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Conserved domains on  [gi|2013293991|emb|CAF1548476|]
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unnamed protein product, partial [Didymodactylos carnosus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YtfP super family cl43604
Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family [Amino acid ...
 23-123 1.17e-03

Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family [Amino acid transport and metabolism];


The actual alignment was detected with superfamily member COG2105:

Pssm-ID: 441708 [Multi-domain]  Cd Length: 114  Bit Score: 36.02  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013293991  23 HHLAVYGTLRDddnsgAAWTEAFVKDIKSAITGKVRGaKMYwntDL-KYPFVTLTGihTDSITVRVLEwFSDEQFQnkii 101
Cdd:COG2105     1 MLLFVYGTLRR-----GESNHHLLRGARFLGPATLEG-RLY---DLgAYPALVPDG--GGRVYGELYE-VDDALLA---- 64

                          90       100
                  ....*....|....*....|..
gi 2013293991 102 EADRIEGYfpdqpdfDSEYVRK 123
Cdd:COG2105    65 ALDELEGA-------PNLYRRE 79
 
Name Accession Description Interval E-value
YtfP COG2105
Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family [Amino acid ...
 23-123 1.17e-03

Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family [Amino acid transport and metabolism];


Pssm-ID: 441708 [Multi-domain]  Cd Length: 114  Bit Score: 36.02  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013293991  23 HHLAVYGTLRDddnsgAAWTEAFVKDIKSAITGKVRGaKMYwntDL-KYPFVTLTGihTDSITVRVLEwFSDEQFQnkii 101
Cdd:COG2105     1 MLLFVYGTLRR-----GESNHHLLRGARFLGPATLEG-RLY---DLgAYPALVPDG--GGRVYGELYE-VDDALLA---- 64

                          90       100
                  ....*....|....*....|..
gi 2013293991 102 EADRIEGYfpdqpdfDSEYVRK 123
Cdd:COG2105    65 ALDELEGA-------PNLYRRE 79
 
Name Accession Description Interval E-value
YtfP COG2105
Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family [Amino acid ...
 23-123 1.17e-03

Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family [Amino acid transport and metabolism];


Pssm-ID: 441708 [Multi-domain]  Cd Length: 114  Bit Score: 36.02  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2013293991  23 HHLAVYGTLRDddnsgAAWTEAFVKDIKSAITGKVRGaKMYwntDL-KYPFVTLTGihTDSITVRVLEwFSDEQFQnkii 101
Cdd:COG2105     1 MLLFVYGTLRR-----GESNHHLLRGARFLGPATLEG-RLY---DLgAYPALVPDG--GGRVYGELYE-VDDALLA---- 64

                          90       100
                  ....*....|....*....|..
gi 2013293991 102 EADRIEGYfpdqpdfDSEYVRK 123
Cdd:COG2105    65 ALDELEGA-------PNLYRRE 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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