   176 FGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKD 244
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-202 3.97e-84

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 248.84  E-value: 3.97e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  16 FIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMCIYLH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  96 IGRGIYYG--SYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWGGFSVDNATL 173
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2017107040 174 TRFFTFHFLLPFTIMGLTVMHLLFLHETG 202
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00086
cytochrome b; Provisional
 10-226 1.41e-79

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 243.31  E-value: 1.41e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  10 KIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGASLFF 89
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  90 MCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWGGFSVD 169
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2017107040 170 NATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKD 226
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD 217
CYTB MTH00046
cytochrome b; Validated
 10-247 5.87e-58

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 187.88  E-value: 5.87e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  10 KIINNSFIDLPSPSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGASLFF 89
Cdd:MTH00046    3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  90 MCIYLHIGRGIYYGSYLYKETWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWGGFSVD 169
Cdd:MTH00046   83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2017107040 170 NATLTRFFTFHFLLPFTIMGLTVMHLLFLHETGSNNPTGL-NSNTDKIPFHPYFSYKDLLGLILMLALLLTLALFFPNL 247
Cdd:MTH00046  163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
86-226 5.75e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 138.14  E-value: 5.75e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  86 SLFFMCIYLHIGRGIYYGSYLYKE--TWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIW 163
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2017107040 164 GGFSVDNATLTRFFTFHF-LLPFTIMGLTVMHLLFLHETGSNNPTGLNSNTDKIPFHPYFSYKD 226
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
PRK03735 PRK03735
cytochrome b6; Provisional
 31-206 5.98e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 129.45  E-value: 5.98e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  31 FGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMCIYLHIGRGIYYGSYLYKE- 109
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 110 -TWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWGGFSVDNATLTRFFTFH-FLLPFTI 187
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 2017107040 188 MGLTVMHLLFLHETGSNNP 206
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 22-206 1.41e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 115.59  E-value: 1.41e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040  22 PSNISAWWNFGSLLGTCLILQTITGIFLAMHYSPDISLAFSSVAHITRDVQYGWLIRNMHANGASLFFMCIYLHIGRGIY 101
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017107040 102 YGSYLYKE--TWNTGTTLLLLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNTLVQWIWGGFSVDNATLTRFFTF 179
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 2017107040 180 H-FLLPFTIMGLTVMHLLFLHETGSNNP 206
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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